Protein ID | Ophcf2|01391 |
Gene name | |
Location | scaffold_01:4876217..4878115 |
Strand | - |
Gene length (bp) | 1898 |
Transcript length (bp) | 1689 |
Coding sequence length (bp) | 1689 |
Protein length (aa) | 563 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1996 | 0.141 | 0.0194 | 0.5964 | 0.0912 | 0.0133 | 0.5903 | 0.5261 | 0.4241 | 0.0042 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
2 | 55 | 77 | 22 |
3 | 92 | 114 | 22 |
4 | 146 | 168 | 22 |
5 | 203 | 225 | 22 |
6 | 246 | 268 | 22 |
7 | 288 | 310 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 64 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|01391 MDHLTVYTLPTSPPRWDRVGVFYMSFGASWTALVVAGMAFCLYHRRNPILRLRGLGLSFGAISLLHVYWILAQIV YPVASTVPIVLAYDIQYFVMGMYFPLGIALFHASNSRFLHVAKLQMQFTQGAPARKPSVGWFASVPYMVKLMTVI SMGMIVQVIACVGMWLLCRKYHPTFGLLGTEMKAQTLPAQIVELGRGWEWWPSVLWQLIWAWIVAPVLIWRAWGI RDTMGWRTQTIGCCLSNLHATPMFLIASYVPAFAPVNLYFAPSQWYGVRLELCIGSWLTSSSIRIHLSVFMFEIF TVFVPAFEVVRLGIQKRRVANLNAKWDAESTTSTLTPGDWRKRSTVHIGGDKSRWTLDEELGDRLLSMSALEHVL ASNPGPLQEFSALSDFSGENIAFLTRTASWKSSWTDAGEQRLQVYNSALEIYVSFVSPRDAEFPLNLSSAKLRRL EAVFEIPARILYGEARTDLATPFADDSFGPNQSRLTAQYTGEIPDGFGPDVFEEAIQHIKSLVLTNTWPKFIDEM QSPRRKSTETTWTGISANSQSTLASRLSKQLSRLMKK* |
Coding | >Ophcf2|01391 ATGGATCACTTGACCGTCTACACGCTGCCGACGAGCCCTCCCCGCTGGGACAGGGTCGGCGTCTTCTACATGTCC TTTGGCGCCTCGTGGACGGCCCTCGTCGTGGCAGGCATGGCCTTTTGCCTCTATCACCGCCGCAACCCGATCCTG AGGCTCCGTGGCCTGGGCCTGTCGTTCGGCGCCATTTCTCTGCTTCACGTCTACTGGATACTGGCCCAGATCGTG TATCCCGTCGCCAGCACCGTCCCCATCGTCCTGGCCTATGATATCCAGTACTTCGTCATGGGAATGTACTTTCCG CTGGGAATCGCTCTGTTTCACGCCTCCAACAGCCGCTTCCTGCACGTTGCCAAGCTGCAGATGCAGTTCACCCAG GGAGCTCCGGCCCGGAAGCCCAGCGTCGGCTGGTTCGCCAGCGTGCCGTACATGGTGAAGCTCATGACGGTCATT AGCATGGGCATGATCGTCCAGGTCATCGCTTGCGTCGGCATGTGGCTTCTGTGTAGGAAATACCATCCCACCTTT GGCCTCCTCGGCACAGAGATGAAAGCACAAACTCTTCCAGCGCAGATCGTCGAGCTCGGCCGCGGTTGGGAATGG TGGCCTTCGGTGCTGTGGCAGCTCATCTGGGCCTGGATTGTTGCTCCCGTCCTCATCTGGCGTGCCTGGGGCATC CGCGATACCATGGGTTGGCGGACTCAGACCATCGGCTGCTGTCTCTCCAATCTCCACGCGACGCCCATGTTTCTC ATCGCCTCCTACGTACCCGCTTTTGCGCCCGTCAATCTTTACTTTGCCCCAAGCCAATGGTATGGCGTCCGACTC GAGCTCTGCATAGGGTCTTGGCTGACGTCGAGCTCCATCAGGATTCATCTGTCCGTCTTCATGTTCGAAATCTTC ACAGTCTTCGTCCCCGCCTTCGAGGTCGTCAGGCTCGGCATCCAGAAAAGAAGGGTTGCCAACCTCAACGCCAAG