© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01143 |
| Gene name | |
| Location | scaffold_01:4175316..4178847 |
| Strand | - |
| Gene length (bp) | 3531 |
| Transcript length (bp) | 2466 |
| Coding sequence length (bp) | 2466 |
| Protein length (aa) | 822 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05508 | Ran-binding | RanGTP-binding protein | 2.9E-109 | 1 | 350 |
| PF01375 | Enterotoxin_a | Heat-labile enterotoxin alpha chain | 2.7E-15 | 559 | 749 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005615 | extracellular space | Yes |
| GO:0090729 | toxin activity | Yes |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5639 | 0.3278 | 0.3668 | 0.1189 | 0.2662 | 0.0459 | 0.1823 | 0.2471 | 0.4187 | 0.2327 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 3 | (None) |
| Orthofinder run ID | 4 |
| Orthogroup | 1504 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01143 MDEFLAAVGVQAMKYAIRSGIALTSTYALGQCSRLLKTVDDKKLYGELSRLQKLLDGKMRVITPAIDLIEFKSGR GNVFLESAVPLTKSLYQDINSLGRRIASAVSSDESLADADRIAQQRGKLCEVISEIRGLLDRIDHEIPLLQLAIT ASGESLSVSLPFAISPSRLLQASTLLILGDTQYARDPTASAQVGPAFNLSVYMLFLGHASQGAESTHQAESPVYG LRHGERKPMWQEVIHKARVRLCRSPQPPELEDNQAQDTLNGLDVSGERLEFSYYLEIVEDLDDGRVHDDQEPGPP NGQISRTGILETIPAYQLSKIFYTDTGRILNIGRGEEGESSPVLLLKRDLTAARPRRARDGTHDAEDVAKDETKT PCSSKDDQEEVDRQLREESTREPGHSRDGSSRLPKQFDPEWLALGVYEEEDAGPDDSETEDGSLSGSEDQVHDTD RTQRPKSVAQGAMLDSMLAAQVRNLGLSSGPDTGETRGNESPPKMQTPSANEPRTDDFVARSPFNVITSSLSLIE MLIRLAGLQEFQQTCHLSIPDHVLTFFLEETSTTAGGFWSRGGLKRSPGYELTAKQMEKGSSVYEHVLGASLRHT RFVSTSSDPRVALEFADELHRYGFPMWFGYLYKIAADWKMVDVSGTLLDQYHLRQSEHVVVGGIPFEQVMGWYDL SKLGYQEWTTKTRSVMKLLENDQTLRGYKANPLFNPRYLTTRGAGGKPQLAGFPRGDKNWRREPWKRFAGTSATE ALQIYVRQNLDPKNDDIRNWQWALPSGSIAASSGRNTSTETASGKPKLPSSRGKSSDLGRACDANAGCRIL* |
| Coding | >Ophcf2|01143 ATGGATGAGTTCCTGGCTGCGGTCGGTGTCCAGGCCATGAAATATGCCATCAGATCCGGCATCGCCTTGACGTCT ACCTACGCGCTGGGCCAGTGCTCGCGCCTGTTGAAGACGGTCGACGACAAGAAGCTCTACGGTGAGTTGTCGAGG CTTCAGAAGCTGCTGGACGGGAAAATGAGGGTCATCACGCCCGCCATCGACCTGATCGAGTTCAAATCTGGCCGT GGCAACGTCTTTCTCGAATCCGCAGTCCCCCTGACGAAATCCCTTTACCAAGATATCAACTCCCTCGGTCGCAGA