© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01338 |
| Gene name | |
| Location | scaffold_01:4729034..4730900 |
| Strand | - |
| Gene length (bp) | 1866 |
| Transcript length (bp) | 1620 |
| Coding sequence length (bp) | 1620 |
| Protein length (aa) | 540 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.5E-82 | 42 | 504 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.5E-23 | 76 | 453 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | 0.0957 | 0.1002 | 0.186 | 0.6082 | 0.0385 | 0.0008 | 0.1786 | 0.3707 | 0.2839 | 0.0137 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 61 | 22 |
| 2 | 81 | 103 | 22 |
| 3 | 112 | 134 | 22 |
| 4 | 291 | 313 | 22 |
| 5 | 358 | 380 | 22 |
| 6 | 404 | 426 | 22 |
| 7 | 431 | 453 | 22 |
| 8 | 468 | 490 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 488 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01338 MAEPHVSPHDDEVKAEAAEGRPRLETVVWYREPHLRKLYFLCLFLLIGSATTGFDGMLQNTSQQMDAWKAFFPEY VDANKLGILINMYNVGSITSFFASSYMADVLGRKPTIMVGCVIMIAGSCVTALSNGYGMYLGGRFVIGFGNSLVQ VCSPMLLTELCHPQHRGPLTTVYNCLWNLGSLMVSVVGWGTASVDNDWSWRSITLLQAVPSLVQLIGVWGVPESP RFLVNKGRSREALAVLAKYHGGGDANKPTVRYEFREIKQTIEMERKINKTSSYLEFFKTKGNRWRLAIVVSLGII SQYSGNALFSNYIDIVYEGAGIRDQNKKLALTAGRTIMDLCVSIASALCVDKVGRRPLFLVAISGMVVAFACWTV VGAVYESSAVRDPGGSVSYTNAAAGFAQIAFVWLFLIFYDIGFSGLLVAYALEILPFHLRAKGMVILNIVVQAVL AIGNQTNKLAWNNLPRHWNFMLFYTLWNFCELIFVYFFYVETKGPTLEEIARIFDGQDAVPRVNLEQTEKEARLA SNHDQSSISDTKAV* |
| Coding | >Ophcf2|01338 ATGGCTGAACCCCATGTTTCGCCCCATGATGACGAGGTCAAGGCAGAGGCAGCCGAGGGGCGGCCTCGCCTGGAG ACGGTCGTCTGGTACAGGGAGCCTCATCTCCGCAAGCTCTACTTCCTGTGCCTCTTTCTGCTCATCGGCTCCGCC ACTACCGGCTTCGATGGCATGCTGCAGAACACGTCGCAGCAGATGGACGCCTGGAAGGCCTTCTTTCCCGAATAC GTCGATGCTAACAAGCTGGGCATTCTCATCAACATGTACAACGTCGGCTCCATCACTTCTTTCTTCGCCTCGTCC TACATGGCCGATGTACTCGGCCGCAAGCCTACCATCATGGTCGGCTGCGTCATCATGATAGCCGGCAGCTGCGTG ACCGCCCTGAGCAACGGATACGGGATGTATCTTGGAGGCCGCTTCGTCATCGGCTTTGGCAATTCGCTGGTCCAG GTTTGCTCTCCAATGCTTCTGACCGAGCTCTGCCATCCCCAGCACCGTGGCCCGTTGACGACTGTCTATAATTGC CTATGGAACCTGGGCTCCCTGATGGTGTCCGTCGTTGGCTGGGGCACTGCGTCAGTCGACAACGACTGGTCCTGG CGGTCCATCACCCTTTTGCAGGCGGTGCCTTCTCTTGTTCAGCTCATTGGTGTCTGGGGAGTGCCCGAGTCGCCC CGGTTTCTCGTCAACAAAGGCCGGTCCAGAGAGGCCCTGGCCGTTTTGGCGAAATACCATGGTGGCGGCGACGCC