Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|01348
Gene name
Locationscaffold_01:4759412..4759910
Strand-
Gene length (bp)498
Transcript length (bp)498
Coding sequence length (bp)498
Protein length (aa) 166

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 2.4E-08 121 164

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 46 0.45

Transmembrane Domains

Domain # Start End Length
1 84 106 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|01348
MPDSDDERLPEGMTRIGYDADSQIYTFRDTDGSYWESAPGCRHGRLTRVGDCGPDTEQQQQQQPFLHDHHQQPFI
SWRHEMMPLLNFGLLIGLSLLLLFWYLHWAADDSSPTLSQCASPPYVVRSGDTCWAIARARRLTVEDVIARNPAL
DCRRLAVGALLCLPP*
Coding >Ophcf2|01348
ATGCCCGATTCCGACGACGAACGCCTCCCAGAGGGCATGACACGGATCGGATACGACGCCGACTCCCAAATATAC
ACCTTCCGCGACACGGATGGCTCGTACTGGGAATCCGCCCCGGGCTGCCGCCACGGCCGTCTCACGCGCGTCGGC
GACTGCGGCCCAGACACGGAGCAGCAGCAGCAACAGCAGCCATTCCTCCACGACCACCACCAACAACCCTTCATC
TCATGGCGCCACGAGATGATGCCCCTGCTCAACTTCGGCCTCCTCATTGGCCTCAGCCTCCTCCTCCTCTTCTGG
TACCTCCACTGGGCCGCCGACGATTCCTCCCCGACCCTGAGCCAGTGCGCCAGCCCGCCTTACGTCGTCCGCTCG
GGTGACACCTGCTGGGCCATCGCCCGCGCCAGACGCCTCACTGTCGAAGACGTCATCGCCCGAAATCCCGCCCTC
GACTGTCGCCGTCTGGCCGTTGGTGCCCTGCTGTGTTTACCGCCTTGA
Transcript >Ophcf2|01348
ATGCCCGATTCCGACGACGAACGCCTCCCAGAGGGCATGACACGGATCGGATACGACGCCGACTCCCAAATATAC
ACCTTCCGCGACACGGATGGCTCGTACTGGGAATCCGCCCCGGGCTGCCGCCACGGCCGTCTCACGCGCGTCGGC
GACTGCGGCCCAGACACGGAGCAGCAGCAGCAACAGCAGCCATTCCTCCACGACCACCACCAACAACCCTTCATC
TCATGGCGCCACGAGATGATGCCCCTGCTCAACTTCGGCCTCCTCATTGGCCTCAGCCTCCTCCTCCTCTTCTGG
TACCTCCACTGGGCCGCCGACGATTCCTCCCCGACCCTGAGCCAGTGCGCCAGCCCGCCTTACGTCGTCCGCTCG
GGTGACACCTGCTGGGCCATCGCCCGCGCCAGACGCCTCACTGTCGAAGACGTCATCGCCCGAAATCCCGCCCTC
GACTGTCGCCGTCTGGCCGTTGGTGCCCTGCTGTGTTTACCGCCTTGA
Gene >Ophcf2|01348
ATGCCCGATTCCGACGACGAACGCCTCCCAGAGGGCATGACACGGATCGGATACGACGCCGACTCCCAAATATAC
ACCTTCCGCGACACGGATGGCTCGTACTGGGAATCCGCCCCGGGCTGCCGCCACGGCCGTCTCACGCGCGTCGGC
GACTGCGGCCCAGACACGGAGCAGCAGCAGCAACAGCAGCCATTCCTCCACGACCACCACCAACAACCCTTCATC
TCATGGCGCCACGAGATGATGCCCCTGCTCAACTTCGGCCTCCTCATTGGCCTCAGCCTCCTCCTCCTCTTCTGG
TACCTCCACTGGGCCGCCGACGATTCCTCCCCGACCCTGAGCCAGTGCGCCAGCCCGCCTTACGTCGTCCGCTCG
GGTGACACCTGCTGGGCCATCGCCCGCGCCAGACGCCTCACTGTCGAAGACGTCATCGCCCGAAATCCCGCCCTC
GACTGTCGCCGTCTGGCCGTTGGTGCCCTGCTGTGTTTACCGCCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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