ATCGCCTCGGCCGTATCATCGGACGAGAGCCTCGCTGACGCGGACCGGATCGCTCAACAACGCGGCAAACTTTGC GAGGTCATATCCGAAATAAGGGGTCTGCTGGATCGTATCGACCACGAGATTCCTCTGCTGCAACTCGCCATCACG GCATCTGGCGAGTCTCTATCGGTCTCTCTACCGTTCGCCATCTCGCCGTCCAGACTTCTGCAGGCGAGCACCTTG CTCATCCTGGGCGACACTCAGTATGCTCGAGATCCCACGGCGTCGGCTCAGGTCGGTCCGGCCTTCAACTTGTCT GTCTACATGTTGTTCCTAGGCCACGCGTCGCAAGGGGCCGAATCTACGCATCAGGCCGAATCGCCTGTTTACGGA CTACGACATGGCGAGAGAAAACCGATGTGGCAGGAAGTCATTCACAAGGCCCGGGTGCGACTGTGTCGATCACCA CAGCCTCCAGAACTCGAGGATAACCAAGCTCAAGATACGCTCAACGGCCTCGATGTCTCGGGCGAAAGGCTCGAG TTTTCCTACTATCTCGAAATAGTAGAGGATCTAGACGACGGAAGAGTGCATGACGATCAGGAACCTGGACCTCCT AATGGCCAAATCTCGAGAACGGGTATTCTCGAGACCATTCCCGCCTATCAGCTGTCCAAGATCTTCTACACCGAT ACCGGCAGAATACTCAACATTGGCAGAGGAGAAGAGGGCGAGAGCAGCCCGGTCCTCCTCCTAAAACGAGACCTG ACGGCCGCTCGGCCGCGACGGGCACGGGATGGCACGCACGATGCGGAAGATGTAGCAAAAGACGAGACCAAGACA CCCTGTTCTTCCAAAGATGACCAAGAAGAGGTCGATCGCCAGTTGCGAGAAGAGAGCACCCGAGAACCTGGCCAT TCACGAGATGGATCATCGCGACTGCCCAAGCAGTTTGATCCCGAGTGGTTGGCCTTGGGGGTCTACGAAGAGGAA GACGCCGGGCCAGACGACAGCGAGACGGAGGACGGGTCGCTTAGCGGAAGCGAAGATCAAGTTCATGACACGGAC CGCACGCAGCGACCCAAGTCGGTTGCGCAAGGGGCGATGCTGGACTCGATGCTGGCGGCTCAAGTGAGAAACCTC GGGCTGTCATCGGGCCCGGACACAGGCGAGACTCGCGGCAACGAATCACCACCCAAGATGCAGACTCCAAGTGCC AATGAACCAAGAACAGACGACTTCGTGGCGCGGTCGCCATTCAACGTCATCACGTCGTCCCTATCACTGATAGAG ATGCTGATCCGTCTGGCCGGACTTCAAGAGTTTCAGCAGACATGCCACCTATCGATTCCCGATCACGTCCTTACC TTTTTCCTGGAGGAAACTTCAACCACCGCCGGGGGATTCTGGTCCAGGGGAGGGCTGAAGAGGTCACCCGGCTAT GAGCTCACGGCAAAGCAGATGGAGAAGGGGAGTAGTGTGTATGAGCATGTTCTTGGCGCGAGTCTCAGACACACG AGATTCGTCTCTACCAGTTCGGATCCGCGGGTTGCTCTGGAATTTGCCGATGAGCTTCACCGTTATGGCTTTCCC ATGTGGTTCGGCTACCTGTACAAGATTGCCGCCGACTGGAAGATGGTTGACGTCTCGGGAACTCTCCTGGATCAA TATCACTTGAGACAGAGTGAACACGTCGTTGTCGGTGGCATTCCCTTTGAGCAGGTCATGGGCTGGTACGATTTA TCCAAGCTAGGTTACCAAGAATGGACGACAAAAACCCGAAGCGTCATGAAATTGCTGGAAAACGACCAGACGCTA CGGGGCTACAAAGCCAACCCCCTGTTCAATCCGAGATACCTCACCACGAGAGGCGCAGGCGGGAAACCGCAACTG GCTGGGTTCCCTCGTGGAGACAAGAATTGGCGCAGAGAGCCCTGGAAGCGATTTGCAGGGACTTCGGCGACGGAG GCTCTCCAAATATATGTGCGGCAGAATCTCGATCCCAAGAACGATGATATTCGTAACTGGCAGTGGGCGCTTCCG AGCGGCAGCATCGCCGCGTCCAGCGGTAGGAACACGAGCACTGAGACAGCGAGTGGCAAGCCGAAGCTGCCTTCT TCTAGAGGCAAGAGTTCTGATCTGGGCCGGGCCTGCGATGCCAACGCGGGCTGCAGGATACTTTGA |
