© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01144 |
| Gene name | |
| Location | scaffold_01:4179902..4182197 |
| Strand | + |
| Gene length (bp) | 2295 |
| Transcript length (bp) | 2175 |
| Coding sequence length (bp) | 2175 |
| Protein length (aa) | 725 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00009 | GTP_EFTU | Elongation factor Tu GTP binding domain | 1.7E-41 | 290 | 509 |
| PF03143 | GTP_EFTU_D3 | Elongation factor Tu C-terminal domain | 1.2E-21 | 610 | 718 |
| PF03144 | GTP_EFTU_D2 | Elongation factor Tu domain 2 | 2.5E-07 | 534 | 602 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0005488 | binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.6612 | 0.5595 | 0.0183 | 0.1033 | 0.1093 | 0.0106 | 0.1667 | 0.0883 | 0.0937 | 0.0006 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 3 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 123.42 | 64.43 | 182.4 |
| Alive | In ants, during behavior modification | 134.24 | 69.78 | 198.7 |
| Dead | In ants, recently dead | 173.10 | 85.30 | 260.9 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.741141 | no |
| Alive | Dead | 0.182832 | no |
| Dead | Fungus | 0.130390 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 1503 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01144 MTDLNSWEDDPAAQDEDLSRQAAQQLNVNAQNPASQAGFRPNVASFHPGAQSFQPGQAYGGNFMPQYQQQQFYPQ GYYPQYGQPQGFNQYSQAYGQGYGQAYGQTYGGGYPQYGHQTQQNPQQPSQPQPPAQPPAQPPAAVQHTPKQPVA DGHAPSSSAKPVVTKEGGAKGLSIGGDTAAPKPKAKVLSIGGATKEKEETKAETKTEPSDEPEAGQKAAAVKAIG KTGEKAGKAAAGASKTSGKTSPTPSSGRSSPVGSGEKKTQRDVDAVTKEQAADVDQETLKEIYGKEHVNIIFIGH VDAGKSTLGGSILWSTGMVDERTMEKYKKEAKDMGRESWYLSWVMDLTKEERSKGKTVEVGRGFFDTEKRRYSIL DAPGHKTYVPSMIGGASQADVGILVISARKGEYETGFERGGQTREHAMLAKTQGVNKLVVVINKMDDATVEWSHE RYQECITKLSQFLKATGYNLKTDVFFMPVAAQQSLNIKDRLPKGVAPWWEGPSLLEYLDDMKALERKVNAPFMMP INAKYRDMGTMVDGKIEAGVVKKGMNLTMMPRKQSVEAAAIYGEQEDEVPILQCGDQVRMRLKGIEEEDILPGFV LCSTKRLVHCVAEFEAQIRILELKSILTSGFNCVLHVHSAIEEVTFAALLHKLQKGTNRKSKMPPTHAKKGDSII ARMQVIGGAGSVCVERFEDYPQMGRFTLRDQGQTIAIGKITKLITDDGN* |
