© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01146 |
| Gene name | |
| Location | scaffold_01:4187034..4188254 |
| Strand | - |
| Gene length (bp) | 1220 |
| Transcript length (bp) | 1137 |
| Coding sequence length (bp) | 1137 |
| Protein length (aa) | 379 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11991 | Trp_DMAT | Tryptophan dimethylallyltransferase | 2.4E-57 | 1 | 321 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | Yes |
| GO:0009820 | alkaloid metabolic process | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01146 MGPRPSIDGHLSCPSVYGDGIPLEYSWKWNTASTPPDVRYTLESIGPNSRTSLDPLNHDANIDFLEKVKRVEPST DLSINQHFLNTLFDPDRTKYAFMSRSLHLTMAATIEFLRSGLFTKTYFQPPSLDVDNPSIAPMPVWEESLAKLQP KSPARQAMHDFLQTNPEGKLLRPITLALDNNAAASTRLKLYLTTPHTSFASVREILTLGGAKPTPDDMLEQVRSL ISAVACLDGPLSDDEELPMTSQEHYTNGDVLRTAPGLTSGFVYYFDIGSEETTTPDVKLYILTRPYGKDDISIGR GLVDWMNRHGRGQYGKQYLDMLEAISPHRNPGKEKGQHIYVSCIINKDHLNITSYFVPRMPVRTGRKRGQGCSGH LES* |
| Coding | >Ophcf2|01146 ATGGGTCCCCGGCCGTCTATAGATGGCCATCTATCATGTCCGTCCGTCTATGGAGACGGCATCCCTCTCGAATAC AGCTGGAAATGGAACACAGCCTCAACACCGCCAGACGTGCGCTACACGCTCGAAAGCATTGGCCCCAACAGCAGA ACGTCCCTCGACCCTCTAAACCACGACGCAAACATCGACTTCCTCGAAAAGGTCAAGCGTGTGGAACCTTCCACC GACCTCTCCATCAACCAGCACTTCCTAAACACCCTCTTTGACCCAGACCGCACAAAGTACGCCTTCATGTCTCGC TCCCTCCACCTGACAATGGCCGCCACCATCGAGTTCCTTCGCTCAGGCCTCTTCACCAAGACGTACTTCCAGCCC CCCTCTCTCGACGTCGACAACCCCAGTATCGCCCCCATGCCCGTCTGGGAAGAGAGCCTGGCGAAGCTACAGCCC AAAAGTCCAGCACGCCAGGCCATGCACGACTTTCTACAGACAAACCCCGAGGGCAAACTGTTACGTCCCATCACG CTGGCCCTCGACAACAACGCCGCCGCCTCAACACGGCTAAAGCTATACCTGACAACTCCCCACACTTCCTTCGCC TCTGTCCGTGAGATCCTCACTCTGGGCGGCGCCAAACCCACCCCCGACGACATGCTGGAACAGGTCCGCTCCCTG ATCTCCGCCGTTGCCTGTCTCGACGGTCCCCTATCCGACGACGAGGAGCTGCCCATGACGTCGCAGGAGCATTAT ACGAACGGAGACGTGCTGAGGACGGCCCCCGGCTTGACCTCCGGATTCGTCTACTACTTCGACATCGGCTCCGAG GAGACCACCACGCCAGATGTCAAGCTCTACATCTTGACGAGACCTTACGGAAAAGACGACATTAGCATCGGCCGC GGCCTCGTCGACTGGATGAATCGTCATGGTCGGGGTCAGTACGGGAAGCAGTACCTCGACATGCTCGAAGCCATC TCTCCCCATCGTAATCCGGGCAAGGAAAAGGGCCAGCACATCTACGTCAGCTGCATTATCAACAAGGACCACCTC AACATCACCTCGTATTTTGTTCCGCGGATGCCGGTCCGCACGGGGCGGAAGAGGGGGCAAGGATGCTCAGGGCAT CTCGAGTCCTGA |
