© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01139 |
| Gene name | |
| Location | scaffold_01:4164135..4167016 |
| Strand | - |
| Gene length (bp) | 2881 |
| Transcript length (bp) | 2319 |
| Coding sequence length (bp) | 2319 |
| Protein length (aa) | 773 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 8.3E-09 | 220 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:0050789 | regulation of biological process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 58.08 | 33.00 | 83.16 |
| Alive | In ants, during behavior modification | 68.87 | 38.47 | 99.27 |
| Dead | In ants, recently dead | 67.63 | 37.87 | 97.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.403584 | no |
| Alive | Dead | 0.931093 | no |
| Dead | Fungus | 0.472999 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01139 MMVDIAARMRIKAARVYWLRLGPLRRGQATAETRPISPGQRALASGHATHPAALAAMSPSRQGEPEEASGLTYPS PSAEAMDAGPFYHANARDGPSDHPDQADQHGQHDVVQDQGQMPPHDSASPPQHVSRPANLEELQLAAQLGDGLAG NPMIPATDPNMNVDEHGMRSIMPHPDTEHHQNAQYVHDAPPTDHLAMPVGPPQYQMNDGIPPRKRSKVSRACDEC RRKKIKCDAQSDSGDNPCSSCARSSIRCLFSRVPQKRGPSKGYIKELADRIHSIENKLESEGNLTQDDIDKLFAP DRSRSHDQGTPGDELSRKRPYSSISTADVNTPVTARQAPWGSEPRPSTSSEGFPHEGYANSALAPQPSAMKPEPT PSKPPVASMDATMADVDEVLDVDEGALKEYLTTVQPTFPILPSTTWRMQSLLSQCPSSLREAFRIALATAAQQES PGDVKHADALLREWDNSDGSSSRASDMVHAQTLLLLSIDADRRELPTLPSLLARAVALANSMKLWRLVAVDATDG DSDDALSLKIWWSLVLMDRWHAAGTGKPVLIPDSSVVAMAGLATVLGEVCFYLTRLSKVLVRIALVLSAMPAGAT TADANMATMLKDYVEDYREDLPPHVDVTSFPLVHMAYWHCRLLVTLLTPGSTALEMMWPARELSGLLMAGGQQRS PLAHHFASLAALCLTKLAKTDKTREDATQRIRDMLEAAPGGQWDGVQARLAEQMGPRSSAEATASQGLQHLADLA TAHEGIEVAFGPALAAGYLDVQ* |
| Coding | >Ophcf2|01139 ATGATGGTCGACATCGCTGCCCGGATGAGGATCAAAGCAGCCCGAGTTTACTGGCTTCGACTTGGGCCTTTGCGC CGCGGACAGGCGACAGCAGAGACGCGACCTATTTCACCTGGCCAACGAGCATTGGCCTCTGGACACGCGACGCAC CCAGCCGCGCTCGCCGCTATGAGCCCGAGCAGGCAGGGCGAGCCTGAGGAGGCTTCCGGCCTCACCTACCCGTCG CCGAGCGCAGAGGCCATGGACGCGGGACCGTTTTACCACGCCAACGCCCGCGACGGGCCTTCGGACCATCCAGAC CAGGCGGACCAGCATGGTCAGCACGACGTGGTCCAGGACCAGGGCCAGATGCCGCCTCATGACTCGGCCTCTCCG CCGCAGCACGTCTCGCGTCCGGCTAATCTGGAGGAGCTTCAGCTTGCCGCCCAGCTGGGTGATGGCCTTGCCGGG AACCCAATGATACCGGCTACGGATCCCAACATGAATGTCGACGAACATGGCATGCGAAGCATCATGCCTCATCCC GACACCGAGCACCATCAGAACGCCCAGTACGTCCACGACGCGCCACCCACTGACCACCTGGCCATGCCGGTAGGA CCGCCTCAGTATCAGATGAACGACGGTATCCCTCCGCGCAAACGGTCCAAAGTGTCACGCGCCTGCGACGAGTGT CGACGTAAAAAGATCAAGTGCGACGCGCAGTCCGACTCTGGCGATAATCCGTGTTCCAGTTGTGCGCGGTCGTCC