| Coding | >Ophcf2|01144 ATGACAGATCTCAACTCGTGGGAGGACGACCCGGCCGCTCAGGACGAGGATCTATCGAGACAGGCGGCCCAACAA CTCAATGTGAACGCCCAAAACCCCGCGTCCCAGGCCGGCTTTCGGCCCAATGTCGCCTCCTTTCACCCTGGCGCT CAAAGCTTCCAGCCGGGCCAGGCATACGGAGGAAACTTCATGCCGCAGTATCAACAGCAGCAATTCTATCCGCAA GGCTACTATCCTCAATACGGTCAGCCCCAAGGCTTCAACCAGTACAGTCAGGCCTACGGCCAAGGATACGGCCAG GCATACGGTCAAACGTATGGTGGGGGTTACCCTCAATACGGCCATCAGACCCAGCAGAACCCCCAGCAACCGTCT CAACCACAGCCGCCCGCACAGCCGCCCGCACAGCCGCCCGCGGCTGTCCAGCACACTCCCAAGCAACCTGTAGCT GACGGCCACGCCCCGTCGTCGAGCGCCAAGCCGGTGGTGACGAAGGAAGGTGGTGCCAAAGGGCTAAGCATCGGC GGCGACACGGCTGCCCCAAAGCCGAAAGCCAAGGTCTTGTCGATCGGCGGCGCTACCAAGGAAAAGGAAGAGACC AAGGCCGAGACCAAGACGGAGCCGTCAGACGAGCCCGAGGCCGGGCAAAAGGCGGCAGCAGTCAAGGCCATCGGG AAAACCGGCGAGAAAGCGGGCAAGGCCGCAGCAGGCGCCTCCAAGACGTCGGGAAAGACATCGCCGACGCCGTCT TCCGGCCGTTCGAGTCCGGTGGGCTCGGGTGAGAAGAAGACGCAGCGCGATGTGGATGCCGTCACCAAGGAGCAG GCCGCCGACGTGGACCAGGAGACGCTCAAGGAAATTTACGGCAAGGAGCATGTCAACATCATCTTCATCGGTCAC GTCGACGCCGGCAAATCTACCTTGGGTGGCTCCATTCTCTGGAGCACCGGCATGGTGGACGAGAGGACCATGGAA AAGTACAAAAAAGAAGCCAAGGATATGGGCCGCGAGTCCTGGTATCTGTCTTGGGTCATGGACCTGACCAAGGAA GAGCGCTCCAAGGGAAAGACGGTCGAAGTTGGCAGAGGCTTTTTCGACACGGAGAAGCGCAGATACAGCATCCTC GACGCACCCGGGCATAAGACATATGTGCCGAGCATGATCGGAGGTGCCTCGCAGGCTGACGTTGGCATCCTCGTC ATCTCGGCGCGCAAGGGTGAATACGAGACGGGATTTGAACGAGGCGGGCAGACGCGGGAGCACGCGATGCTGGCC AAGACGCAGGGCGTCAACAAGCTGGTGGTGGTCATCAACAAGATGGACGACGCTACGGTCGAGTGGTCGCACGAG CGATACCAGGAGTGCATCACGAAGCTCTCGCAGTTCCTCAAGGCGACCGGGTACAACCTCAAGACGGACGTCTTC TTCATGCCCGTGGCGGCGCAGCAGTCGCTCAACATCAAGGATCGACTGCCCAAGGGAGTGGCGCCGTGGTGGGAA GGGCCGTCGCTGCTGGAGTACCTGGACGACATGAAGGCGCTGGAGCGCAAGGTGAACGCGCCCTTTATGATGCCC ATCAACGCCAAGTACCGAGACATGGGCACCATGGTGGACGGCAAGATCGAGGCGGGCGTGGTGAAGAAGGGCATG AACCTGACGATGATGCCGCGCAAGCAGTCGGTGGAGGCGGCGGCCATCTACGGCGAGCAGGAAGACGAGGTGCCG ATCCTGCAGTGCGGCGATCAGGTTCGTATGCGACTCAAGGGCATCGAGGAGGAAGACATCCTGCCCGGGTTCGTG CTATGCTCGACCAAGAGGCTGGTGCACTGCGTGGCCGAGTTTGAGGCGCAGATCCGGATTCTGGAGCTCAAGAGC ATCCTGACGTCGGGCTTCAACTGCGTGCTGCACGTGCATTCGGCCATTGAAGAGGTGACGTTTGCGGCTCTCCTG CACAAGCTGCAGAAGGGAACCAACCGGAAGAGCAAGATGCCGCCGACGCACGCCAAGAAGGGAGACAGCATCATT GCGCGGATGCAGGTGATTGGGGGTGCCGGCTCCGTGTGCGTGGAGAGGTTCGAAGACTACCCTCAGATGGGCCGC TTCACGTTGCGAGACCAGGGGCAGACGATCGCGATCGGAAAGATTACCAAGCTCATTACCGACGACGGAAACTGA |