| Transcript | >Ophcf2|01143 ATGGATGAGTTCCTGGCTGCGGTCGGTGTCCAGGCCATGAAATATGCCATCAGATCCGGCATCGCCTTGACGTCT ACCTACGCGCTGGGCCAGTGCTCGCGCCTGTTGAAGACGGTCGACGACAAGAAGCTCTACGGTGAGTTGTCGAGG CTTCAGAAGCTGCTGGACGGGAAAATGAGGGTCATCACGCCCGCCATCGACCTGATCGAGTTCAAATCTGGCCGT GGCAACGTCTTTCTCGAATCCGCAGTCCCCCTGACGAAATCCCTTTACCAAGATATCAACTCCCTCGGTCGCAGA ATCGCCTCGGCCGTATCATCGGACGAGAGCCTCGCTGACGCGGACCGGATCGCTCAACAACGCGGCAAACTTTGC GAGGTCATATCCGAAATAAGGGGTCTGCTGGATCGTATCGACCACGAGATTCCTCTGCTGCAACTCGCCATCACG GCATCTGGCGAGTCTCTATCGGTCTCTCTACCGTTCGCCATCTCGCCGTCCAGACTTCTGCAGGCGAGCACCTTG CTCATCCTGGGCGACACTCAGTATGCTCGAGATCCCACGGCGTCGGCTCAGGTCGGTCCGGCCTTCAACTTGTCT GTCTACATGTTGTTCCTAGGCCACGCGTCGCAAGGGGCCGAATCTACGCATCAGGCCGAATCGCCTGTTTACGGA CTACGACATGGCGAGAGAAAACCGATGTGGCAGGAAGTCATTCACAAGGCCCGGGTGCGACTGTGTCGATCACCA CAGCCTCCAGAACTCGAGGATAACCAAGCTCAAGATACGCTCAACGGCCTCGATGTCTCGGGCGAAAGGCTCGAG TTTTCCTACTATCTCGAAATAGTAGAGGATCTAGACGACGGAAGAGTGCATGACGATCAGGAACCTGGACCTCCT AATGGCCAAATCTCGAGAACGGGTATTCTCGAGACCATTCCCGCCTATCAGCTGTCCAAGATCTTCTACACCGAT ACCGGCAGAATACTCAACATTGGCAGAGGAGAAGAGGGCGAGAGCAGCCCGGTCCTCCTCCTAAAACGAGACCTG ACGGCCGCTCGGCCGCGACGGGCACGGGATGGCACGCACGATGCGGAAGATGTAGCAAAAGACGAGACCAAGACA CCCTGTTCTTCCAAAGATGACCAAGAAGAGGTCGATCGCCAGTTGCGAGAAGAGAGCACCCGAGAACCTGGCCAT TCACGAGATGGATCATCGCGACTGCCCAAGCAGTTTGATCCCGAGTGGTTGGCCTTGGGGGTCTACGAAGAGGAA GACGCCGGGCCAGACGACAGCGAGACGGAGGACGGGTCGCTTAGCGGAAGCGAAGATCAAGTTCATGACACGGAC CGCACGCAGCGACCCAAGTCGGTTGCGCAAGGGGCGATGCTGGACTCGATGCTGGCGGCTCAAGTGAGAAACCTC GGGCTGTCATCGGGCCCGGACACAGGCGAGACTCGCGGCAACGAATCACCACCCAAGATGCAGACTCCAAGTGCC AATGAACCAAGAACAGACGACTTCGTGGCGCGGTCGCCATTCAACGTCATCACGTCGTCCCTATCACTGATAGAG ATGCTGATCCGTCTGGCCGGACTTCAAGAGTTTCAGCAGACATGCCACCTATCGATTCCCGATCACGTCCTTACC TTTTTCCTGGAGGAAACTTCAACCACCGCCGGGGGATTCTGGTCCAGGGGAGGGCTGAAGAGGTCACCCGGCTAT GAGCTCACGGCAAAGCAGATGGAGAAGGGGAGTAGTGTGTATGAGCATGTTCTTGGCGCGAGTCTCAGACACACG AGATTCGTCTCTACCAGTTCGGATCCGCGGGTTGCTCTGGAATTTGCCGATGAGCTTCACCGTTATGGCTTTCCC ATGTGGTTCGGCTACCTGTACAAGATTGCCGCCGACTGGAAGATGGTTGACGTCTCGGGAACTCTCCTGGATCAA