© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01147 |
| Gene name | |
| Location | scaffold_01:4189319..4191098 |
| Strand | - |
| Gene length (bp) | 1779 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.9E-36 | 70 | 438 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 66 | 88 | 22 |
| 2 | 103 | 125 | 22 |
| 3 | 134 | 152 | 18 |
| 4 | 157 | 179 | 22 |
| 5 | 192 | 214 | 22 |
| 6 | 224 | 246 | 22 |
| 7 | 298 | 320 | 22 |
| 8 | 330 | 352 | 22 |
| 9 | 359 | 381 | 22 |
| 10 | 386 | 408 | 22 |
| 11 | 421 | 443 | 22 |
| 12 | 453 | 475 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01147 MSDPVKAEADAAQDVRPVGSASSSEAALGPRSSVDAAWRFLDEHRHAQGVESVDLRMLRRTIDWRIVPLMFCCYT MQFLDKVILNYAAVMGISKDLDLRGNDFSNVATFLFVGLLCFEVPNTYFLQKVPPAKWLGLNVTLWGIATACGAA AHDYRSLLVSRVFLGIFEATIGPSLMLISSMWYTKSEQAPRFSFWYLGLGLGQIVGGAVSYGFQHVGSGAALAGW RLMFLILGLVTVCFGICTFVWLPDTPMQASWLSTTEKVALLKHVSVNQTGIRSRHFRFREVGEALLDPQIWLLVL AVVLLSVSSGVVTTYSATLIKNLGYTPKRAALMNMPSGVVSIFFILLVGFGIRRQSHRWAWIIVCIIPAIIGGAL MSFLNPRTHRAGVLAGIYLVNAVVAPLTVFYSLTVANCAGGTKRAFAAALVSGSFSLGNIIGPQTFQARDAPDFR PAKLAVMGTQAGCALVTILLFLYYVQANRRRNDRSRQQEEAFMSPEVWATMTDKENRQFRYSY* |
| Coding | >Ophcf2|01147 ATGTCCGACCCCGTCAAAGCTGAAGCGGACGCTGCTCAAGACGTCCGACCCGTCGGGTCTGCCTCGTCCAGTGAG GCTGCTCTGGGACCGCGGTCCAGTGTTGATGCTGCTTGGCGATTCCTCGACGAGCATCGCCATGCCCAGGGTGTG GAATCGGTGGATCTGCGGATGCTGAGGAGGACTATCGATTGGCGCATCGTGCCGCTCATGTTTTGCTGCTATACC ATGCAGTTTCTCGACAAGGTTATTCTCAACTATGCCGCTGTCATGGGCATCTCCAAGGATCTGGATCTGCGCGGC AACGACTTTTCCAACGTGGCTACCTTTTTGTTTGTTGGTCTGTTGTGTTTCGAGGTTCCTAATACCTACTTCCTA CAAAAAGTCCCCCCCGCAAAGTGGCTCGGCCTCAACGTCACTCTCTGGGGCATCGCCACCGCCTGCGGCGCCGCA GCCCACGATTACCGAAGTCTCCTCGTCTCCCGCGTCTTCCTCGGCATCTTCGAAGCCACCATTGGCCCCTCGCTC ATGCTCATCAGCAGCATGTGGTATACAAAGTCGGAGCAGGCTCCGCGCTTCTCCTTCTGGTACCTCGGTCTCGGC CTCGGCCAGATAGTTGGCGGCGCCGTCTCCTACGGCTTTCAGCACGTCGGCTCCGGAGCGGCCCTCGCCGGCTGG AGACTCATGTTTCTCATCCTCGGTCTCGTCACCGTTTGCTTCGGCATCTGTACATTTGTCTGGTTGCCGGATACG CCTATGCAGGCCTCGTGGTTGTCGACGACGGAAAAGGTGGCTCTGCTCAAGCACGTCAGCGTCAACCAGACGGGC ATCCGCTCTCGTCATTTCCGCTTCCGAGAGGTCGGCGAGGCCCTACTCGATCCTCAGATCTGGCTGCTCGTCTTG