| Transcript | >Ophcf2|01146 ATGGGTCCCCGGCCGTCTATAGATGGCCATCTATCATGTCCGTCCGTCTATGGAGACGGCATCCCTCTCGAATAC AGCTGGAAATGGAACACAGCCTCAACACCGCCAGACGTGCGCTACACGCTCGAAAGCATTGGCCCCAACAGCAGA ACGTCCCTCGACCCTCTAAACCACGACGCAAACATCGACTTCCTCGAAAAGGTCAAGCGTGTGGAACCTTCCACC GACCTCTCCATCAACCAGCACTTCCTAAACACCCTCTTTGACCCAGACCGCACAAAGTACGCCTTCATGTCTCGC TCCCTCCACCTGACAATGGCCGCCACCATCGAGTTCCTTCGCTCAGGCCTCTTCACCAAGACGTACTTCCAGCCC CCCTCTCTCGACGTCGACAACCCCAGTATCGCCCCCATGCCCGTCTGGGAAGAGAGCCTGGCGAAGCTACAGCCC AAAAGTCCAGCACGCCAGGCCATGCACGACTTTCTACAGACAAACCCCGAGGGCAAACTGTTACGTCCCATCACG CTGGCCCTCGACAACAACGCCGCCGCCTCAACACGGCTAAAGCTATACCTGACAACTCCCCACACTTCCTTCGCC TCTGTCCGTGAGATCCTCACTCTGGGCGGCGCCAAACCCACCCCCGACGACATGCTGGAACAGGTCCGCTCCCTG ATCTCCGCCGTTGCCTGTCTCGACGGTCCCCTATCCGACGACGAGGAGCTGCCCATGACGTCGCAGGAGCATTAT ACGAACGGAGACGTGCTGAGGACGGCCCCCGGCTTGACCTCCGGATTCGTCTACTACTTCGACATCGGCTCCGAG GAGACCACCACGCCAGATGTCAAGCTCTACATCTTGACGAGACCTTACGGAAAAGACGACATTAGCATCGGCCGC GGCCTCGTCGACTGGATGAATCGTCATGGTCGGGGTCAGTACGGGAAGCAGTACCTCGACATGCTCGAAGCCATC TCTCCCCATCGTAATCCGGGCAAGGAAAAGGGCCAGCACATCTACGTCAGCTGCATTATCAACAAGGACCACCTC AACATCACCTCGTATTTTGTTCCGCGGATGCCGGTCCGCACGGGGCGGAAGAGGGGGCAAGGATGCTCAGGGCAT CTCGAGTCCTGA |
| Gene | >Ophcf2|01146 ATGGGTCCCCGGCCGTCTATAGATGGCCATCTATCATGTCCGTCCGTCTATGGAGACGGCATCCCTCTCGAATAC AGCTGGAAATGGAACACAGCCTCAACACCGCCAGACGTGCGCTACACGCTCGAAAGCATTGGCCCCAACAGCAGA ACGTCCCTCGACCCTCTAAACCACGACGCAAACATCGACTTCCTCGAAAAGGTCAAGCGTGTGGAACCTTCCACC GACCTCTCCATCAACCAGCACTTCCTAAACACCCTCTTTGACCCAGACCGCACAAAGTACGCCTTCATGTCTCGC TCCCTCCACCTGACAATGGCCGCCACCATCGAGTTCCTTCGCTCAGGCCTCTTCACCAAGACGTACTTCCAGCCC CCCTCTCTCGACGTCGACAACCCCAGTATCGCCCCCATGCCCGTCTGGGAAGAGAGCCTGGCGAAGCTACAGCCC AAAAGTCCAGCACGCCAGGCCATGCACGACTTTCTACAGACAAACCCCGAGGGCAAACTGTTACGTCCCATGTAT GTAAGAGAGAAAGAAGACTAGACTCGTTGACTCGGGCTCACCAAGGTTTGCTAACCCCCCCTTTCCCCCCCTCTC ACAGCACGCTGGCCCTCGACAACAACGCCGCCGCCTCAACACGGCTAAAGCTATACCTGACAACTCCCCACACTT CCTTCGCCTCTGTCCGTGAGATCCTCACTCTGGGCGGCGCCAAACCCACCCCCGACGACATGCTGGAACAGGTCC GCTCCCTGATCTCCGCCGTTGCCTGTCTCGACGGTCCCCTATCCGACGACGAGGAGCTGCCCATGACGTCGCAGG AGCATTATACGAACGGAGACGTGCTGAGGACGGCCCCCGGCTTGACCTCCGGATTCGTCTACTACTTCGACATCG GCTCCGAGGAGACCACCACGCCAGATGTCAAGCTCTACATCTTGACGAGACCTTACGGAAAAGACGACATTAGCA TCGGCCGCGGCCTCGTCGACTGGATGAATCGTCATGGTCGGGGTCAGTACGGGAAGCAGTACCTCGACATGCTCG AAGCCATCTCTCCCCATCGTAATCCGGGCAAGGAAAAGGGCCAGCACATCTACGTCAGCTGCATTATCAACAAGG ACCACCTCAACATCACCTCGTATTTTGTTCCGCGGATGCCGGTCCGCACGGGGCGGAAGAGGGGGCAAGGATGCT CAGGGCATCTCGAGTCCTGA |