© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01404 |
| Gene name | |
| Location | scaffold_01:4910473..4912282 |
| Strand | - |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1809 |
| Coding sequence length (bp) | 1809 |
| Protein length (aa) | 603 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08740 | BCS1_N | BCS1 N terminal | 6.4E-53 | 48 | 240 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 3.2E-09 | 278 | 342 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.0E-05 | 382 | 427 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0003824 | catalytic activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | 0.1423 | 0.3148 | 0.0262 | 0.0639 | 0.4602 | 0.0096 | 0.5143 | 0.0743 | 0.1007 | 0.097 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 37 | 54 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 4178 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01404 MDTPSAPQFAILDYLLPGFSSIISAANAFLGIDIGRYLPAIVVVLGGIIAWGHVRDSLWALVEDHLMSSVRIRTD DEIYNYVMLWLSKQRFATSSRHFLANTDINSRSSYMYRYGDSDDERDSDDDDDDDDKAKDVRGGCKALRYTPAFG THWFWYGRQPLVFERHQNRERMSFETASEREELSLSCFGRSPRVLKELLLEARAMHLRRDKRKTLIYRGNLLTVS WQRCMARLNRPLQTVILSERVRQDMIDDAADYLDPATRRWYANRGIPYRRGYLLYGPPGTGKSSLSLALAGYFGI KIYMVSLSSTSATEENITTLFNDLPTRCIVLLEDIDTAGLAHTRDDAQPSSDPAPGPPPASTPTGGRPAASPPTT VGGRLSLSGLLNILDGVASQEGRILIMTTNHVDKLDKALIRPGRVDMTIPFSLADRDMMSSIFRAIYAPYDNETS LVGRRRCSTDTHDTEEAKLRYENNQRERERVREMAEKFANKMPELEFSPAEIQGLLLRHKRSPQVAMAAVEDWVV RTRREKRERAEKEAAAQQTERKRQGAEKPRAGDDARDEEMKARTQTTEAKSDKETSTRGTGPLTGAKNASDSGYE TP* |
| Coding | >Ophcf2|01404 ATGGACACGCCCAGCGCGCCGCAGTTTGCCATCCTCGACTACCTCCTGCCGGGCTTCTCAAGCATCATCTCGGCA GCCAATGCCTTTCTCGGCATCGACATCGGCCGCTACCTCCCTGCCATCGTAGTGGTGCTGGGCGGAATCATCGCC TGGGGTCATGTGCGGGACTCGCTGTGGGCGCTTGTCGAGGACCATCTGATGTCTTCGGTACGGATCCGGACCGAC GATGAGATTTACAACTACGTGATGCTGTGGCTGTCGAAGCAGCGGTTCGCTACGTCCTCGCGTCACTTTCTCGCC AACACGGATATCAACTCGCGCAGCAGCTACATGTACCGATACGGAGACTCAGACGACGAGCGAGACTCGGACGAT GATGACGACGATGACGACAAAGCCAAGGACGTCCGCGGTGGTTGCAAGGCGCTCCGATACACGCCCGCCTTTGGC ACCCACTGGTTCTGGTACGGCCGTCAGCCTCTCGTCTTCGAGCGCCACCAGAACAGGGAGCGGATGAGCTTCGAA ACAGCCAGCGAGCGAGAGGAGCTCTCGCTGTCGTGCTTCGGCCGCAGTCCGCGCGTGCTCAAGGAGCTGCTGCTC GAGGCTCGCGCCATGCACCTGCGAAGGGACAAGCGAAAGACGCTCATCTACCGCGGCAACCTCCTCACCGTCTCG TGGCAACGCTGCATGGCCCGTCTAAACAGGCCGCTGCAGACCGTTATCCTCAGCGAACGCGTCAGGCAGGACATG ATTGATGACGCGGCGGATTATCTCGATCCGGCCACTCGCCGCTGGTACGCCAACCGGGGAATCCCCTACCGTCGC