© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01260 |
| Gene name | |
| Location | scaffold_01:4523053..4524665 |
| Strand | + |
| Gene length (bp) | 1612 |
| Transcript length (bp) | 1362 |
| Coding sequence length (bp) | 1362 |
| Protein length (aa) | 454 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 5.3E-22 | 96 | 260 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 5.7E-24 | 298 | 440 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 70 | 89 | 19 |
| 2 | 93 | 115 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 164 | 183 | 19 |
| 5 | 204 | 226 | 22 |
| 6 | 236 | 258 | 22 |
| 7 | 294 | 316 | 22 |
| 8 | 331 | 353 | 22 |
| 9 | 366 | 388 | 22 |
| 10 | 398 | 415 | 17 |
| 11 | 422 | 444 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 85.54 | 49.23 | 121.86 |
| Alive | In ants, during behavior modification | 85.76 | 48.58 | 122.94 |
| Dead | In ants, recently dead | 64.67 | 36.67 | 92.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.992473 | no |
| Alive | Dead | 0.084038 | no |
| Dead | Fungus | 0.142099 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01260 MNRKHDVAGERTPLINGGEQSNRASPPVLRNGRSGVCAFFLDSKRTPGTESGNVAVRGLAHTWHVTKVTLLSNYV NFLLVFVPLGIVAGACQWSPTAVFTINFFAIIPLAAVLSFATEEISIKLGETLGGLLNATFGNAVELIVSIVALR DGQIEVVQSSMLGSILSNLLLVMGMCFLFGGIVHRGQNGEGTEQRFSSAVAQTTCSLMTLSSASLVIPAALYAVL TQNGSDEKQTSILILSRGTAIILLLLYVLYLVFQLRTHSNLFDPETPPETATEAIQREAVEEQTPSMSAPAAAAV LVVVTILVAICADYLVGSIDHIVATAHISKAFLGMILIPIVGNAAEHVTAVVVALRDKMDLAMGVAIGSSIQIAL GATPFLVIVGWIIGQPMSLHFETFQTVAFAVSVLVVTYTVQDGRSNYLEGAMLLALYIIIAVAFYATPSDAIDKS YRN* |
| Coding | >Ophcf2|01260 ATGAATCGCAAACACGACGTCGCTGGCGAGCGTACGCCTCTCATCAACGGGGGGGAACAGTCGAATCGGGCGTCG CCTCCTGTGCTGCGGAACGGTCGGTCTGGTGTCTGTGCCTTTTTCTTGGATTCGAAGCGGACGCCTGGGACGGAG AGTGGAAATGTGGCGGTTCGCGGTCTGGCACATACGTGGCATGTCACCAAGGTGACGCTTCTTAGCAACTATGTC AACTTTCTTCTCGTCTTCGTGCCTCTCGGCATAGTCGCCGGCGCTTGTCAATGGAGCCCGACGGCCGTCTTTACA ATCAACTTCTTCGCCATCATCCCCCTCGCTGCCGTTCTTTCCTTTGCGACCGAGGAGATTTCCATCAAGCTTGGC