© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01140 |
| Gene name | |
| Location | scaffold_01:4167091..4167965 |
| Strand | + |
| Gene length (bp) | 874 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 67.47 | 36.23 | 98.71 |
| Alive | In ants, during behavior modification | 12.75 | 4.15 | 21.36 |
| Dead | In ants, recently dead | 20.49 | 7.97 | 33.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.047450 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01140 MDAIEMQKWTYVEDLPDDIASVRDLLRRYSSISEHDIDSRLRRARGDAWRVAPCPSVGRWRFLRLHDYEDPCYRQ VVFRLSLPESRDVFLDLGCCVGQVLRQLRAAGVQGPQLIGTDVKSELIDIGYDLFDDRDRLGATFVVGDMVDPDD SRLDRLRGAVTIIYAGSFFHLFSWTQQLYIGRRLVSFLKPKTRNGLVYGRHVGTTRPGEVSDGISSVYLHDRDSF QELWNEIGRLTGTRWMADMEASQEAVCLLQQRQKHLRPFSFTVYQLS* |
| Coding | >Ophcf2|01140 ATGGACGCGATTGAGATGCAGAAGTGGACCTACGTCGAGGATTTACCGGACGATATTGCCTCCGTGAGGGACCTG CTACGAAGGTACAGCAGCATTTCCGAGCACGACATTGACAGTCGCCTGCGGCGCGCGCGCGGAGACGCTTGGCGC GTGGCGCCATGTCCCTCTGTCGGTCGCTGGAGGTTCCTACGCCTGCATGACTACGAGGACCCCTGTTACCGGCAG GTCGTGTTCAGGCTCAGCCTCCCCGAGTCCAGGGATGTCTTTCTGGACCTTGGCTGCTGTGTCGGCCAGGTCTTG CGCCAGCTTCGCGCTGCCGGTGTCCAGGGGCCTCAGCTGATCGGAACAGATGTCAAATCCGAACTCATTGACATC GGCTACGATCTGTTTGACGATCGGGATCGCCTAGGTGCCACTTTTGTCGTTGGTGATATGGTTGATCCCGACGAC AGCCGTCTCGACCGGCTGCGTGGCGCAGTCACCATCATCTACGCCGGCAGCTTCTTTCACCTCTTCAGCTGGACG CAGCAGCTGTATATTGGCAGGCGTCTGGTCAGCTTTCTGAAGCCCAAGACTAGGAACGGTCTGGTGTACGGTAGG CACGTCGGCACCACGCGGCCCGGTGAGGTGTCAGACGGCATCAGTTCGGTGTACCTGCATGACCGAGACAGTTTT CAAGAGCTTTGGAACGAGATTGGCCGTTTGACTGGAACGCGATGGATGGCCGATATGGAGGCATCGCAAGAGGCT GTCTGTCTCTTGCAGCAGCGCCAGAAGCATCTGCGGCCATTCAGCTTCACCGTGTACCAGTTGTCCTGA |
| Transcript | >Ophcf2|01140 ATGGACGCGATTGAGATGCAGAAGTGGACCTACGTCGAGGATTTACCGGACGATATTGCCTCCGTGAGGGACCTG CTACGAAGGTACAGCAGCATTTCCGAGCACGACATTGACAGTCGCCTGCGGCGCGCGCGCGGAGACGCTTGGCGC GTGGCGCCATGTCCCTCTGTCGGTCGCTGGAGGTTCCTACGCCTGCATGACTACGAGGACCCCTGTTACCGGCAG GTCGTGTTCAGGCTCAGCCTCCCCGAGTCCAGGGATGTCTTTCTGGACCTTGGCTGCTGTGTCGGCCAGGTCTTG CGCCAGCTTCGCGCTGCCGGTGTCCAGGGGCCTCAGCTGATCGGAACAGATGTCAAATCCGAACTCATTGACATC GGCTACGATCTGTTTGACGATCGGGATCGCCTAGGTGCCACTTTTGTCGTTGGTGATATGGTTGATCCCGACGAC AGCCGTCTCGACCGGCTGCGTGGCGCAGTCACCATCATCTACGCCGGCAGCTTCTTTCACCTCTTCAGCTGGACG CAGCAGCTGTATATTGGCAGGCGTCTGGTCAGCTTTCTGAAGCCCAAGACTAGGAACGGTCTGGTGTACGGTAGG CACGTCGGCACCACGCGGCCCGGTGAGGTGTCAGACGGCATCAGTTCGGTGTACCTGCATGACCGAGACAGTTTT CAAGAGCTTTGGAACGAGATTGGCCGTTTGACTGGAACGCGATGGATGGCCGATATGGAGGCATCGCAAGAGGCT GTCTGTCTCTTGCAGCAGCGCCAGAAGCATCTGCGGCCATTCAGCTTCACCGTGTACCAGTTGTCCTGA |
| Gene | >Ophcf2|01140 ATGGACGCGATTGAGATGCAGAAGTGGACCTACGTCGAGGATTTACCGGACGATATTGCCTCCGTGAGGGACCTG CTACGAAGGTACAGCAGCATTTCCGAGCACGACATTGACAGTCGCCTGCGGCGCGCGGTGAGCTCCGACCTTTAT ATCCAGTTCTGCAACGCCGCTGACACTCCTGATGCAGCGCGGAGACGCTTGGCGCGTGGCGCCATGTCCCTCTGT CGGTCGCTGGAGGTTCCTACGCCTGCATGACTACGAGGACCCCTGTTACCGGCAGGTCGTGTTCAGGCTCAGCCT CCCCGAGTCCAGGGATGTCTTTCTGGACCTTGGCTGCTGTGTCGGCCAGGTCTTGCGCCAGCTTCGCGCTGCCGG TGTCCAGGGGCCTCAGCTGATCGGAACAGATGTCAAATCCGAACTCATTGACATCGGCTACGATCTGTTTGACGA TCGGGATCGCCTAGGTGCCACTTTTGTCGTTGGTGATATGGTTGATCCCGACGACAGCCGTCTCGACCGGCTGCG TGGCGCAGTCACCATCATCTACGCCGGCAGCTTCTTTCACCTCTTCAGCTGGACGCAGCAGCTGTATATTGGCAG GCGTCTGGTCAGCTTTCTGAAGCCCAAGACTAGGAACGGTCTGGTGTACGGTAGGCACGTCGGCACCACGCGGCC CGGTGAGGTGTCAGACGGCATCAGTTCGGTGTACCTGCATGACCGAGACAGTTTTCAAGAGCTTTGGAACGAGAT TGGCCGTTTGACTGGAACGCGATGGATGGCCGATATGGAGGCATCGCAAGAGGCTGTCTGTCTCTTGCAGCAGCG CCAGAAGCATCTGCGGCCATTCAGCTTCACCGTGTACCAGTTGTCCTGA |