AACAAGCCTACCGTTCGCTATGAGTTCCGCGAGATCAAGCAGACCATCGAGATGGAGCGCAAGATTAACAAGACG TCGAGCTACCTCGAGTTCTTCAAGACCAAGGGAAACCGCTGGCGGCTGGCTATCGTCGTTTCCCTGGGCATCATC TCTCAGTACAGCGGCAACGCTCTCTTTTCAAACTACATTGACATCGTCTACGAGGGCGCCGGCATCCGTGACCAG AACAAAAAGCTCGCGTTGACCGCGGGCAGAACCATCATGGACCTCTGCGTCTCCATTGCCTCGGCTCTATGCGTC GACAAGGTCGGGCGCCGTCCCCTCTTCCTCGTCGCCATCTCGGGCATGGTCGTTGCCTTTGCCTGCTGGACCGTC GTGGGAGCCGTGTACGAGAGCTCGGCCGTCCGGGATCCCGGAGGCAGCGTGTCATACACGAATGCAGCGGCGGGC TTTGCCCAGATTGCCTTTGTATGGCTCTTCCTCATCTTTTACGACATTGGCTTCTCCGGCTTGCTCGTCGCCTAC GCGCTGGAGATTCTCCCCTTTCACCTGCGCGCCAAGGGCATGGTGATCCTCAACATTGTGGTCCAGGCTGTGCTC GCGATCGGCAACCAGACGAACAAACTTGCGTGGAACAACCTCCCTCGACATTGGAACTTTATGCTCTTTTACACG CTGTGGAACTTTTGCGAGCTCATATTCGTCTACTTCTTCTATGTCGAGACCAAGGGGCCTACGCTGGAGGAGATT GCGCGCATCTTTGACGGCCAAGATGCCGTCCCGCGCGTCAACTTGGAGCAGACGGAAAAGGAGGCGCGTCTGGCT TCCAACCACGATCAAAGTTCCATCTCGGACACGAAGGCCGTATGA |
| Transcript | >Ophcf2|01338 ATGGCTGAACCCCATGTTTCGCCCCATGATGACGAGGTCAAGGCAGAGGCAGCCGAGGGGCGGCCTCGCCTGGAG ACGGTCGTCTGGTACAGGGAGCCTCATCTCCGCAAGCTCTACTTCCTGTGCCTCTTTCTGCTCATCGGCTCCGCC ACTACCGGCTTCGATGGCATGCTGCAGAACACGTCGCAGCAGATGGACGCCTGGAAGGCCTTCTTTCCCGAATAC GTCGATGCTAACAAGCTGGGCATTCTCATCAACATGTACAACGTCGGCTCCATCACTTCTTTCTTCGCCTCGTCC TACATGGCCGATGTACTCGGCCGCAAGCCTACCATCATGGTCGGCTGCGTCATCATGATAGCCGGCAGCTGCGTG ACCGCCCTGAGCAACGGATACGGGATGTATCTTGGAGGCCGCTTCGTCATCGGCTTTGGCAATTCGCTGGTCCAG GTTTGCTCTCCAATGCTTCTGACCGAGCTCTGCCATCCCCAGCACCGTGGCCCGTTGACGACTGTCTATAATTGC CTATGGAACCTGGGCTCCCTGATGGTGTCCGTCGTTGGCTGGGGCACTGCGTCAGTCGACAACGACTGGTCCTGG CGGTCCATCACCCTTTTGCAGGCGGTGCCTTCTCTTGTTCAGCTCATTGGTGTCTGGGGAGTGCCCGAGTCGCCC CGGTTTCTCGTCAACAAAGGCCGGTCCAGAGAGGCCCTGGCCGTTTTGGCGAAATACCATGGTGGCGGCGACGCC AACAAGCCTACCGTTCGCTATGAGTTCCGCGAGATCAAGCAGACCATCGAGATGGAGCGCAAGATTAACAAGACG TCGAGCTACCTCGAGTTCTTCAAGACCAAGGGAAACCGCTGGCGGCTGGCTATCGTCGTTTCCCTGGGCATCATC TCTCAGTACAGCGGCAACGCTCTCTTTTCAAACTACATTGACATCGTCTACGAGGGCGCCGGCATCCGTGACCAG AACAAAAAGCTCGCGTTGACCGCGGGCAGAACCATCATGGACCTCTGCGTCTCCATTGCCTCGGCTCTATGCGTC GACAAGGTCGGGCGCCGTCCCCTCTTCCTCGTCGCCATCTCGGGCATGGTCGTTGCCTTTGCCTGCTGGACCGTC GTGGGAGCCGTGTACGAGAGCTCGGCCGTCCGGGATCCCGGAGGCAGCGTGTCATACACGAATGCAGCGGCGGGC TTTGCCCAGATTGCCTTTGTATGGCTCTTCCTCATCTTTTACGACATTGGCTTCTCCGGCTTGCTCGTCGCCTAC GCGCTGGAGATTCTCCCCTTTCACCTGCGCGCCAAGGGCATGGTGATCCTCAACATTGTGGTCCAGGCTGTGCTC GCGATCGGCAACCAGACGAACAAACTTGCGTGGAACAACCTCCCTCGACATTGGAACTTTATGCTCTTTTACACG CTGTGGAACTTTTGCGAGCTCATATTCGTCTACTTCTTCTATGTCGAGACCAAGGGGCCTACGCTGGAGGAGATT GCGCGCATCTTTGACGGCCAAGATGCCGTCCCGCGCGTCAACTTGGAGCAGACGGAAAAGGAGGCGCGTCTGGCT TCCAACCACGATCAAAGTTCCATCTCGGACACGAAGGCCGTATGA |