GAGACTTTGGGCGGTCTTCTTAACGCTACATTTGGCAATGCCGTTGAGCTGATTGTCAGCATTGTTGCCCTCAGG GACGGTCAGATCGAGGTGGTGCAATCGTCTATGCTAGGGTCTATCCTGTCCAACTTGCTGCTTGTCATGGGCATG TGCTTCCTTTTCGGCGGCATCGTTCACCGCGGTCAAAACGGCGAAGGCACCGAGCAGCGCTTCTCCTCCGCCGTC GCTCAGACTACCTGCTCCCTCATGACGCTCTCGTCCGCCTCCCTCGTCATCCCTGCTGCTCTCTATGCCGTCCTT ACCCAGAACGGCTCGGATGAGAAGCAAACCAGCATTCTCATCCTATCGAGAGGCACCGCAATTATCCTCTTGCTG CTTTACGTCCTCTATCTCGTCTTCCAGTTGCGCACCCACAGCAACCTGTTCGACCCCGAAACCCCCCCGGAGACG GCCACCGAGGCTATCCAACGCGAGGCTGTGGAGGAGCAGACGCCGTCGATGAGTGCGCCCGCTGCAGCCGCCGTC CTCGTCGTCGTCACCATCCTCGTCGCCATCTGTGCCGATTACCTGGTTGGCAGCATCGATCACATCGTCGCCACC GCCCACATCAGCAAGGCTTTCCTCGGCATGATTCTCATTCCTATTGTTGGCAACGCAGCCGAGCACGTCACCGCA GTTGTCGTGGCCCTTCGCGACAAGATGGACCTAGCCATGGGCGTCGCTATCGGCTCATCGATACAGATTGCCCTC GGCGCCACGCCTTTCCTCGTCATCGTCGGTTGGATCATCGGACAGCCCATGTCGCTGCATTTTGAGACGTTTCAA ACTGTCGCCTTTGCCGTCTCCGTCTTGGTCGTCACCTACACTGTTCAGGACGGACGCTCCAACTACCTCGAGGGC GCCATGCTGCTCGCCCTGTACATCATCATTGCCGTCGCCTTTTACGCGACGCCCAGCGACGCCATCGACAAATCT TACCGCAACTAA |
| Transcript | >Ophcf2|01260 ATGAATCGCAAACACGACGTCGCTGGCGAGCGTACGCCTCTCATCAACGGGGGGGAACAGTCGAATCGGGCGTCG CCTCCTGTGCTGCGGAACGGTCGGTCTGGTGTCTGTGCCTTTTTCTTGGATTCGAAGCGGACGCCTGGGACGGAG AGTGGAAATGTGGCGGTTCGCGGTCTGGCACATACGTGGCATGTCACCAAGGTGACGCTTCTTAGCAACTATGTC AACTTTCTTCTCGTCTTCGTGCCTCTCGGCATAGTCGCCGGCGCTTGTCAATGGAGCCCGACGGCCGTCTTTACA ATCAACTTCTTCGCCATCATCCCCCTCGCTGCCGTTCTTTCCTTTGCGACCGAGGAGATTTCCATCAAGCTTGGC GAGACTTTGGGCGGTCTTCTTAACGCTACATTTGGCAATGCCGTTGAGCTGATTGTCAGCATTGTTGCCCTCAGG GACGGTCAGATCGAGGTGGTGCAATCGTCTATGCTAGGGTCTATCCTGTCCAACTTGCTGCTTGTCATGGGCATG TGCTTCCTTTTCGGCGGCATCGTTCACCGCGGTCAAAACGGCGAAGGCACCGAGCAGCGCTTCTCCTCCGCCGTC GCTCAGACTACCTGCTCCCTCATGACGCTCTCGTCCGCCTCCCTCGTCATCCCTGCTGCTCTCTATGCCGTCCTT ACCCAGAACGGCTCGGATGAGAAGCAAACCAGCATTCTCATCCTATCGAGAGGCACCGCAATTATCCTCTTGCTG CTTTACGTCCTCTATCTCGTCTTCCAGTTGCGCACCCACAGCAACCTGTTCGACCCCGAAACCCCCCCGGAGACG GCCACCGAGGCTATCCAACGCGAGGCTGTGGAGGAGCAGACGCCGTCGATGAGTGCGCCCGCTGCAGCCGCCGTC CTCGTCGTCGTCACCATCCTCGTCGCCATCTGTGCCGATTACCTGGTTGGCAGCATCGATCACATCGTCGCCACC