© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01167 |
| Gene name | |
| Location | scaffold_01:4246743..4247984 |
| Strand | - |
| Gene length (bp) | 1241 |
| Transcript length (bp) | 1134 |
| Coding sequence length (bp) | 1134 |
| Protein length (aa) | 378 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06775 | Seipin | Putative adipose-regulatory protein (Seipin) | 9.4E-56 | 32 | 246 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019915 | lipid storage | Yes |
| GO:0008150 | biological_process | No |
| GO:0051235 | maintenance of location | No |
| GO:0051179 | localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0836 | 0.1825 | 0.0798 | 0.0803 | 0.1176 | 0.024 | 0.8174 | 0.322 | 0.6339 | 0.0172 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 239 | 261 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5388 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01167 MNKIKQTVEAATSKPMQRVAVNTALLVSGASTLFCVAALVTGIFFHNYVPHQLVRVPAHLQYGSGPNPYAVVSLT RPPMIKTQQEYDVSVVLSIPRSPANVERGNFMVSLQLFEAEASAKLEADARVFAHAHDHFGTNKVLFASRRPALV PYDDPFVSISKRLVLVLYHMLFPATQSYNMRVDLAERLAFVRSSDVPASAYVEIEAGQDIQIYRAALVMTAQMRG LRWLMVHYRIFTYITATVVFWACEVLFMSLGWIVWASATGSRGAGKDTGRRPITKGEIKNERDQDESSEHAYAFP TVGRQRPLRYEPEVKMEDDDSRGRSLAEVPVAGVEGDDEDEHKADDDRRRYDSGLGTSYSERGSSSVRRRASRSE TE* |
| Coding | >Ophcf2|01167 ATGAACAAAATCAAGCAGACTGTGGAGGCGGCGACGTCCAAGCCCATGCAAAGGGTCGCCGTCAACACAGCGCTC CTTGTGTCAGGGGCATCTACGCTCTTCTGCGTCGCTGCCCTCGTGACAGGCATCTTCTTTCACAACTACGTGCCG CACCAGCTCGTGAGGGTGCCTGCGCATCTTCAGTATGGGTCGGGCCCTAACCCTTACGCCGTTGTGTCCCTCACG CGCCCGCCGATGATTAAGACTCAGCAGGAGTACGACGTGTCGGTAGTTCTCTCCATTCCGCGATCCCCGGCCAAC GTCGAGCGCGGGAACTTCATGGTCTCCCTGCAACTGTTCGAAGCCGAGGCCAGCGCGAAGCTCGAAGCCGACGCC CGTGTCTTTGCGCACGCACACGATCACTTTGGTACCAACAAGGTCCTCTTCGCGTCACGGCGTCCCGCTCTCGTA CCCTACGATGACCCCTTTGTCTCCATATCAAAGCGCTTGGTTCTCGTGCTGTATCACATGCTCTTTCCCGCCACG CAGTCGTACAACATGAGGGTCGACCTGGCTGAGCGGCTCGCCTTTGTCAGGAGCTCTGACGTGCCTGCTTCGGCC TACGTCGAGATAGAAGCCGGGCAAGACATACAGATTTACCGAGCGGCTCTGGTCATGACAGCGCAGATGCGGGGT CTACGCTGGCTCATGGTTCACTATCGCATCTTTACCTACATCACGGCCACGGTGGTCTTCTGGGCGTGCGAGGTC TTATTCATGAGTCTTGGTTGGATCGTTTGGGCTTCAGCCACGGGCTCCAGGGGCGCTGGGAAAGACACGGGTCGC CGTCCCATTACTAAAGGGGAGATTAAGAACGAGCGAGATCAGGACGAGTCGTCGGAACACGCATATGCGTTCCCC ACTGTCGGAAGACAGCGGCCACTGAGATATGAGCCGGAGGTCAAGATGGAGGACGATGATAGCCGCGGTCGGTCC CTGGCTGAAGTACCCGTCGCCGGGGTCGAAGGGGACGATGAGGACGAGCACAAGGCCGACGACGACAGGCGCAGA TATGACTCTGGTCTGGGCACGAGCTATAGTGAAAGGGGCAGCAGCAGCGTTCGCAGGAGGGCGTCTCGGAGCGAG ACGGAGTAA |