TATCACTTGAGACAGAGTGAACACGTCGTTGTCGGTGGCATTCCCTTTGAGCAGGTCATGGGCTGGTACGATTTA TCCAAGCTAGGTTACCAAGAATGGACGACAAAAACCCGAAGCGTCATGAAATTGCTGGAAAACGACCAGACGCTA CGGGGCTACAAAGCCAACCCCCTGTTCAATCCGAGATACCTCACCACGAGAGGCGCAGGCGGGAAACCGCAACTG GCTGGGTTCCCTCGTGGAGACAAGAATTGGCGCAGAGAGCCCTGGAAGCGATTTGCAGGGACTTCGGCGACGGAG GCTCTCCAAATATATGTGCGGCAGAATCTCGATCCCAAGAACGATGATATTCGTAACTGGCAGTGGGCGCTTCCG AGCGGCAGCATCGCCGCGTCCAGCGGTAGGAACACGAGCACTGAGACAGCGAGTGGCAAGCCGAAGCTGCCTTCT TCTAGAGGCAAGAGTTCTGATCTGGGCCGGGCCTGCGATGCCAACGCGGGCTGCAGGATACTTTGA |
| Gene | >Ophcf2|01143 ATGGATGAGTTCCTGGCTGCGGTCGGTGTCCAGGCCATGAAATATGCCATCAGATCCGGCATCGCCTTGACGTCT ACCTACGCGCTGGGCCAGTGCTCGCGCCTGTTGAAGACGGTCGACGACAAGAAGCTCTACGGTGAGTTGTCGAGG CTTCAGAAGCTGCTGGACGGGAAAATGAGGGTAAAACAACAAGACATCTCACTCTATCTCCTCCTGGCTTGAAGC TGACTCGGTCAAGGTCATCACGCCCGCCATCGACCTGATCGAGTTCAAGTCGGTCGACATGAGAAAATTGAAATA GTGGGAGCCTGGTCCTGACGAGGAGGCAGATCTGGCCGTGGCAACGTCTTTCTCGAATCCGCAGTCCCCCTGACG AAATCCCTTTACCAAGATATCAACTCCCTCGGTCGCAGAATCGCCTCGGCCGTATCATCGGACGAGAGCCTCGCT GACGCGGACCGGATCGCTCAACAACGCGGCAAACTTTGCGAGGTCATATCCGAAATAAGGGGTCTGCTGGATCGT ATCGACCACGAGATTCCTCTGCTGCAACTCGCCATCACGGCATCTGGCGAGTCTCTATCGGTCTCTCTACCGTTC GCCATCTCGCCGTCCAGACTTCTGCAGGCGAGCACCTTGCTCATCCTGGGCGACACTCAGTATGCTCGAGATCCC ACGGCGTCGGCTCAGGTCGGTCCGGCCTTCAACTTGTCTGTCTACATGTTGTTCCTAGGCCACGCGTCGCAAGGG GCCGAATCTACGCATCAGGCCGAATCGCCTGTTTACGGACTACGACATGGCGAGAGAAAACCGATGTGGCAGGAA GTCATTCACAAGGCCCGGGTGCGACTGTGTCGATCACCACAGCCTCCAGAACTCGAGGATAACCAAGCTCAAGAT ACGCTCAACGGCCTCGATGTCTCGGGCGAAAGGCTCGAGTTTTCCTACTATCTCGAAATAGTAGAGGATCTAGAC GACGGAAGAGTGCATGACGATCAGGAACCTGGACCTCCTAATGGCCAAATCTCGAGAACGGGTATTCTCGAGACC ATTCCCGCCTATCAGCTGTCCAAGATCTTCTACACCGATACCGGCAGAATACTCAACATTGGCAGAGGAGAAGAG GGCGAGAGCAGCCCGGTCCTCCTCCTAAAACGAGACCTGACGGCCGCTCGGCCGCGACGGGCACGGGATGGCACG CACGATGCGGAAGATGTAGCAAAAGACGAGACCAAGACACCCTGTTCTTCCAAAGATGACCAAGAAGAGGTCGAT CGCCAGTTGCGAGAAGAGAGCACCCGAGAACCTGGCCATTCACGAGATGGATCATCGCGACTGCCCAAGCAGTTT GATCCCGAGTGGTTGGCCTTGGGGGTCTACGAAGAGGAAGACGCCGGGCCAGACGACAGCGAGACGGAGGACGGG TCGCTTAGCGGAAGCGAAGATCAAGTTCATGACACGGACCGCACGCAGCGACCCAAGTCGGTTGCGCAAGGGGCG