TGGGATGCCGAGTCGACGACGTCGACGCTGACGCCCGGTGACTGGCGGAAGCGATCGACGGTACACATAGGCGGC GACAAGTCCAGGTGGACGCTCGATGAGGAACTCGGCGATCGCCTCCTAAGCATGAGCGCCCTCGAGCACGTCCTC GCCTCGAACCCCGGCCCACTGCAGGAGTTTTCTGCCCTGAGCGATTTCTCGGGAGAGAATATCGCCTTCCTGACG CGCACAGCCTCGTGGAAGTCGTCCTGGACCGACGCCGGCGAGCAGAGACTCCAAGTATACAACTCAGCGCTCGAA ATCTACGTCAGTTTCGTCAGCCCCCGCGACGCCGAGTTCCCCTTGAACCTCTCGTCCGCCAAGCTCCGCCGTCTC GAGGCCGTCTTCGAGATTCCGGCGAGAATTTTGTATGGCGAGGCCCGCACTGATCTGGCCACGCCCTTTGCCGAC GATTCTTTCGGGCCGAATCAGAGCCGTTTGACGGCGCAGTATACGGGCGAGATCCCAGATGGATTCGGTCCGGAC GTCTTTGAAGAGGCCATCCAACATATCAAGTCTCTCGTCCTAACCAACACTTGGCCCAAGTTCATCGATGAGATG CAATCGCCGAGGAGGAAGTCGACCGAAACGACCTGGACCGGCATCAGCGCCAACTCGCAGTCCACGCTGGCCAGT CGACTCTCGAAGCAATTATCGAGACTGATGAAGAAGTAG |
Transcript | >Ophcf2|01391 ATGGATCACTTGACCGTCTACACGCTGCCGACGAGCCCTCCCCGCTGGGACAGGGTCGGCGTCTTCTACATGTCC TTTGGCGCCTCGTGGACGGCCCTCGTCGTGGCAGGCATGGCCTTTTGCCTCTATCACCGCCGCAACCCGATCCTG AGGCTCCGTGGCCTGGGCCTGTCGTTCGGCGCCATTTCTCTGCTTCACGTCTACTGGATACTGGCCCAGATCGTG TATCCCGTCGCCAGCACCGTCCCCATCGTCCTGGCCTATGATATCCAGTACTTCGTCATGGGAATGTACTTTCCG CTGGGAATCGCTCTGTTTCACGCCTCCAACAGCCGCTTCCTGCACGTTGCCAAGCTGCAGATGCAGTTCACCCAG GGAGCTCCGGCCCGGAAGCCCAGCGTCGGCTGGTTCGCCAGCGTGCCGTACATGGTGAAGCTCATGACGGTCATT AGCATGGGCATGATCGTCCAGGTCATCGCTTGCGTCGGCATGTGGCTTCTGTGTAGGAAATACCATCCCACCTTT GGCCTCCTCGGCACAGAGATGAAAGCACAAACTCTTCCAGCGCAGATCGTCGAGCTCGGCCGCGGTTGGGAATGG TGGCCTTCGGTGCTGTGGCAGCTCATCTGGGCCTGGATTGTTGCTCCCGTCCTCATCTGGCGTGCCTGGGGCATC CGCGATACCATGGGTTGGCGGACTCAGACCATCGGCTGCTGTCTCTCCAATCTCCACGCGACGCCCATGTTTCTC ATCGCCTCCTACGTACCCGCTTTTGCGCCCGTCAATCTTTACTTTGCCCCAAGCCAATGGTATGGCGTCCGACTC GAGCTCTGCATAGGGTCTTGGCTGACGTCGAGCTCCATCAGGATTCATCTGTCCGTCTTCATGTTCGAAATCTTC ACAGTCTTCGTCCCCGCCTTCGAGGTCGTCAGGCTCGGCATCCAGAAAAGAAGGGTTGCCAACCTCAACGCCAAG TGGGATGCCGAGTCGACGACGTCGACGCTGACGCCCGGTGACTGGCGGAAGCGATCGACGGTACACATAGGCGGC GACAAGTCCAGGTGGACGCTCGATGAGGAACTCGGCGATCGCCTCCTAAGCATGAGCGCCCTCGAGCACGTCCTC GCCTCGAACCCCGGCCCACTGCAGGAGTTTTCTGCCCTGAGCGATTTCTCGGGAGAGAATATCGCCTTCCTGACG CGCACAGCCTCGTGGAAGTCGTCCTGGACCGACGCCGGCGAGCAGAGACTCCAAGTATACAACTCAGCGCTCGAA ATCTACGTCAGTTTCGTCAGCCCCCGCGACGCCGAGTTCCCCTTGAACCTCTCGTCCGCCAAGCTCCGCCGTCTC GAGGCCGTCTTCGAGATTCCGGCGAGAATTTTGTATGGCGAGGCCCGCACTGATCTGGCCACGCCCTTTGCCGAC GATTCTTTCGGGCCGAATCAGAGCCGTTTGACGGCGCAGTATACGGGCGAGATCCCAGATGGATTCGGTCCGGAC GTCTTTGAAGAGGCCATCCAACATATCAAGTCTCTCGTCCTAACCAACACTTGGCCCAAGTTCATCGATGAGATG CAATCGCCGAGGAGGAAGTCGACCGAAACGACCTGGACCGGCATCAGCGCCAACTCGCAGTCCACGCTGGCCAGT CGACTCTCGAAGCAATTATCGAGACTGATGAAGAAGTAG |
