© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01234 |
| Gene name | |
| Location | scaffold_01:4452918..4453729 |
| Strand | - |
| Gene length (bp) | 811 |
| Transcript length (bp) | 615 |
| Coding sequence length (bp) | 615 |
| Protein length (aa) | 205 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04191 | PEMT | Phospholipid methyltransferase | 6.8E-32 | 89 | 189 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 30 | 18 |
| 2 | 50 | 69 | 19 |
| 3 | 89 | 111 | 22 |
| 4 | 146 | 168 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 342.97 | 194.04 | 491.90 |
| Alive | In ants, during behavior modification | 132.35 | 64.19 | 200.52 |
| Dead | In ants, recently dead | 120.64 | 66.30 | 174.99 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.656994 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01234 MAPLIDFDKQSLLVSLCSITFNPLFWNIVARQEYHNKLLTKLFGGQSRRACYALALTIFSLGLVRDWLYKRAIQE QPSHALLLTPASRLAGISLVLAGNVLVLSSTWALGITGTFLGDYFGILMDDMVTGFPFNVCGAPMYWGSTMSFLG TALLLGKPAGVFITAWVYMMYCAALRYEDPFTSAIYAKRERERAAMGGVAKKHM* |
| Coding | >Ophcf2|01234 ATGGCGCCTCTTATCGACTTTGACAAGCAGAGCTTGCTGGTCTCCCTCTGCTCCATCACCTTCAACCCGCTGTTC TGGAACATCGTCGCCCGCCAAGAATACCACAACAAGCTGCTCACCAAGCTCTTCGGCGGCCAGTCCCGCCGCGCG TGCTACGCCCTCGCCTTGACCATCTTCTCCCTCGGCCTGGTACGCGACTGGCTCTACAAGCGGGCAATTCAAGAG CAGCCCTCTCACGCGCTGCTGCTAACGCCGGCGTCGCGCCTCGCCGGCATCTCCCTTGTGCTCGCCGGCAACGTC CTCGTCTTGTCGTCTACGTGGGCGCTCGGCATCACGGGCACCTTCTTGGGCGACTACTTCGGTATCCTGATGGAC GACATGGTGACGGGCTTTCCCTTCAACGTCTGCGGCGCTCCCATGTACTGGGGTTCTACCATGAGTTTCCTCGGC ACTGCACTGCTGTTGGGGAAGCCCGCCGGTGTCTTCATCACTGCTTGGGTCTACATGATGTACTGCGCCGCCTTA CGCTACGAGGACCCCTTCACCTCGGCCATTTACGCCAAGCGCGAACGAGAAAGGGCTGCCATGGGCGGTGTCGCC AAGAAGCACATGTGA |
| Transcript | >Ophcf2|01234 ATGGCGCCTCTTATCGACTTTGACAAGCAGAGCTTGCTGGTCTCCCTCTGCTCCATCACCTTCAACCCGCTGTTC TGGAACATCGTCGCCCGCCAAGAATACCACAACAAGCTGCTCACCAAGCTCTTCGGCGGCCAGTCCCGCCGCGCG TGCTACGCCCTCGCCTTGACCATCTTCTCCCTCGGCCTGGTACGCGACTGGCTCTACAAGCGGGCAATTCAAGAG CAGCCCTCTCACGCGCTGCTGCTAACGCCGGCGTCGCGCCTCGCCGGCATCTCCCTTGTGCTCGCCGGCAACGTC CTCGTCTTGTCGTCTACGTGGGCGCTCGGCATCACGGGCACCTTCTTGGGCGACTACTTCGGTATCCTGATGGAC GACATGGTGACGGGCTTTCCCTTCAACGTCTGCGGCGCTCCCATGTACTGGGGTTCTACCATGAGTTTCCTCGGC ACTGCACTGCTGTTGGGGAAGCCCGCCGGTGTCTTCATCACTGCTTGGGTCTACATGATGTACTGCGCCGCCTTA CGCTACGAGGACCCCTTCACCTCGGCCATTTACGCCAAGCGCGAACGAGAAAGGGCTGCCATGGGCGGTGTCGCC AAGAAGCACATGTGA |
| Gene | >Ophcf2|01234 ATGGCGCCTCTTATCGACTTTGACAAGCAGAGCTTGCTGGGTGGGCGTGCCTTGGATCGATCCATTCCCCGATTC CCCAATCTGATAGTCAACTCGTCTTCAGTCTCCCTCTGCTCCATCACCTTCAACCCGCTGTTCTGGAAGTAAGTA AGGCTTTCAAGCCTCGACCTTCACAGGCAGCTGACCGACCCTCACCCACCCTCACAGCATCGTCGCCCGCCAAGG TCCGTCCCGACCCCGACTCACAAGATAGCCACAGAAGCGCAACAGCTGGCTGAAACGTCCAGCAACAGAATACCA CAACAAGCTGCTCACCAAGCTCTTCGGCGGCCAGTCCCGCCGCGCGTGCTACGCCCTCGCCTTGACCATCTTCTC CCTCGGCCTGGTACGCGACTGGCTCTACAAGCGGGCAATTCAAGAGCAGCCCTCTCACGCGCTGCTGCTAACGCC GGCGTCGCGCCTCGCCGGCATCTCCCTTGTGCTCGCCGGCAACGTCCTCGTCTTGTCGTCTACGTGGGCGCTCGG CATCACGGGCACCTTCTTGGGCGACTACTTCGGTATCCTGATGGACGACATGGTGACGGGCTTTCCCTTCAACGT CTGCGGCGCTCCCATGTACTGGGGTTCTACCATGAGTTTCCTCGGCACTGCACTGCTGTTGGGGAAGCCCGCCGG TGTCTTCATCACTGCTTGGGTCTACATGATGTACTGCGCCGCCTTACGCTACGAGGACCCCTTCACCTCGGCCAT TTACGCCAAGCGCGAACGAGAAAGGGCTGCCATGGGCGGTGTCGCCAAGAAGCACATGTGA |