GCCGTCGTGCTGCTGTCCGTCTCCAGCGGTGTCGTCACCACTTACTCGGCCACTCTGATAAAGAATCTCGGATAC ACCCCGAAACGCGCTGCCCTCATGAATATGCCATCGGGCGTCGTCAGCATCTTCTTCATTCTCCTCGTCGGCTTC GGCATCCGCAGGCAGTCGCACCGATGGGCTTGGATCATTGTTTGCATCATCCCTGCCATCATTGGCGGCGCTCTC ATGTCCTTCTTGAATCCTCGAACCCATCGGGCCGGCGTCCTGGCCGGCATCTACCTCGTCAACGCCGTCGTCGCC CCCCTGACCGTCTTCTACAGCTTGACCGTGGCCAACTGCGCCGGAGGCACCAAACGCGCCTTCGCCGCAGCCCTC GTCAGCGGCTCCTTTTCCCTCGGCAACATCATCGGCCCTCAGACCTTTCAGGCCCGCGACGCCCCCGACTTTCGC CCGGCTAAGCTGGCCGTCATGGGCACTCAGGCCGGATGCGCCCTCGTCACCATACTTCTCTTCCTCTACTACGTC CAGGCCAACCGTCGGCGCAACGATCGCAGCCGTCAGCAGGAGGAGGCTTTTATGTCGCCCGAGGTCTGGGCCACC ATGACGGACAAGGAGAACAGGCAGTTCCGGTACAGCTATTGA |
| Transcript | >Ophcf2|01147 ATGTCCGACCCCGTCAAAGCTGAAGCGGACGCTGCTCAAGACGTCCGACCCGTCGGGTCTGCCTCGTCCAGTGAG GCTGCTCTGGGACCGCGGTCCAGTGTTGATGCTGCTTGGCGATTCCTCGACGAGCATCGCCATGCCCAGGGTGTG GAATCGGTGGATCTGCGGATGCTGAGGAGGACTATCGATTGGCGCATCGTGCCGCTCATGTTTTGCTGCTATACC ATGCAGTTTCTCGACAAGGTTATTCTCAACTATGCCGCTGTCATGGGCATCTCCAAGGATCTGGATCTGCGCGGC AACGACTTTTCCAACGTGGCTACCTTTTTGTTTGTTGGTCTGTTGTGTTTCGAGGTTCCTAATACCTACTTCCTA CAAAAAGTCCCCCCCGCAAAGTGGCTCGGCCTCAACGTCACTCTCTGGGGCATCGCCACCGCCTGCGGCGCCGCA GCCCACGATTACCGAAGTCTCCTCGTCTCCCGCGTCTTCCTCGGCATCTTCGAAGCCACCATTGGCCCCTCGCTC ATGCTCATCAGCAGCATGTGGTATACAAAGTCGGAGCAGGCTCCGCGCTTCTCCTTCTGGTACCTCGGTCTCGGC CTCGGCCAGATAGTTGGCGGCGCCGTCTCCTACGGCTTTCAGCACGTCGGCTCCGGAGCGGCCCTCGCCGGCTGG AGACTCATGTTTCTCATCCTCGGTCTCGTCACCGTTTGCTTCGGCATCTGTACATTTGTCTGGTTGCCGGATACG CCTATGCAGGCCTCGTGGTTGTCGACGACGGAAAAGGTGGCTCTGCTCAAGCACGTCAGCGTCAACCAGACGGGC ATCCGCTCTCGTCATTTCCGCTTCCGAGAGGTCGGCGAGGCCCTACTCGATCCTCAGATCTGGCTGCTCGTCTTG GCCGTCGTGCTGCTGTCCGTCTCCAGCGGTGTCGTCACCACTTACTCGGCCACTCTGATAAAGAATCTCGGATAC ACCCCGAAACGCGCTGCCCTCATGAATATGCCATCGGGCGTCGTCAGCATCTTCTTCATTCTCCTCGTCGGCTTC GGCATCCGCAGGCAGTCGCACCGATGGGCTTGGATCATTGTTTGCATCATCCCTGCCATCATTGGCGGCGCTCTC ATGTCCTTCTTGAATCCTCGAACCCATCGGGCCGGCGTCCTGGCCGGCATCTACCTCGTCAACGCCGTCGTCGCC CCCCTGACCGTCTTCTACAGCTTGACCGTGGCCAACTGCGCCGGAGGCACCAAACGCGCCTTCGCCGCAGCCCTC GTCAGCGGCTCCTTTTCCCTCGGCAACATCATCGGCCCTCAGACCTTTCAGGCCCGCGACGCCCCCGACTTTCGC CCGGCTAAGCTGGCCGTCATGGGCACTCAGGCCGGATGCGCCCTCGTCACCATACTTCTCTTCCTCTACTACGTC CAGGCCAACCGTCGGCGCAACGATCGCAGCCGTCAGCAGGAGGAGGCTTTTATGTCGCCCGAGGTCTGGGCCACC ATGACGGACAAGGAGAACAGGCAGTTCCGGTACAGCTATTGA |
