© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01369 |
| Gene name | |
| Location | scaffold_01:4819205..4821512 |
| Strand | + |
| Gene length (bp) | 2307 |
| Transcript length (bp) | 2259 |
| Coding sequence length (bp) | 2259 |
| Protein length (aa) | 753 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07885 | Ion_trans_2 | Ion channel | 9.4E-16 | 216 | 288 |
| PF07885 | Ion_trans_2 | Ion channel | 2.1E-17 | 375 | 452 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Transmembrane domain | 0.1155 | 0.0619 | 0.0202 | 0.7639 | 0.1588 | 0.0203 | 0.3027 | 0.6404 | 0.2041 | 0.0197 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 95 | 117 | 22 |
| 2 | 130 | 152 | 22 |
| 3 | 167 | 189 | 22 |
| 4 | 210 | 229 | 19 |
| 5 | 265 | 287 | 22 |
| 6 | 367 | 389 | 22 |
| 7 | 399 | 421 | 22 |
| 8 | 428 | 445 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 6326 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01369 MVDSPLIDASDPLARVATSLLRPEFPLEARFQNDDSHLVPSRLWFASSAFPMVAGTLGPVASAFSICALVRQWRQ HVPPETDLDAATFVPDPPWLLIINAIQLAVALVANIMLLLNMAKRVRFTIAQPITIVGWYISSILLIACTATASG PLRRSLDPPDEYVWSQAFYYGIWAAILYFIVASLMAVTFCGAWSGHYDKDFNLTNSQRTLMLQTIAVLAYLLIGA LIFSKIEDWPYLDAVYWADVTLFTIGFGDFAPKTQLGRGLLIPYALVGIISVGLVISSISSLMLERGSRRLDARM EEKRRRKVITAMTRKGEDDILTPLPPGPISNMRVSDDPLADEFDRRRCEFDLMRMIQKTASSRRRWLAMALSFSI WVVLWLVGAAVFYACEWSYQHWTYFEAFYYCFISLLTIGYGDLHVVSNAGRSFFVFWSLMALPTMTVLISNAGDT VVKLINDYTNYLGNLTILPGDEPLGHTLKRIVHTISCGRLFPSVNRAGPDAEGLERLNEKTDQPWGDVQATVKTS ASPSLSRALSVMRSSAGVLLPTNTAASGSLSRAMTAVQNTTGVLIPTNTAERQSLNRVHDILGALPTGNDFNLLL ITEIQSVAKHLREDEPRRYSFEEWAWYLGLIGEDERKPEMHRKAIPKEERKHPRHRHHPHKHRHARRHHHSQRET HAPAASSSAPAAAVVDDDDGVEDDLLKWSWVGKYSPLVGGQEESEWILERLMMSLHESLWKTRVAHDEGLSETAA SV* |
| Coding | >Ophcf2|01369 ATGGTTGATAGTCCGCTCATCGACGCCTCTGATCCCCTGGCCCGTGTCGCCACGTCTCTTCTGCGGCCTGAGTTT CCTCTGGAGGCTCGCTTTCAGAATGACGACTCCCATCTCGTCCCCAGCCGGCTCTGGTTCGCCTCGTCGGCCTTT CCCATGGTTGCCGGCACCTTGGGACCAGTCGCCTCGGCCTTCAGCATCTGCGCCCTTGTGCGTCAATGGCGACAG CATGTCCCGCCCGAGACCGACCTCGACGCCGCAACCTTTGTGCCCGACCCTCCCTGGCTTCTCATCATCAACGCC ATCCAGCTGGCCGTTGCCCTAGTCGCCAACATCATGCTCCTACTCAACATGGCCAAGAGGGTGCGCTTCACCATT GCGCAGCCCATTACAATTGTCGGCTGGTACATCTCTTCTATCCTCCTCATAGCCTGTACCGCGACCGCCAGCGGC