© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01280 |
| Gene name | |
| Location | scaffold_01:4577502..4578116 |
| Strand | + |
| Gene length (bp) | 614 |
| Transcript length (bp) | 315 |
| Coding sequence length (bp) | 315 |
| Protein length (aa) | 105 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02939 | UcrQ | UcrQ family | 2.4E-33 | 24 | 99 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005750 | mitochondrial respiratory chain complex III | Yes |
| GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | Yes |
| GO:0009060 | aerobic respiration | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006091 | generation of precursor metabolites and energy | No |
| GO:0009987 | cellular process | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0070069 | cytochrome complex | No |
| GO:0022900 | electron transport chain | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:1902495 | transmembrane transporter complex | No |
| GO:0098803 | respiratory chain complex | No |
| GO:0019646 | aerobic electron transport chain | No |
| GO:0045333 | cellular respiration | No |
| GO:1990204 | oxidoreductase complex | No |
| GO:0005575 | cellular_component | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0045275 | respiratory chain complex III | No |
| GO:0015980 | energy derivation by oxidation of organic compounds | No |
| GO:0098796 | membrane protein complex | No |
| GO:0022904 | respiratory electron transport chain | No |
| GO:0008150 | biological_process | No |
| GO:1990351 | transporter complex | No |
| GO:1902494 | catalytic complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 67 | 85 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01280 MRPTRFLLSDAAPDWRTGSYLGPWGAMGGTKQKGIIHFGVSANRQNAMAGAGHDAIFNTFRRTKSQIAYWLLPMV GGYYILNWAIERNEYLNSKAGRAEFGDAA* |
| Coding | >Ophcf2|01280 ATGAGACCGACGCGTTTCCTTCTCAGCGATGCCGCTCCCGATTGGAGGACTGGCAGCTATCTCGGCCCTTGGGGG GCGATGGGCGGCACGAAGCAGAAGGGCATCATCCACTTTGGCGTCTCGGCCAATCGTCAGAATGCCATGGCCGGC GCGGGCCACGACGCCATCTTCAACACCTTCCGCCGCACCAAGTCCCAGATAGCCTACTGGCTGCTGCCCATGGTT GGCGGCTACTACATCCTGAACTGGGCCATCGAGCGCAACGAATATCTCAACTCCAAGGCTGGTCGCGCTGAGTTT GGCGATGCGGCGTAG |
| Transcript | >Ophcf2|01280 ATGAGACCGACGCGTTTCCTTCTCAGCGATGCCGCTCCCGATTGGAGGACTGGCAGCTATCTCGGCCCTTGGGGG GCGATGGGCGGCACGAAGCAGAAGGGCATCATCCACTTTGGCGTCTCGGCCAATCGTCAGAATGCCATGGCCGGC GCGGGCCACGACGCCATCTTCAACACCTTCCGCCGCACCAAGTCCCAGATAGCCTACTGGCTGCTGCCCATGGTT GGCGGCTACTACATCCTGAACTGGGCCATCGAGCGCAACGAATATCTCAACTCCAAGGCTGGTCGCGCTGAGTTT GGCGATGCGGCGTAG |
| Gene | >Ophcf2|01280 ATGAGACCGACGCGTTTCCTTCTCAGCGATGCCGCTCCCGATTGGAGGACTGGCAGGTACGTGACTGACGTCTGG CCGAGGCGGAGACACTTGGCTCGTTGCTTCGAGTGGAAGGGGGTTGGCAGAAGGCTGATTCGCGGTGTCGCAGCT ATCTCGGCCCTTGGGGGGCGATGGGTGAGTTTCCTCCTCCTCGAGTCCGAGTGAAGGCGAGTGGATCGGAGCACC GGCCTTGAGATGGCTCCGGACGCCGAAGCTGCAAGCGGATCATCGCAAAGACGGCGCTGATGCACGGAGCAGGCG GCACGAAGCAGAAGGGCATCATCCACTTTGGCGTCTCGGCCAATCGTCAGAATGCCATGGCCGGCGCGGGCCACG ACGCCATCTTCAACACCTTCCGCCGCACCAAGTCCCAGATAGCCTACTGGCTGCTGCCCATGGTTGGCGGCTACT ACATCCTGAACTGGGCCATCGAGCGGTGAGGACGGAACCCGTCTCCCTTCCTACGTGGGCTGGACTAGGGATGAA AAGACGGTGAAGGCTGACTCGCGGTTTTTCCCAGCAACGAATATCTCAACTCCAAGGCTGGTCGCGCTGAGTTTG GCGATGCGGCGTAG |