| Transcript | >Ophcf2|01144 ATGACAGATCTCAACTCGTGGGAGGACGACCCGGCCGCTCAGGACGAGGATCTATCGAGACAGGCGGCCCAACAA CTCAATGTGAACGCCCAAAACCCCGCGTCCCAGGCCGGCTTTCGGCCCAATGTCGCCTCCTTTCACCCTGGCGCT CAAAGCTTCCAGCCGGGCCAGGCATACGGAGGAAACTTCATGCCGCAGTATCAACAGCAGCAATTCTATCCGCAA GGCTACTATCCTCAATACGGTCAGCCCCAAGGCTTCAACCAGTACAGTCAGGCCTACGGCCAAGGATACGGCCAG GCATACGGTCAAACGTATGGTGGGGGTTACCCTCAATACGGCCATCAGACCCAGCAGAACCCCCAGCAACCGTCT CAACCACAGCCGCCCGCACAGCCGCCCGCACAGCCGCCCGCGGCTGTCCAGCACACTCCCAAGCAACCTGTAGCT GACGGCCACGCCCCGTCGTCGAGCGCCAAGCCGGTGGTGACGAAGGAAGGTGGTGCCAAAGGGCTAAGCATCGGC GGCGACACGGCTGCCCCAAAGCCGAAAGCCAAGGTCTTGTCGATCGGCGGCGCTACCAAGGAAAAGGAAGAGACC AAGGCCGAGACCAAGACGGAGCCGTCAGACGAGCCCGAGGCCGGGCAAAAGGCGGCAGCAGTCAAGGCCATCGGG AAAACCGGCGAGAAAGCGGGCAAGGCCGCAGCAGGCGCCTCCAAGACGTCGGGAAAGACATCGCCGACGCCGTCT TCCGGCCGTTCGAGTCCGGTGGGCTCGGGTGAGAAGAAGACGCAGCGCGATGTGGATGCCGTCACCAAGGAGCAG GCCGCCGACGTGGACCAGGAGACGCTCAAGGAAATTTACGGCAAGGAGCATGTCAACATCATCTTCATCGGTCAC GTCGACGCCGGCAAATCTACCTTGGGTGGCTCCATTCTCTGGAGCACCGGCATGGTGGACGAGAGGACCATGGAA AAGTACAAAAAAGAAGCCAAGGATATGGGCCGCGAGTCCTGGTATCTGTCTTGGGTCATGGACCTGACCAAGGAA GAGCGCTCCAAGGGAAAGACGGTCGAAGTTGGCAGAGGCTTTTTCGACACGGAGAAGCGCAGATACAGCATCCTC GACGCACCCGGGCATAAGACATATGTGCCGAGCATGATCGGAGGTGCCTCGCAGGCTGACGTTGGCATCCTCGTC ATCTCGGCGCGCAAGGGTGAATACGAGACGGGATTTGAACGAGGCGGGCAGACGCGGGAGCACGCGATGCTGGCC AAGACGCAGGGCGTCAACAAGCTGGTGGTGGTCATCAACAAGATGGACGACGCTACGGTCGAGTGGTCGCACGAG CGATACCAGGAGTGCATCACGAAGCTCTCGCAGTTCCTCAAGGCGACCGGGTACAACCTCAAGACGGACGTCTTC TTCATGCCCGTGGCGGCGCAGCAGTCGCTCAACATCAAGGATCGACTGCCCAAGGGAGTGGCGCCGTGGTGGGAA GGGCCGTCGCTGCTGGAGTACCTGGACGACATGAAGGCGCTGGAGCGCAAGGTGAACGCGCCCTTTATGATGCCC ATCAACGCCAAGTACCGAGACATGGGCACCATGGTGGACGGCAAGATCGAGGCGGGCGTGGTGAAGAAGGGCATG AACCTGACGATGATGCCGCGCAAGCAGTCGGTGGAGGCGGCGGCCATCTACGGCGAGCAGGAAGACGAGGTGCCG ATCCTGCAGTGCGGCGATCAGGTTCGTATGCGACTCAAGGGCATCGAGGAGGAAGACATCCTGCCCGGGTTCGTG CTATGCTCGACCAAGAGGCTGGTGCACTGCGTGGCCGAGTTTGAGGCGCAGATCCGGATTCTGGAGCTCAAGAGC ATCCTGACGTCGGGCTTCAACTGCGTGCTGCACGTGCATTCGGCCATTGAAGAGGTGACGTTTGCGGCTCTCCTG CACAAGCTGCAGAAGGGAACCAACCGGAAGAGCAAGATGCCGCCGACGCACGCCAAGAAGGGAGACAGCATCATT GCGCGGATGCAGGTGATTGGGGGTGCCGGCTCCGTGTGCGTGGAGAGGTTCGAAGACTACCCTCAGATGGGCCGC TTCACGTTGCGAGACCAGGGGCAGACGATCGCGATCGGAAAGATTACCAAGCTCATTACCGACGACGGAAACTGA |