| Gene | >Ophcf2|01147 ATGTCCGACCCCGTCAAAGCTGAAGCGGACGCTGCTCAAGACGTCCGACCCGTCGGGTCTGCCTCGTCCAGTGAG GCTGCTCTGGGACCGCGGTCCAGTGTTGATGCTGCTTGGCGATTCCTCGACGAGCATCGCCATGCCCAGGGTGTG GAATCGGTGGATCTGCGGATGCTGAGGAGGACTATCGATTGGCGCATCGTGCCGCTCATGTTTTGCTGCTATACC ATGCAGTTTCTCGACAAGGTTATTCTCAACTATGCCGCTGTCATGGGCATCTCCAAGGATCTGGATCTGCGCGGC AACGACTTTTCCAACGTGGCTACCTTTTTGTTTGTTGGTCTGTTGTGTTTCGAGGTTCCTAATAGTGAGTATCCT CCATCCAGATCTCCCCCCCAAACATTTAAACCCCATCTTCATCAACTGCCCCCTTATAACCCCCTTTGTATCTTC TCTGACATTGTTTCATTGACATTATCCATCTCAGCCTACTTCCTACAAAAAGTCCCCCCCGCAAAGTGGCTCGGC CTCAACGTCACTCTCTGGGGCATCGCCACCGCCTGCGGCGCCGCAGCCCACGATTACCGAAGTCTCCTCGTCTCC CGCGTCTTCCTCGGCATCTTCGAAGCCACCATTGGCCCCTCGCTCATGCTCATCAGCAGCATGTGGTATACAAAG TCGGAGCAGGCTCCGCGCTTCTCCTTCTGGTACCTCGGTCTCGGCCTCGGCCAGATAGTTGGCGGCGCCGTCTCC TACGGCTTTCAGCACGTCGGCTCCGGAGCGGCCCTCGCCGGCTGGAGACTCATGTTTCTCATCCTCGGTCTCGTC ACCGTTTGCTTCGGCATCTGTACATTTGTCTGGTTGCCGGATACGCCTATGCAGGCCTCGTGGTTGTCGACGACG GAAAAGGTGGCTCTGCTCAAGCACGTCAGCGTCAACCAGACGGGCATCCGCTCTCGTCATTTCCGCTTCCGAGAG GTCGGCGAGGCCCTACTCGATCCTCAGATCTGGCTGCTCGTCTTGGCCGTCGTGCTGCTGTCCGTCTCCAGCGGT GTCGTCACCACTTACTCGGCCACTCTGATAAAGAATCTCGGATACACCCCGAAACGCGCTGCCCTCATGAATATG CCATCGGGCGTCGTCAGCATCTTCTTCATTCTCCTCGTCGGCTTCGGCATCCGCAGGCAGTCGCACCGATGGGCT TGGATCATTGTTTGCATCATCCCTGCGTATGTTTTCCCCTCCCATTTTCTCGATTCACCCCTGACTGACTCGATA TTCTAAGCATCATTGGCGGCGCTCTCATGTCCTTCTTGAATCCTCGAACCCATCGGGCCGGCGTCCTGGCCGGCA TCTACCTCGTCAACGCCGTCGTCGCCCCCCTGACCGTCTTCTACAGCGTACATGCCCCTATCTCTTCCCTCTTCA CCTCGAGCCCTTTGTCTCTAACGCCTTGACCAGTTGACCGTGGCCAACTGCGCCGGAGGCACCAAACGCGCCTTC GCCGCAGCCCTCGTCAGCGGCTCCTTTTCCCTCGGCAACATCATCGGCCCTCAGACCTTTCAGGCCCGCGACGCC CCCGACTTTCGCCCGGCTAAGCTGGCCGTCATGGGCACTCAGGCCGGATGCGCCCTCGTCACCATACTTCTCTTC CTCTACTACGTCCAGGCCAACCGTCGGCGCAACGATCGCAGCCGTCAGCAGGAGGAGGCTTTTATGTCGCCCGAG GTCTGGGCCACCATGACGGACAAGGAGAACAGGCAGTTCCGGTACAGCTATTGA |