ATCCGCTGCTTGTTCAGCCGTGTGCCACAGAAGCGAGGCCCGAGTAAAGGATACATCAAGGAACTTGCGGACAGG ATTCATAGCATCGAGAATAAGCTCGAATCAGAGGGCAATTTGACGCAGGACGACATCGACAAGTTGTTCGCCCCC GATCGATCCAGGAGCCATGACCAGGGCACTCCAGGCGATGAACTCAGCCGGAAAAGGCCGTATTCGAGCATATCG ACGGCCGACGTCAATACCCCGGTGACGGCGCGCCAGGCGCCCTGGGGCTCGGAGCCTCGGCCATCGACGTCGTCC GAGGGGTTCCCCCATGAAGGATATGCGAACAGCGCGCTTGCGCCCCAACCGTCGGCGATGAAGCCCGAGCCAACA CCGTCGAAGCCGCCAGTGGCGTCGATGGATGCCACCATGGCCGATGTCGACGAAGTATTGGATGTGGACGAGGGT GCTCTCAAGGAATACTTGACGACGGTCCAGCCTACGTTCCCCATTCTACCCAGCACTACCTGGCGCATGCAGTCG TTGCTGTCGCAGTGCCCGTCGTCTCTCCGGGAAGCGTTCCGCATCGCGCTCGCCACGGCGGCGCAGCAAGAGTCG CCGGGCGACGTCAAGCATGCTGATGCGCTCCTGCGTGAGTGGGATAATAGCGACGGGTCGAGCAGCCGGGCATCG GACATGGTGCACGCGCAGACGCTGCTGCTGCTCAGCATCGATGCGGACCGACGAGAGCTGCCGACGCTGCCATCA CTCCTGGCGCGGGCCGTGGCATTGGCAAACAGCATGAAGCTATGGAGGCTCGTCGCGGTTGATGCGACAGACGGC GACTCTGACGACGCGCTTTCGCTCAAGATTTGGTGGTCGCTGGTACTAATGGACCGCTGGCACGCGGCGGGGACG GGGAAGCCGGTGTTGATTCCCGACAGCAGCGTGGTGGCCATGGCTGGCCTGGCAACGGTTCTGGGCGAGGTCTGT TTCTACCTGACCAGGCTATCCAAGGTTCTCGTACGGATCGCGCTGGTTCTATCAGCAATGCCAGCCGGGGCGACG ACGGCAGACGCCAACATGGCGACGATGCTGAAGGACTACGTGGAGGACTATAGAGAGGACCTGCCGCCTCACGTG GACGTGACGTCATTTCCGCTGGTGCACATGGCATACTGGCACTGCCGGCTGCTGGTGACGCTGCTGACGCCGGGG TCGACTGCGCTGGAGATGATGTGGCCGGCCAGGGAGCTCAGCGGCTTGCTGATGGCGGGCGGACAGCAACGAAGC CCGCTGGCGCACCACTTCGCCTCTCTGGCGGCGCTGTGCCTGACGAAGCTGGCCAAGACGGACAAGACGCGCGAA GACGCTACGCAGCGGATCCGGGACATGCTCGAGGCCGCTCCGGGAGGGCAGTGGGACGGGGTGCAGGCGAGGCTG GCGGAACAAATGGGACCACGATCATCGGCAGAGGCTACGGCCAGCCAGGGACTGCAGCACCTGGCGGATCTGGCG ACGGCGCACGAGGGCATCGAGGTGGCCTTTGGGCCGGCGCTGGCGGCGGGCTACCTGGACGTGCAGTGA |
| Transcript | >Ophcf2|01139 ATGATGGTCGACATCGCTGCCCGGATGAGGATCAAAGCAGCCCGAGTTTACTGGCTTCGACTTGGGCCTTTGCGC CGCGGACAGGCGACAGCAGAGACGCGACCTATTTCACCTGGCCAACGAGCATTGGCCTCTGGACACGCGACGCAC CCAGCCGCGCTCGCCGCTATGAGCCCGAGCAGGCAGGGCGAGCCTGAGGAGGCTTCCGGCCTCACCTACCCGTCG CCGAGCGCAGAGGCCATGGACGCGGGACCGTTTTACCACGCCAACGCCCGCGACGGGCCTTCGGACCATCCAGAC CAGGCGGACCAGCATGGTCAGCACGACGTGGTCCAGGACCAGGGCCAGATGCCGCCTCATGACTCGGCCTCTCCG CCGCAGCACGTCTCGCGTCCGGCTAATCTGGAGGAGCTTCAGCTTGCCGCCCAGCTGGGTGATGGCCTTGCCGGG AACCCAATGATACCGGCTACGGATCCCAACATGAATGTCGACGAACATGGCATGCGAAGCATCATGCCTCATCCC GACACCGAGCACCATCAGAACGCCCAGTACGTCCACGACGCGCCACCCACTGACCACCTGGCCATGCCGGTAGGA CCGCCTCAGTATCAGATGAACGACGGTATCCCTCCGCGCAAACGGTCCAAAGTGTCACGCGCCTGCGACGAGTGT CGACGTAAAAAGATCAAGTGCGACGCGCAGTCCGACTCTGGCGATAATCCGTGTTCCAGTTGTGCGCGGTCGTCC ATCCGCTGCTTGTTCAGCCGTGTGCCACAGAAGCGAGGCCCGAGTAAAGGATACATCAAGGAACTTGCGGACAGG