GGATATCTGCTGTATGGGCCGCCTGGCACGGGTAAGAGCTCGCTGAGCCTAGCCTTGGCGGGATATTTTGGCATC AAGATCTACATGGTCAGCCTGAGCTCGACTTCGGCGACCGAGGAGAACATAACGACTCTGTTCAACGACCTTCCC ACCCGCTGCATCGTGTTGCTCGAGGACATTGATACGGCCGGCCTCGCCCATACCCGCGATGACGCCCAGCCGTCG TCAGACCCGGCTCCGGGCCCCCCTCCGGCCTCTACGCCCACTGGCGGCCGACCGGCGGCGTCTCCTCCTACCACG GTCGGCGGGCGCCTCTCGCTATCCGGTCTGCTCAACATTCTCGACGGCGTCGCCTCGCAGGAGGGACGCATTCTC ATCATGACGACCAACCACGTCGACAAGCTGGACAAGGCCCTCATCCGTCCTGGCCGCGTCGACATGACGATTCCC TTTAGCCTGGCCGACAGGGACATGATGTCCTCCATCTTCCGTGCCATATACGCCCCGTATGACAACGAGACGTCG CTCGTTGGCCGACGGCGTTGCTCTACCGACACTCATGACACCGAAGAGGCGAAGCTGCGGTACGAGAATAACCAG AGAGAGCGCGAGCGCGTGAGGGAAATGGCCGAGAAGTTCGCCAACAAGATGCCCGAGCTGGAGTTCAGCCCAGCC GAGATTCAGGGTCTCTTGCTGCGGCACAAGCGGAGTCCGCAGGTAGCCATGGCCGCGGTGGAAGACTGGGTCGTC CGCACGCGCAGGGAGAAAAGGGAGCGTGCCGAGAAAGAGGCGGCAGCCCAGCAGACGGAGCGCAAGCGGCAAGGG GCCGAGAAGCCGAGGGCAGGCGACGACGCGAGAGACGAAGAGATGAAGGCTCGGACGCAGACGACTGAAGCCAAG AGCGACAAGGAGACGTCGACGAGAGGCACGGGCCCGTTGACGGGGGCTAAGAATGCTTCCGACTCGGGCTACGAG ACACCCTAG |
| Transcript | >Ophcf2|01404 ATGGACACGCCCAGCGCGCCGCAGTTTGCCATCCTCGACTACCTCCTGCCGGGCTTCTCAAGCATCATCTCGGCA GCCAATGCCTTTCTCGGCATCGACATCGGCCGCTACCTCCCTGCCATCGTAGTGGTGCTGGGCGGAATCATCGCC TGGGGTCATGTGCGGGACTCGCTGTGGGCGCTTGTCGAGGACCATCTGATGTCTTCGGTACGGATCCGGACCGAC GATGAGATTTACAACTACGTGATGCTGTGGCTGTCGAAGCAGCGGTTCGCTACGTCCTCGCGTCACTTTCTCGCC AACACGGATATCAACTCGCGCAGCAGCTACATGTACCGATACGGAGACTCAGACGACGAGCGAGACTCGGACGAT GATGACGACGATGACGACAAAGCCAAGGACGTCCGCGGTGGTTGCAAGGCGCTCCGATACACGCCCGCCTTTGGC ACCCACTGGTTCTGGTACGGCCGTCAGCCTCTCGTCTTCGAGCGCCACCAGAACAGGGAGCGGATGAGCTTCGAA ACAGCCAGCGAGCGAGAGGAGCTCTCGCTGTCGTGCTTCGGCCGCAGTCCGCGCGTGCTCAAGGAGCTGCTGCTC GAGGCTCGCGCCATGCACCTGCGAAGGGACAAGCGAAAGACGCTCATCTACCGCGGCAACCTCCTCACCGTCTCG TGGCAACGCTGCATGGCCCGTCTAAACAGGCCGCTGCAGACCGTTATCCTCAGCGAACGCGTCAGGCAGGACATG ATTGATGACGCGGCGGATTATCTCGATCCGGCCACTCGCCGCTGGTACGCCAACCGGGGAATCCCCTACCGTCGC GGATATCTGCTGTATGGGCCGCCTGGCACGGGTAAGAGCTCGCTGAGCCTAGCCTTGGCGGGATATTTTGGCATC AAGATCTACATGGTCAGCCTGAGCTCGACTTCGGCGACCGAGGAGAACATAACGACTCTGTTCAACGACCTTCCC ACCCGCTGCATCGTGTTGCTCGAGGACATTGATACGGCCGGCCTCGCCCATACCCGCGATGACGCCCAGCCGTCG TCAGACCCGGCTCCGGGCCCCCCTCCGGCCTCTACGCCCACTGGCGGCCGACCGGCGGCGTCTCCTCCTACCACG GTCGGCGGGCGCCTCTCGCTATCCGGTCTGCTCAACATTCTCGACGGCGTCGCCTCGCAGGAGGGACGCATTCTC ATCATGACGACCAACCACGTCGACAAGCTGGACAAGGCCCTCATCCGTCCTGGCCGCGTCGACATGACGATTCCC