| Gene | >Ophcf2|01338 ATGGCTGAACCCCATGTTTCGCCCCATGATGACGAGGTCAAGGCAGAGGCAGCCGAGGGGCGGCCTCGCCTGGAG ACGGTCGTCTGGTACAGGGAGCCTCATCTCCGCAAGCTCTACTTCCTGTGCCTCTTTCTGCTCATCGGCTCCGCC ACTACCGGCTTCGATGGCATGCTGCAGAACACGTCGCAGCAGATGGACGCCTGGAAGGCCTTCTTTCCCGAATAC GTCGATGCTAACAAGCTGGGCATTCTCATCAACATGTACAACGTCGGCTCCATCACTTCTTTCTTCGCCTCGTCC TACATGGCCGATGTACTCGGCCGCAAGCCTACCATCATGGTCGGCTGCGTCATCATGATAGCCGGCAGCTGCGTG ACCGCCCTGAGCAACGGATACGGGAGTGAGTCTCGACGGCTTTCTCCAGTTTTCTTGGCATCCCAGCTGACGGAC CATCAGTGTATCTTGGAGGCCGCTTCGTCATCGGCTTTGGCAATTCGCTGGTCCAGGTTTGCTCTCCAATGCTTC TGACCGAGCTCTGCCATCCCCAGCACCGTGGCCCGTTGACGACTGTCTATAATTGCCTATGGAACCTGGGCTCCC TGAGTGCGTGCTCCGAACATCTGCGTACTCTCGTGTCACCAAGCTGACGACATGTCCTCCCCTGAACTTTCGCAG TGGTGTCCGTCGTTGGCTGGGGCACTGCGTCAGTCGACAACGACTGGTCCTGGCGGTCCATCACCCTTTTGCAGG CGGTGCCTTCTCTTGTTCAGCTCATTGGTGTCTGGGGAGTGCCCGAGTCGCCCCGGTTTCTCGTCAACAAAGGCC GGTCCAGAGAGGCCCTGGCCGTTTTGGCGAAATACCATGGTGGCGGCGACGCCAACAAGCCTACCGTTCGCTATG AGTTCCGCGAGATCAAGCAGACCATCGAGATGGAGCGCAAGATTAACAAGACGTCGAGCTACCTCGAGTTCTTCA AGACCAAGGGAAACCGCTGGCGGCTGGCTATCGTCGTTTCCCTGGGCATCATCTCTCAGTACAGCGGCAACGCTC TCTTTTCAAACTACATTGACATCGTCTACGAGGGCGCCGGCATCCGTGACCAGAACAAAAAGCTCGCGGTACTTG TGCCGGATCCCCTATTCGAGGCTCCAAGCTGACCATGGACGCCAGTTGACCGCGGGCAGAACCATCATGGACCTC TGCGTCTCCATTGCCTCGGCTCTATGCGTCGACAAGGTCGGGCGCCGTCCCCTCTTCCTCGTCGCCATCTCGGGC ATGGTCGTTGCCTTTGCCTGCTGGACCGTCGTGGGAGCCGTGTACGAGAGCTCGGCCGTCCGGGATCCCGGAGGC AGCGTGTCATACACGAATGCAGCGGCGGGCTTTGCCCAGATTGCCTTTGTATGGCTCTTCCTCATCTTTTACGAC ATTGGCTTCTCCGGCTTGCTCGTCGCCTACGCGCTGGAGATTCTCCCCTTTCACCTGCGCGCCAAGGGCATGGTG ATCCTCAACATTGTGGTCCAGGCTGTGCTCGCGATCGGCAAGTGAGTCAACTCCCTCTTCTTTCTGCTGCCGAGA CGGCTGACGGGATCCATGTCCCCCACGAATAGCCAGACGAACAAACTTGCGTGGAACAACCTCCCTCGACATTGG AACTTTATGCTCTTTTACACGCTGTGGAACTTTTGCGAGCTCATATTCGTCTACTTCTTCTATGTCGAGACCAAG GGGCCTACGCTGGAGGAGATTGCGCGCATCTTTGACGGCCAAGATGCCGTCCCGCGCGTCAACTTGGAGCAGACG GAAAAGGAGGCGCGTCTGGCTTCCAACCACGATCAAAGTTCCATCTCGGACACGAAGGCCGTATGA |