ATGCTGGACTCGATGCTGGCGGCTCAAGTGAGAAACCTCGGGCTGTCATCGGGCCCGGACACAGGCGAGACTCGC GGCAACGAATCACCACCCAAGATGCAGACTCCAAGTGCCAATGAACCAAGAACAGACGACTTCGTGGCGCGGTCG CCATTCAACGTCATCACGTCGTCCCTATCACTGATAGAGATGCTGATCCGTCTGGCCGGACTTCAAGAGTTTCAG CAGACATGCCACCTATCGATTCCCGATCACGTCCTTACCTTTTTCCTGGAGGAAACTTCAACCACCGGTCTGTCC GGCGAGGCTCGACAGACGGTCCGGAGCGAGGCGAAGCGGCGCGTGGGCTTTGATCCTTACACAGATACCCCGGCA GTAGCACACGGATGAATAAAGGCTTTCGTTTCCTGGCCGACGGGCTTCCGTGACGAGCATAGCTTCAGAGATTGC TTTTGCTACGAAGCACACGTCGAGACAATGCCAAGTTACAATGCTTTCCTGAAGTATTTTATCCTGGTGGCGCTC CAAATGAGAGCGTCTCTTTGAGCCAATTCCCCCATCTTTCGATGTGTTGCCTACGGCGTCAGGCTCTATCTCGAG CGCGCCTAGTCCATGTTCAATGATTGTACCGCATCTTCCAGTGTCTTCTTTTCACAGTACATCATGACAAGAACG TCAGCCGCAGAATGCATGTTGACCATCGAAAGGTCTTGTGTCTATCTGTTTCTGCTTGATTACAGCAGCTTCCTT GTGGTTGTCAAAGTAGGCGACCTGCCCTTCGACGCAGTCTACGAATACAAGGCAAGACGTCTAAGTTCTCCAGAC TCATCATGCCCTGTCAATAGGCAATCTCGCAAGATAATTCCTACTTGGGAAGGCTACAACAGTGCTGCTTCATAG TGATCAAACTCTATCGACATTGATCCTTCAACGATCTACGCTGCGGGAAGTTAGACTCATTCATTAATACATACA TATAGATGCCATATTCTGGGGACAGCATACCACATAACATGGCTATAAGTACACCCATGTCCCTACCCCATCCAC CCGCAAAGCATTCAGACAAGCTCTTCTACAGAGAAGCGCAACATGATGAAAGCACCGAATCTCTCTCTCCTCATC TGGACGGCAGTATCCTTCCTCTCACTAGGAGGGCAAAGCTCGCCCTCAGCTAACCCCCAGCCAAAGTTCGTTTGG CGTGGAGAACCGCCGCAGCGGACACCGATAGAAGTCGGATCAGCCGGGGGATTCTGGTCCAGGGGAGGGCTGAAG AGGTCACCCGGCTATGAGCTCACGGCAAAGCAGATGGAGAAGGGGAGTAGTGTGTATGAGCATGTTCTTGGCGCG AGTCTCAGACACACGAGATTCGTCTCTACCAGTTCGGATCCGCGGGTTGCTCTGGAATTTGCCGATGAGCTTCAC CGTTATGGCTTTCCCATGTGGTTCGGCTACCTGTACAAGATTGCCGCCGACTGGAAGATGGTTGACGTCTCGGGA ACTCTCCTGGATCAATATCACTTGAGACAGAGTGAACACGTCGTTGTCGGTGGCATTCCCTTTGAGCAGGTCATG GGCTGGTACGATTTATCCAAGCTAGGTTACCAAGAATGGACGACAAAAACCCGAAGCGTCATGAAATTGCTGGAA AACGACCAGACGCTACGGGGCTACAAAGCCAACCCCCTGTTCAATCCGAGATACCTCACCACGAGAGGCGCAGGC GGGAAACCGCAACTGGCTGGGTTCCCTCGTGGAGACAAGAATTGGCGCAGAGAGCCCTGGAAGCGATTTGCAGGG ACTTCGGCGACGGAGGCTCTCCAAATATATGTGCGGCAGAATCTCGATCCCAAGAACGATGATATTCGTAACTGG CAGTGGGCGCTTCCGAGCGGCAGCATCGCCGCGTCCAGCGGTAGGAACACGAGCACTGAGACAGCGAGTGGCAAG CCGAAGCTGCCTTCTTCTAGAGGCAAGAGTTCTGATCTGGGCCGGGCCTGCGATGCCAACGCGGGCTGCAGGATA CTTTGA |