TTTAGCCTGGCCGACAGGGACATGATGTCCTCCATCTTCCGTGCCATATACGCCCCGTATGACAACGAGACGTCG CTCGTTGGCCGACGGCGTTGCTCTACCGACACTCATGACACCGAAGAGGCGAAGCTGCGGTACGAGAATAACCAG AGAGAGCGCGAGCGCGTGAGGGAAATGGCCGAGAAGTTCGCCAACAAGATGCCCGAGCTGGAGTTCAGCCCAGCC GAGATTCAGGGTCTCTTGCTGCGGCACAAGCGGAGTCCGCAGGTAGCCATGGCCGCGGTGGAAGACTGGGTCGTC CGCACGCGCAGGGAGAAAAGGGAGCGTGCCGAGAAAGAGGCGGCAGCCCAGCAGACGGAGCGCAAGCGGCAAGGG GCCGAGAAGCCGAGGGCAGGCGACGACGCGAGAGACGAAGAGATGAAGGCTCGGACGCAGACGACTGAAGCCAAG AGCGACAAGGAGACGTCGACGAGAGGCACGGGCCCGTTGACGGGGGCTAAGAATGCTTCCGACTCGGGCTACGAG ACACCCTAG |
| Gene | >Ophcf2|01404 ATGGACACGCCCAGCGCGCCGCAGTTTGCCATCCTCGACTACCTCCTGCCGGGCTTCTCAAGCATCATCTCGGCA GCCAATGCCTTTCTCGGCATCGACATCGGCCGCTACCTCCCTGCCATCGTAGTGGTGCTGGGCGGAATCATCGCC TGGGGTCATGTGCGGGACTCGCTGTGGGCGCTTGTCGAGGACCATCTGATGTCTTCGGTACGGATCCGGACCGAC GATGAGATTTACAACTACGTGATGCTGTGGCTGTCGAAGCAGCGGTTCGCTACGTCCTCGCGTCACTTTCTCGCC AACACGGATATCAACTCGCGCAGCAGCTACATGTACCGATACGGAGACTCAGACGACGAGCGAGACTCGGACGAT GATGACGACGATGACGACAAAGCCAAGGACGTCCGCGGTGGTTGCAAGGCGCTCCGATACACGCCCGCCTTTGGC ACCCACTGGTTCTGGTACGGCCGTCAGCCTCTCGTCTTCGAGCGCCACCAGAACAGGGAGCGGATGAGCTTCGAA ACAGCCAGCGAGCGAGAGGAGCTCTCGCTGTCGTGCTTCGGCCGCAGTCCGCGCGTGCTCAAGGAGCTGCTGCTC GAGGCTCGCGCCATGCACCTGCGAAGGGACAAGCGAAAGACGCTCATCTACCGCGGCAACCTCCTCACCGTCTCG TGGCAACGCTGCATGGCCCGTCTAAACAGGCCGCTGCAGACCGTTATCCTCAGCGAACGCGTCAGGCAGGACATG ATTGATGACGCGGCGGATTATCTCGATCCGGCCACTCGCCGCTGGTACGCCAACCGGGGAATCCCCTACCGTCGC GGATATCTGCTGTATGGGCCGCCTGGCACGGGTAAGAGCTCGCTGAGCCTAGCCTTGGCGGGATATTTTGGCATC AAGATCTACATGGTCAGCCTGAGCTCGACTTCGGCGACCGAGGAGAACATAACGACTCTGTTCAACGACCTTCCC ACCCGCTGCATCGTGTTGCTCGAGGACATTGATACGGCCGGCCTCGCCCATACCCGCGATGACGCCCAGCCGTCG TCAGACCCGGCTCCGGGCCCCCCTCCGGCCTCTACGCCCACTGGCGGCCGACCGGCGGCGTCTCCTCCTACCACG GTCGGCGGGCGCCTCTCGCTATCCGGTCTGCTCAACATTCTCGACGGCGTCGCCTCGCAGGAGGGACGCATTCTC ATCATGACGACCAACCACGTCGACAAGCTGGACAAGGCCCTCATCCGTCCTGGCCGCGTCGACATGACGATTCCC TTTAGCCTGGCCGACAGGGACATGATGTCCTCCATCTTCCGTGCCATATACGCCCCGTATGACAACGAGACGTCG CTCGTTGGCCGACGGCGTTGCTCTACCGACACTCATGACACCGAAGAGGCGAAGCTGCGGTACGAGAATAACCAG AGAGAGCGCGAGCGCGTGAGGGAAATGGCCGAGAAGTTCGCCAACAAGATGCCCGAGCTGGAGTTCAGCCCAGCC GAGATTCAGGGTCTCTTGCTGCGGCACAAGCGGAGTCCGCAGGTAGCCATGGCCGCGGTGGAAGACTGGGTCGTC CGCACGCGCAGGGAGAAAAGGGAGCGTGCCGAGAAAGAGGCGGCAGCCCAGCAGACGGAGCGCAAGCGGCAAGGG GCCGAGAAGCCGAGGGCAGGCGACGACGCGAGAGACGAAGAGATGAAGGCTCGGACGCAGACGACTGAAGCCAAG AGCGACAAGGAGACGTCGACGAGAGGCACGGGCCCGTTGACGGGGGCTAAGAATGCTTCCGACTCGGGCTACGAG ACACCCTAG |