CCCCTGAGACGTAGCCTCGACCCTCCCGACGAATACGTCTGGTCCCAGGCCTTTTACTACGGCATCTGGGCCGCC ATTCTTTACTTCATCGTCGCCTCCCTCATGGCCGTCACCTTCTGTGGCGCCTGGTCTGGCCACTACGACAAGGAC TTTAACCTGACCAACAGCCAGCGCACCCTCATGTTGCAGACCATTGCCGTCCTGGCCTACCTGCTCATCGGCGCC CTCATCTTCTCCAAGATCGAGGACTGGCCCTACCTCGATGCTGTCTACTGGGCCGACGTGACGCTCTTCACCATC GGCTTCGGAGACTTTGCGCCCAAGACGCAGCTCGGCCGTGGCCTCTTGATCCCCTACGCGCTCGTCGGCATCATC AGCGTCGGTCTCGTCATCAGTTCCATCAGCAGCCTGATGCTCGAGCGTGGCAGCCGTCGGCTCGATGCCCGTATG GAGGAAAAGCGCCGACGGAAAGTCATAACCGCCATGACTCGCAAGGGCGAAGACGACATCCTGACTCCCCTGCCC CCGGGCCCCATCAGCAACATGAGGGTGTCGGACGATCCGCTGGCCGACGAGTTCGACCGCCGCCGCTGCGAGTTC GACCTGATGCGCATGATACAGAAGACGGCCTCGTCGCGTCGCCGCTGGCTGGCCATGGCCCTCTCGTTTAGCATC TGGGTCGTCCTCTGGCTCGTCGGCGCCGCCGTCTTCTACGCCTGCGAATGGTCGTATCAGCACTGGACCTACTTC GAGGCCTTTTACTACTGCTTCATCTCGTTGCTGACCATCGGCTACGGCGACCTTCACGTCGTCTCCAACGCTGGC CGCTCGTTCTTCGTCTTCTGGTCGCTCATGGCGCTGCCCACCATGACGGTCCTCATCTCCAACGCCGGAGACACC GTCGTCAAGCTCATCAACGACTACACAAACTACCTCGGCAACCTGACCATCCTTCCCGGCGACGAGCCCCTGGGC CACACCCTCAAGCGCATCGTCCACACCATCAGCTGCGGCCGCCTCTTCCCAAGCGTCAACCGCGCCGGCCCCGAT GCCGAAGGCCTCGAGCGCTTAAACGAGAAGACGGACCAGCCCTGGGGCGACGTCCAGGCCACGGTCAAGACGTCG GCAAGTCCCAGCCTATCACGCGCCCTGTCCGTCATGCGCAGCAGCGCCGGCGTCCTCCTGCCCACCAACACAGCC GCCAGCGGCAGCCTCTCGCGCGCAATGACGGCCGTCCAGAACACAACCGGCGTCCTCATACCCACCAACACGGCA GAGCGCCAATCCCTCAACCGCGTCCACGACATCCTCGGCGCCCTTCCCACCGGCAACGATTTCAACCTCCTGCTC ATCACCGAGATCCAATCGGTAGCCAAGCACCTACGCGAAGACGAGCCCCGACGCTACTCCTTCGAGGAATGGGCC TGGTACCTTGGCCTCATAGGCGAAGACGAGCGCAAACCCGAGATGCACCGCAAGGCCATCCCCAAGGAAGAGCGC AAGCACCCACGCCACCGCCACCACCCGCACAAGCACAGACACGCCCGGCGTCACCACCACAGCCAGCGCGAGACC CACGCCCCGGCAGCGTCGTCATCTGCCCCGGCCGCCGCCGTCGTCGACGACGACGATGGCGTGGAGGATGATCTC CTCAAGTGGTCCTGGGTCGGCAAGTACAGCCCGCTCGTCGGCGGACAGGAGGAGTCGGAGTGGATACTGGAGAGG CTGATGATGAGTCTCCACGAGTCGCTTTGGAAGACGCGCGTTGCTCACGATGAGGGCCTGTCCGAGACGGCGGCG TCGGTATGA |
| Transcript | >Ophcf2|01369 ATGGTTGATAGTCCGCTCATCGACGCCTCTGATCCCCTGGCCCGTGTCGCCACGTCTCTTCTGCGGCCTGAGTTT CCTCTGGAGGCTCGCTTTCAGAATGACGACTCCCATCTCGTCCCCAGCCGGCTCTGGTTCGCCTCGTCGGCCTTT CCCATGGTTGCCGGCACCTTGGGACCAGTCGCCTCGGCCTTCAGCATCTGCGCCCTTGTGCGTCAATGGCGACAG CATGTCCCGCCCGAGACCGACCTCGACGCCGCAACCTTTGTGCCCGACCCTCCCTGGCTTCTCATCATCAACGCC