Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01363
Gene name
Locationscaffold_01:4798809..4799343
Strand-
Gene length (bp)534
Transcript length (bp)465
Coding sequence length (bp)465
Protein length (aa) 155

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02466 Tim17 Tim17/Tim22/Tim23/Pmp24 family 1.2E-31 13 119

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 58 77 19
3 87 106 19
4 113 130 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01363
MDHGRDPCPWVILNDFGGAFCMGAIGGTIWHGIKGFRNSPYGERRIGSITAIKMRAPVLGGNFGVWGGLFSTFDC
AVKGVRKKEDPYNAIIAGFFTGGSLAIRGGFKSARNGAIGCAVLLAVIEGVGITFSKLLSQSTKLEAPQPPPGME
PAAA*
Coding >Ophcf2|01363
ATGGATCACGGACGCGACCCCTGTCCGTGGGTGATTCTCAATGACTTTGGCGGTGCTTTCTGCATGGGCGCCATC
GGCGGCACCATCTGGCACGGCATCAAGGGCTTCCGCAACTCACCCTATGGCGAGAGGCGCATCGGCAGCATCACG
GCCATCAAGATGCGCGCCCCCGTCCTCGGCGGAAACTTTGGCGTCTGGGGCGGCCTCTTCTCCACCTTTGACTGC
GCTGTGAAGGGGGTGCGCAAGAAGGAAGATCCGTACAACGCCATTATTGCCGGCTTCTTCACTGGCGGCTCGCTA
GCTATCCGCGGAGGCTTCAAGTCGGCTCGAAACGGGGCCATCGGATGTGCCGTCTTGCTTGCTGTCATTGAGGGC
GTCGGCATCACTTTTAGCAAGTTGCTGTCTCAGTCGACTAAGCTTGAGGCGCCGCAGCCGCCGCCGGGCATGGAG
CCGGCCGCCGCCTAG
Transcript >Ophcf2|01363
ATGGATCACGGACGCGACCCCTGTCCGTGGGTGATTCTCAATGACTTTGGCGGTGCTTTCTGCATGGGCGCCATC
GGCGGCACCATCTGGCACGGCATCAAGGGCTTCCGCAACTCACCCTATGGCGAGAGGCGCATCGGCAGCATCACG
GCCATCAAGATGCGCGCCCCCGTCCTCGGCGGAAACTTTGGCGTCTGGGGCGGCCTCTTCTCCACCTTTGACTGC
GCTGTGAAGGGGGTGCGCAAGAAGGAAGATCCGTACAACGCCATTATTGCCGGCTTCTTCACTGGCGGCTCGCTA
GCTATCCGCGGAGGCTTCAAGTCGGCTCGAAACGGGGCCATCGGATGTGCCGTCTTGCTTGCTGTCATTGAGGGC
GTCGGCATCACTTTTAGCAAGTTGCTGTCTCAGTCGACTAAGCTTGAGGCGCCGCAGCCGCCGCCGGGCATGGAG
CCGGCCGCCGCCTAG
Gene >Ophcf2|01363
ATGGATCACGGACGCGACCCCTGTCCGTGGGTGATTCTCAATGACTTTGGCGGTGCTTTCTGCATGGGCGTACGT
CTTTCGGATTTCTTGCCCTTTTTTTTTTTTTCTTTCTCTGGCGAGGCTGACTCCTGCGGCAAGGCCATCGGCGGC
ACCATCTGGCACGGCATCAAGGGCTTCCGCAACTCACCCTATGGCGAGAGGCGCATCGGCAGCATCACGGCCATC
AAGATGCGCGCCCCCGTCCTCGGCGGAAACTTTGGCGTCTGGGGCGGCCTCTTCTCCACCTTTGACTGCGCTGTG
AAGGGGGTGCGCAAGAAGGAAGATCCGTACAACGCCATTATTGCCGGCTTCTTCACTGGCGGCTCGCTAGCTATC
CGCGGAGGCTTCAAGTCGGCTCGAAACGGGGCCATCGGATGTGCCGTCTTGCTTGCTGTCATTGAGGGCGTCGGC
ATCACTTTTAGCAAGTTGCTGTCTCAGTCGACTAAGCTTGAGGCGCCGCAGCCGCCGCCGGGCATGGAGCCGGCC
GCCGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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