Gene | >Ophcf2|01391 ATGGATCACTTGACCGTCTACACGCTGCCGACGAGCCCTCCCCGCTGGGACAGGGTCGGCGTCTTCTACATGTCC TTTGGCGCCTCGTGGACGGCCCTCGTCGTGGCAGGCATGGCCTTTTGCCTCTATCACCGCCGCAACCCGATCCTG AGGCTCCGTGGCCTGGGCCTGTCGTTCGGCGCCATTTCTCTGCTTCACGTCTACTGGATACTGGCCCAGATCGTG TATCCCGTCGCCAGCACCGTCCCCATCGTCCTGGCCTATGATATCCAGTACTTCGTCATGGGAATGTACTTTCCG CTGGGAATCGCTCTGTTTCACGCCTCCAACAGCCGCTTCCTGCACGTTGCCAAGCTGCAGATGCAGTTCACCCAG GGAGCTCCGGCCCGGAAGCCCAGCGTCGGCTGGTTCGCCAGCGTGCCGTACATGGTGAAGCTCATGACGGTCATT AGCATGGGCATGATCGTCCAGGTCTGCTCCATTCTCTCCCTCTCCCTCCCTCCCTCTCACTCTCTCTATCCTCCT CCTCTCTCCCGGCTCAGCCGTCTCTCTGCTGACGTTTGGAACGCAGGTCATCGCTTGCGTCGGCATGTGGCTTCT GTGTAGGAAATACCATCCCACCTTTGGCCTCCTCGGCACAGAGATGAAAGCACAAACTCTTCCAGCGCAGATCGT CGAGCTCGGCCGCGGTTGGGAATGGTGGCCTTCGGTGCTGTGGCAGCTCATCTGGGCCTGGATTGTGCGTCATAA ACTCGGCTCTCTCCATCGACTTCTCGCTGACGAGATGGCTCAGGTTGCTCCCGTCCTCATCTGGCGTGCCTGGGG CATCCGCGATACCATGGGTTGGCGGACTCAGACCATCGGCTGCTGTCTCTCCAAGTGCGTCTCCGAGTTTCGTCT TCCGAATGCCTCACCCTAACTTTGCCACCTTCAGTCTCCACGCGACGCCCATGTTTCTCATCGCCTCCTACGTAC CCGCTTTTGCGCCCGTCAATCTTTACTTTGCCCCAAGCCAATGGTATGGCGTCCGACTCGAGCTCTGCATAGGGT CTTGGCTGACGTCGAGCTCCATCAGGATTCATCTGTCCGTCTTCATGTTCGAAATCTTCACAGTCTTCGTCCCCG CCTTCGAGGTCGTCAGGCTCGGCATCCAGAAAAGAAGGGTTGCCAACCTCAACGCCAAGTGGGATGCCGAGTCGA CGACGTCGACGCTGACGCCCGGTGACTGGCGGAAGCGATCGACGGTACACATAGGCGGCGACAAGTCCAGGTGGA CGCTCGATGAGGAACTCGGCGATCGCCTCCTAAGCATGAGCGCCCTCGAGCACGTCCTCGCCTCGAACCCCGGCC CACTGCAGGAGTTTTCTGCCCTGAGCGATTTCTCGGGAGAGAATATCGCCTTCCTGACGCGCACAGCCTCGTGGA AGTCGTCCTGGACCGACGCCGGCGAGCAGAGACTCCAAGTATACAACTCAGCGCTCGAAATCTACGTCAGTTTCG TCAGCCCCCGCGACGCCGAGTTCCCCTTGAACCTCTCGTCCGCCAAGCTCCGCCGTCTCGAGGCCGTCTTCGAGA TTCCGGCGAGAATTTTGTATGGCGAGGCCCGCACTGATCTGGCCACGCCCTTTGCCGACGATTCTTTCGGGCCGA ATCAGAGCCGTTTGACGGCGCAGTATACGGGCGAGATCCCAGATGGATTCGGTCCGGACGTCTTTGAAGAGGCCA TCCAACATATCAAGTCTCTCGTCCTAACCAACACTTGGCCCAAGTTCATCGATGAGATGCAATCGCCGAGGAGGA AGTCGACCGAAACGACCTGGACCGGCATCAGCGCCAACTCGCAGTCCACGCTGGCCAGTCGACTCTCGAAGCAAT TATCGAGACTGATGAAGAAGTAG |