ATCCAGCTGGCCGTTGCCCTAGTCGCCAACATCATGCTCCTACTCAACATGGCCAAGAGGGTGCGCTTCACCATT GCGCAGCCCATTACAATTGTCGGCTGGTACATCTCTTCTATCCTCCTCATAGCCTGTACCGCGACCGCCAGCGGC CCCCTGAGACGTAGCCTCGACCCTCCCGACGAATACGTCTGGTCCCAGGCCTTTTACTACGGCATCTGGGCCGCC ATTCTTTACTTCATCGTCGCCTCCCTCATGGCCGTCACCTTCTGTGGCGCCTGGTCTGGCCACTACGACAAGGAC TTTAACCTGACCAACAGCCAGCGCACCCTCATGTTGCAGACCATTGCCGTCCTGGCCTACCTGCTCATCGGCGCC CTCATCTTCTCCAAGATCGAGGACTGGCCCTACCTCGATGCTGTCTACTGGGCCGACGTGACGCTCTTCACCATC GGCTTCGGAGACTTTGCGCCCAAGACGCAGCTCGGCCGTGGCCTCTTGATCCCCTACGCGCTCGTCGGCATCATC AGCGTCGGTCTCGTCATCAGTTCCATCAGCAGCCTGATGCTCGAGCGTGGCAGCCGTCGGCTCGATGCCCGTATG GAGGAAAAGCGCCGACGGAAAGTCATAACCGCCATGACTCGCAAGGGCGAAGACGACATCCTGACTCCCCTGCCC CCGGGCCCCATCAGCAACATGAGGGTGTCGGACGATCCGCTGGCCGACGAGTTCGACCGCCGCCGCTGCGAGTTC GACCTGATGCGCATGATACAGAAGACGGCCTCGTCGCGTCGCCGCTGGCTGGCCATGGCCCTCTCGTTTAGCATC TGGGTCGTCCTCTGGCTCGTCGGCGCCGCCGTCTTCTACGCCTGCGAATGGTCGTATCAGCACTGGACCTACTTC GAGGCCTTTTACTACTGCTTCATCTCGTTGCTGACCATCGGCTACGGCGACCTTCACGTCGTCTCCAACGCTGGC CGCTCGTTCTTCGTCTTCTGGTCGCTCATGGCGCTGCCCACCATGACGGTCCTCATCTCCAACGCCGGAGACACC GTCGTCAAGCTCATCAACGACTACACAAACTACCTCGGCAACCTGACCATCCTTCCCGGCGACGAGCCCCTGGGC CACACCCTCAAGCGCATCGTCCACACCATCAGCTGCGGCCGCCTCTTCCCAAGCGTCAACCGCGCCGGCCCCGAT GCCGAAGGCCTCGAGCGCTTAAACGAGAAGACGGACCAGCCCTGGGGCGACGTCCAGGCCACGGTCAAGACGTCG GCAAGTCCCAGCCTATCACGCGCCCTGTCCGTCATGCGCAGCAGCGCCGGCGTCCTCCTGCCCACCAACACAGCC GCCAGCGGCAGCCTCTCGCGCGCAATGACGGCCGTCCAGAACACAACCGGCGTCCTCATACCCACCAACACGGCA GAGCGCCAATCCCTCAACCGCGTCCACGACATCCTCGGCGCCCTTCCCACCGGCAACGATTTCAACCTCCTGCTC ATCACCGAGATCCAATCGGTAGCCAAGCACCTACGCGAAGACGAGCCCCGACGCTACTCCTTCGAGGAATGGGCC TGGTACCTTGGCCTCATAGGCGAAGACGAGCGCAAACCCGAGATGCACCGCAAGGCCATCCCCAAGGAAGAGCGC AAGCACCCACGCCACCGCCACCACCCGCACAAGCACAGACACGCCCGGCGTCACCACCACAGCCAGCGCGAGACC CACGCCCCGGCAGCGTCGTCATCTGCCCCGGCCGCCGCCGTCGTCGACGACGACGATGGCGTGGAGGATGATCTC CTCAAGTGGTCCTGGGTCGGCAAGTACAGCCCGCTCGTCGGCGGACAGGAGGAGTCGGAGTGGATACTGGAGAGG CTGATGATGAGTCTCCACGAGTCGCTTTGGAAGACGCGCGTTGCTCACGATGAGGGCCTGTCCGAGACGGCGGCG TCGGTATGA |