| Gene | >Ophcf2|01144 ATGACAGATCTCAACTCGTGGGAGGACGACCCGGCCGCTCAGGACGAGGATCTATCGAGACAGGCGGCCCAACAA CTCAATGTGAACGCCCAAAACCCCGCGTCCCAGGCCGGCTTTCGGCCCAATGTCGCCTCCTTTCACCCTGGCGCT CAAAGCTTCCAGCCGGGCCAGGCATACGGAGGAAACTTCATGCCGCAGTATCAACAGCAGCAATTCTATCCGCAA GGCTACTATCCTCAATACGGTCAGCCCCAAGGCTTCAACCAGTACAGTCAGGCCTACGGCCAAGGATACGGCCAG GCATACGGTCAAACGTATGGTATGCTGTTGTCTTCCTCCGCTTTCTCGTCGGTGGACGCTCACTGGCCCCTTCAG GTGGGGGTTACCCTCAATACGGCCATCAGACCCAGCAGAACCCCCAGCAACCGTCTCAACCACAGCCGCCCGCAC AGCCGCCCGCACAGCCGCCCGCGGCTGTCCAGCACACTCCCAAGCAACCTGTAGCTGACGGCCACGCCCCGTCGT CGAGCGCCAAGCCGGTGGTGACGAAGGAAGGTGGTGCCAAAGGGCTAAGCATCGGCGGCGACACGGCTGCCCCAA AGCCGAAAGCCAAGGTCTTGTCGATCGGCGGCGCTACCAAGGAAAAGGAAGAGACCAAGGCCGAGACCAAGACGG AGCCGTCAGACGAGCCCGAGGCCGGGCAAAAGGCGGCAGCAGTCAAGGCCATCGGGAAAACCGGCGAGAAAGCGG GCAAGGCCGCAGCAGGCGCCTCCAAGACGTCGGGAAAGACATCGCCGACGCCGTCTTCCGGCCGTTCGAGTCCGG TGGGCTCGGGTGAGAAGAAGACGCAGCGCGATGTGGATGCCGTCACCAAGGAGCAGGCCGCCGACGTGGACCAGG AGACGCTCAAGGAAATTTACGGCAAGGAGCATGTCAACATCATCTTCATCGGTCACGTCGACGCCGGCAAATCTA CCTTGGGTGGCTCCATTCTCTGGAGCACCGGCATGGTGGACGAGAGGACCATGGAAAAGTACAAAAAAGAAGCCA AGGATATGGGCCGCGAGTCCTGGTATCTGTCTTGGGTCATGGACCTGACCAAGGAAGAGCGCTCCAAGGGAAAGA CGGTCGAAGTTGGCAGAGGCTTTTTCGACACGGAGAAGCGCAGATACAGCATCCTCGACGCACCCGGGCATAAGA CATATGTGCCGAGCATGATCGGAGGTGCCTCGCAGGCTGACGTTGGCATCCTCGTCATCTCGGCGCGCAAGGGTG AATACGAGACGGGATTTGAACGAGGCGGGCAGACGCGGGAGCACGCGATGCTGGCCAAGACGCAGGGCGTCAACA AGCTGGTGGTGGTCATCAACAAGATGGACGACGCTACGGTCGAGTGGTCGCACGAGCGATACCAGGAGTGCATCA CGAAGCTCTCGCAGTTCCTCAAGGCGACCGGGTACAACCTCAAGACGGACGTCTTCTTCATGCCCGTGGCGGCGC AGCAGTCGCTCAACATCAAGGATCGACTGCCCAAGGGAGTGGCGCCGTGGTGGGAAGGGCCGTCGCTGCTGGAGT ACCTGGACGACATGAAGGCGCTGGAGCGCAAGGTGAACGCGCCCTTTATGATGCCCATCAACGCCAAGTACCGAG ACATGGGCACCATGGTGGACGGCAAGATCGAGGCGGGCGTGGTGAAGAAGGGCATGAACCTGACGATGATGCCGC GCAAGCAGTCGGTGGAGGCGGCGGCCATCTACGGCGAGCAGGAAGACGAGGTGCCGATCCTGCAGTGCGGCGATC AGGTTCGTATGCGACTCAAGGGCATCGAGGAGGAAGACATCCTGCCCGGGTTCGTGCTATGCTCGACCAAGAGGC TGGTGCACTGCGTGGCCGAGTTTGAGGCGCAGATCCGGATTCTGGAGCTCAAGAGCATCCTGACGTCGGGCTTCA ACTGCGTGCTGCACGTGCATTCGGCCATTGAAGAGGTGACGTTTGCGGCTCTCCTGCACAAGCTGCAGAAGGGAA CCAACCGGAAGAGCAAGATGCCGCCGACGCACGCCAAGAAGGGAGACAGCATCATTGCGCGGATGCAGGTGATTG GGGGTGCCGGCTCCGTGTGCGTGGAGAGGTTCGAAGACTACCCTCAGATGGGCCGCTTCACGTTGCGAGACCAGG TAGGTTGAGGCCGGAGCTCGGACCGGCATTGGGCGGCGATGCTGACATTTCTGGGGGAAACAGGGGCAGACGATC GCGATCGGAAAGATTACCAAGCTCATTACCGACGACGGAAACTGA |