| Transcript | >Ophcf2|01167 ATGAACAAAATCAAGCAGACTGTGGAGGCGGCGACGTCCAAGCCCATGCAAAGGGTCGCCGTCAACACAGCGCTC CTTGTGTCAGGGGCATCTACGCTCTTCTGCGTCGCTGCCCTCGTGACAGGCATCTTCTTTCACAACTACGTGCCG CACCAGCTCGTGAGGGTGCCTGCGCATCTTCAGTATGGGTCGGGCCCTAACCCTTACGCCGTTGTGTCCCTCACG CGCCCGCCGATGATTAAGACTCAGCAGGAGTACGACGTGTCGGTAGTTCTCTCCATTCCGCGATCCCCGGCCAAC GTCGAGCGCGGGAACTTCATGGTCTCCCTGCAACTGTTCGAAGCCGAGGCCAGCGCGAAGCTCGAAGCCGACGCC CGTGTCTTTGCGCACGCACACGATCACTTTGGTACCAACAAGGTCCTCTTCGCGTCACGGCGTCCCGCTCTCGTA CCCTACGATGACCCCTTTGTCTCCATATCAAAGCGCTTGGTTCTCGTGCTGTATCACATGCTCTTTCCCGCCACG CAGTCGTACAACATGAGGGTCGACCTGGCTGAGCGGCTCGCCTTTGTCAGGAGCTCTGACGTGCCTGCTTCGGCC TACGTCGAGATAGAAGCCGGGCAAGACATACAGATTTACCGAGCGGCTCTGGTCATGACAGCGCAGATGCGGGGT CTACGCTGGCTCATGGTTCACTATCGCATCTTTACCTACATCACGGCCACGGTGGTCTTCTGGGCGTGCGAGGTC TTATTCATGAGTCTTGGTTGGATCGTTTGGGCTTCAGCCACGGGCTCCAGGGGCGCTGGGAAAGACACGGGTCGC CGTCCCATTACTAAAGGGGAGATTAAGAACGAGCGAGATCAGGACGAGTCGTCGGAACACGCATATGCGTTCCCC ACTGTCGGAAGACAGCGGCCACTGAGATATGAGCCGGAGGTCAAGATGGAGGACGATGATAGCCGCGGTCGGTCC CTGGCTGAAGTACCCGTCGCCGGGGTCGAAGGGGACGATGAGGACGAGCACAAGGCCGACGACGACAGGCGCAGA TATGACTCTGGTCTGGGCACGAGCTATAGTGAAAGGGGCAGCAGCAGCGTTCGCAGGAGGGCGTCTCGGAGCGAG ACGGAGTAA |
| Gene | >Ophcf2|01167 ATGGTAAGCAGCCTGCCTACGGAATCAGTTCTCTAAACTGACCGTCTCAGAACAAAATCAAGCAGACTGTGGAGG CGGCGACGTCCAAGCCCATGCAAAGGGTCGCCGTCAACACAGCGCTCCTTGTGTCAGGGGCATCTACGCTCTTCT GCGTCGCTGCCCTCGTGACAGGCATCTTCTTTCACAACTACGTGCCGCACCAGCTCGTGAGGGTGCCTGCGCATC TTCAGTATGGGTGAGTCTAATCTCTTCCCCACCGCGTGTGCTATCAAGCTAATGCGCCACGACTTCTCAGGTCGG GCCCTAACCCTTACGCCGTTGTGTCCCTCACGCGCCCGCCGATGATTAAGACTCAGCAGGAGTACGACGTGTCGG TAGTTCTCTCCATTCCGCGATCCCCGGCCAACGTCGAGCGCGGGAACTTCATGGTCTCCCTGCAACTGTTCGAAG CCGAGGCCAGCGCGAAGCTCGAAGCCGACGCCCGTGTCTTTGCGCACGCACACGATCACTTTGGTACCAACAAGG TCCTCTTCGCGTCACGGCGTCCCGCTCTCGTACCCTACGATGACCCCTTTGTCTCCATATCAAAGCGCTTGGTTC TCGTGCTGTATCACATGCTCTTTCCCGCCACGCAGTCGTACAACATGAGGGTCGACCTGGCTGAGCGGCTCGCCT TTGTCAGGAGCTCTGACGTGCCTGCTTCGGCCTACGTCGAGATAGAAGCCGGGCAAGACATACAGATTTACCGAG CGGCTCTGGTCATGACAGCGCAGATGCGGGGTCTACGCTGGCTCATGGTTCACTATCGCATCTTTACCTACATCA CGGCCACGGTGGTCTTCTGGGCGTGCGAGGTCTTATTCATGAGTCTTGGTTGGATCGTTTGGGCTTCAGCCACGG GCTCCAGGGGCGCTGGGAAAGACACGGGTCGCCGTCCCATTACTAAAGGGGAGATTAAGAACGAGCGAGATCAGG ACGAGTCGTCGGAACACGCATATGCGTTCCCCACTGTCGGAAGACAGCGGCCACTGAGATATGAGCCGGAGGTCA AGATGGAGGACGATGATAGCCGCGGTCGGTCCCTGGCTGAAGTACCCGTCGCCGGGGTCGAAGGGGACGATGAGG ACGAGCACAAGGCCGACGACGACAGGCGCAGATATGACTCTGGTCTGGGCACGAGCTATAGTGAAAGGGGCAGCA GCAGCGTTCGCAGGAGGGCGTCTCGGAGCGAGACGGAGTAA |