| Gene | >Ophcf2|01369 ATGGTTGATAGTCCGCTCATCGACGCCTCTGATCCCCTGGCCCGTGTCGCCACGTCTCTTCTGCGGCCTGAGTTT CCTCTGGAGGCTCGCTTTCAGAATGACGACTCCCATCTCGTCCCCAGCCGGCTCTGGTTCGCCTCGTCGGCCTTT CCCATGGTTGCCGGCACCTTGGGACCAGTCGCCTCGGCCTTCAGCATCTGCGCCCTTGTGCGTCAATGGCGACAG CATGTCCCGCCCGAGACCGACCTCGACGCCGCAACCTTTGTGCCCGACCCTCCCTGGTAAGAGGAGCGCCATGCT CGTCTCTTCCGCTGCTGACATTGGTTCAGGCTTCTCATCATCAACGCCATCCAGCTGGCCGTTGCCCTAGTCGCC AACATCATGCTCCTACTCAACATGGCCAAGAGGGTGCGCTTCACCATTGCGCAGCCCATTACAATTGTCGGCTGG TACATCTCTTCTATCCTCCTCATAGCCTGTACCGCGACCGCCAGCGGCCCCCTGAGACGTAGCCTCGACCCTCCC GACGAATACGTCTGGTCCCAGGCCTTTTACTACGGCATCTGGGCCGCCATTCTTTACTTCATCGTCGCCTCCCTC ATGGCCGTCACCTTCTGTGGCGCCTGGTCTGGCCACTACGACAAGGACTTTAACCTGACCAACAGCCAGCGCACC CTCATGTTGCAGACCATTGCCGTCCTGGCCTACCTGCTCATCGGCGCCCTCATCTTCTCCAAGATCGAGGACTGG CCCTACCTCGATGCTGTCTACTGGGCCGACGTGACGCTCTTCACCATCGGCTTCGGAGACTTTGCGCCCAAGACG CAGCTCGGCCGTGGCCTCTTGATCCCCTACGCGCTCGTCGGCATCATCAGCGTCGGTCTCGTCATCAGTTCCATC AGCAGCCTGATGCTCGAGCGTGGCAGCCGTCGGCTCGATGCCCGTATGGAGGAAAAGCGCCGACGGAAAGTCATA ACCGCCATGACTCGCAAGGGCGAAGACGACATCCTGACTCCCCTGCCCCCGGGCCCCATCAGCAACATGAGGGTG TCGGACGATCCGCTGGCCGACGAGTTCGACCGCCGCCGCTGCGAGTTCGACCTGATGCGCATGATACAGAAGACG GCCTCGTCGCGTCGCCGCTGGCTGGCCATGGCCCTCTCGTTTAGCATCTGGGTCGTCCTCTGGCTCGTCGGCGCC GCCGTCTTCTACGCCTGCGAATGGTCGTATCAGCACTGGACCTACTTCGAGGCCTTTTACTACTGCTTCATCTCG TTGCTGACCATCGGCTACGGCGACCTTCACGTCGTCTCCAACGCTGGCCGCTCGTTCTTCGTCTTCTGGTCGCTC ATGGCGCTGCCCACCATGACGGTCCTCATCTCCAACGCCGGAGACACCGTCGTCAAGCTCATCAACGACTACACA AACTACCTCGGCAACCTGACCATCCTTCCCGGCGACGAGCCCCTGGGCCACACCCTCAAGCGCATCGTCCACACC ATCAGCTGCGGCCGCCTCTTCCCAAGCGTCAACCGCGCCGGCCCCGATGCCGAAGGCCTCGAGCGCTTAAACGAG AAGACGGACCAGCCCTGGGGCGACGTCCAGGCCACGGTCAAGACGTCGGCAAGTCCCAGCCTATCACGCGCCCTG TCCGTCATGCGCAGCAGCGCCGGCGTCCTCCTGCCCACCAACACAGCCGCCAGCGGCAGCCTCTCGCGCGCAATG ACGGCCGTCCAGAACACAACCGGCGTCCTCATACCCACCAACACGGCAGAGCGCCAATCCCTCAACCGCGTCCAC GACATCCTCGGCGCCCTTCCCACCGGCAACGATTTCAACCTCCTGCTCATCACCGAGATCCAATCGGTAGCCAAG CACCTACGCGAAGACGAGCCCCGACGCTACTCCTTCGAGGAATGGGCCTGGTACCTTGGCCTCATAGGCGAAGAC GAGCGCAAACCCGAGATGCACCGCAAGGCCATCCCCAAGGAAGAGCGCAAGCACCCACGCCACCGCCACCACCCG CACAAGCACAGACACGCCCGGCGTCACCACCACAGCCAGCGCGAGACCCACGCCCCGGCAGCGTCGTCATCTGCC CCGGCCGCCGCCGTCGTCGACGACGACGATGGCGTGGAGGATGATCTCCTCAAGTGGTCCTGGGTCGGCAAGTAC AGCCCGCTCGTCGGCGGACAGGAGGAGTCGGAGTGGATACTGGAGAGGCTGATGATGAGTCTCCACGAGTCGCTT TGGAAGACGCGCGTTGCTCACGATGAGGGCCTGTCCGAGACGGCGGCGTCGGTATGA |