GCCCACATCAGCAAGGCTTTCCTCGGCATGATTCTCATTCCTATTGTTGGCAACGCAGCCGAGCACGTCACCGCA GTTGTCGTGGCCCTTCGCGACAAGATGGACCTAGCCATGGGCGTCGCTATCGGCTCATCGATACAGATTGCCCTC GGCGCCACGCCTTTCCTCGTCATCGTCGGTTGGATCATCGGACAGCCCATGTCGCTGCATTTTGAGACGTTTCAA ACTGTCGCCTTTGCCGTCTCCGTCTTGGTCGTCACCTACACTGTTCAGGACGGACGCTCCAACTACCTCGAGGGC GCCATGCTGCTCGCCCTGTACATCATCATTGCCGTCGCCTTTTACGCGACGCCCAGCGACGCCATCGACAAATCT TACCGCAACTAA |
| Gene | >Ophcf2|01260 ATGAATCGCAAACACGACGTCGCTGGCGAGCGTACGCCTCTCATCAACGGGGGGGAACAGTCGAATCGGGCGTCG CCTCCTGTGCTGCGGAACGGTCGGTCTGGTGTCTGTGCCTTTTTCTTGGATTCGAAGCGGACGCCTGGGACGGAG AGTGGAAATGTGGCGGTTCGCGGTCTGGCACATACGTGGCATGTCACCAAGGTGACGCTTCTTAGCAGTATGTGT CGTTGTCGCCGCCTTGGATGGTTGTGGATGACGATGGCTGACGGGACAGGACAACAGACTATGTCAACTTTCTTC TCGTCTTCGTGCCTCTCGGCATAGTCGCCGGCGCTTGTCAATGGAGCCCGACGGCCGTCTTTACAATCAACTTCT TCGCCATCATCCCCCTCGCTGCCGTTCTTTCCTTTGCGACCGAGGAGATTTCCATCAAGCTTGGCGAGACTTTGG GCGGTCTTCTTAACGCTACATTTGGCAATGCCGTTGAGCTGATTGTTCGTCCACCCCTGGTTTGTTCCTATCTTG GCCTGCGCGCTGACTGTCTTCATCAGGTCAGCATTGTTGCCCTCAGGGACGGTCAGATCGAGGTGGTGCAATCGT CTATGCTAGGGTCTATCCTGTCCAACTTGCTGCTTGTCATGGGCATGTGCTTCCTTTTCGGCGGCATCGTTCACC GCGGTCAAAACGGCGAAGGCACCGAGCAGCGCTTCTCCTCCGCCGTCGCTCAGACTACCTGCTCCCTCATGACGC TCTCGTCCGCCTCCCTCGTCATCCCTGCTGCTGTGAGTTTGAGTCGTCCATCGGATCCTTCTCTTATTCAGGAGC TGACATGCCGACCTCCTCGCAGCTCTATGCCGTCCTTACCCAGAACGGCTCGGATGAGAAGCAAACCAGCATTCT CATCCTATCGAGAGGCACCGCAATTATCCTCTTGCTGCTTTACGTCCTCTATCTCGTCTTCCAGTTGCGCACCCA CAGCAACCTGTTCGACCCCGAAACCCCCCCGGAGACGGCCACCGAGGCTATCCAACGCGAGGCTGTGGAGGAGCA GACGCCGTCGATGAGTGCGCCCGCTGCAGCCGCCGTCCTCGTCGTCGTCACCATCCTCGTCGCCATCTGTGCCGA TTACCTGGTTGGCAGCATCGATCACATCGTCGCCACCGCCCACATCAGCAAGGCTTTCCTCGGCATGATTCTCAT TCCTATTGTTGGCAACGCAGCCGAGCACGTCACCGCAGTTGTCGTGGCCCTTCGCGACAAGATGGACCTAGCCAT GGGCGTCGCTATCGGCTCATCGATACAGATTGCCCTCGGCGCCACGCCTTTCCTCGTCATCGTCGGTTGGATCAT CGGACAGCCCATGTCGCTGCATTTTGAGACGTGTACGTTGATGTTTCCGCCCTCACTGAAGAAGCCAAGTCTCGT CGTACTGACCGCTTAATCAGTTCAAACTGTCGCCTTTGCCGTCTCCGTCTTGGTCGTCACCTACACTGTTCAGGA CGGACGCTCCAACTACCTCGAGGGCGCCATGCTGCTCGCCCTGTACATCATCATTGCCGTCGCCTTTTACGCGAC GCCCAGCGACGCCATCGACAAATCTTACCGCAACTAA |