ATTCATAGCATCGAGAATAAGCTCGAATCAGAGGGCAATTTGACGCAGGACGACATCGACAAGTTGTTCGCCCCC GATCGATCCAGGAGCCATGACCAGGGCACTCCAGGCGATGAACTCAGCCGGAAAAGGCCGTATTCGAGCATATCG ACGGCCGACGTCAATACCCCGGTGACGGCGCGCCAGGCGCCCTGGGGCTCGGAGCCTCGGCCATCGACGTCGTCC GAGGGGTTCCCCCATGAAGGATATGCGAACAGCGCGCTTGCGCCCCAACCGTCGGCGATGAAGCCCGAGCCAACA CCGTCGAAGCCGCCAGTGGCGTCGATGGATGCCACCATGGCCGATGTCGACGAAGTATTGGATGTGGACGAGGGT GCTCTCAAGGAATACTTGACGACGGTCCAGCCTACGTTCCCCATTCTACCCAGCACTACCTGGCGCATGCAGTCG TTGCTGTCGCAGTGCCCGTCGTCTCTCCGGGAAGCGTTCCGCATCGCGCTCGCCACGGCGGCGCAGCAAGAGTCG CCGGGCGACGTCAAGCATGCTGATGCGCTCCTGCGTGAGTGGGATAATAGCGACGGGTCGAGCAGCCGGGCATCG GACATGGTGCACGCGCAGACGCTGCTGCTGCTCAGCATCGATGCGGACCGACGAGAGCTGCCGACGCTGCCATCA CTCCTGGCGCGGGCCGTGGCATTGGCAAACAGCATGAAGCTATGGAGGCTCGTCGCGGTTGATGCGACAGACGGC GACTCTGACGACGCGCTTTCGCTCAAGATTTGGTGGTCGCTGGTACTAATGGACCGCTGGCACGCGGCGGGGACG GGGAAGCCGGTGTTGATTCCCGACAGCAGCGTGGTGGCCATGGCTGGCCTGGCAACGGTTCTGGGCGAGGTCTGT TTCTACCTGACCAGGCTATCCAAGGTTCTCGTACGGATCGCGCTGGTTCTATCAGCAATGCCAGCCGGGGCGACG ACGGCAGACGCCAACATGGCGACGATGCTGAAGGACTACGTGGAGGACTATAGAGAGGACCTGCCGCCTCACGTG GACGTGACGTCATTTCCGCTGGTGCACATGGCATACTGGCACTGCCGGCTGCTGGTGACGCTGCTGACGCCGGGG TCGACTGCGCTGGAGATGATGTGGCCGGCCAGGGAGCTCAGCGGCTTGCTGATGGCGGGCGGACAGCAACGAAGC CCGCTGGCGCACCACTTCGCCTCTCTGGCGGCGCTGTGCCTGACGAAGCTGGCCAAGACGGACAAGACGCGCGAA GACGCTACGCAGCGGATCCGGGACATGCTCGAGGCCGCTCCGGGAGGGCAGTGGGACGGGGTGCAGGCGAGGCTG GCGGAACAAATGGGACCACGATCATCGGCAGAGGCTACGGCCAGCCAGGGACTGCAGCACCTGGCGGATCTGGCG ACGGCGCACGAGGGCATCGAGGTGGCCTTTGGGCCGGCGCTGGCGGCGGGCTACCTGGACGTGCAGTGA |
| Gene | >Ophcf2|01139 ATGATGGTCGACATCGCTGCCCGGATGAGGATCAAGTAGCCGGATGTCTCGCGATGCGCACGTGGCACGCGTGTA GTCTCGCACGTGATTTCACGTGACCCTTGTTATAGGGAAGGGTTGGCTAAGCTAATTTCCTAGATACACTTCCGA TTTCTAGTGGGCTATCGGTGGCGGAGCTTCGTCGCCTGAAAAATCTTCCGGGTTTTGACCTGGATTTCCCACGGA ACCTCCTAACACGGGCCGGATTCTTCTTCTTCCGTTAGACGAGGCCCATCGCATTTAATTCGCCGCTCCTAGAGC AGCCCGAGTTTGTGAGTCGAACTTCTTCATCCGCCACCAGCCCCCGATTACCATCATAGGGGCTGGCCGCTCTCC GATTGTCGTCATCGGCCAGCTGACCATGGCCTCAAGACTGGCTTCGACTTGGGCCTTTGCGCCGCGGACAGGCGA CAGCAGAGACGCGACCTATTTCACCTGGCCAACGAGCATTGGCCTCTGGACACGCGACGCACCCAGCCGCGCTCG CCGCTATGAGCCCGAGCAGGCAGGGCGAGCCTGAGGAGGCTTCCGGCCTCACCTACCCGTCGCCGAGCGCAGAGG CCATGGACGCGGGACCGTTTTACCACGCCAACGCCCGCGACGGGCCTTCGGACCATCCAGACCAGGCGGACCAGC ATGGTCAGCACGACGTGGTCCAGGACCAGGGCCAGATGCCGCCTCATGACTCGGCCTCTCCGCCGCAGCACGTCT CGCGTCCGGCTAATCTGGAGGAGCTTCAGCTTGCCGCCCAGCTGGGTGATGGCCTTGCCGGGAACCCAATGATAC CGGCTACGGATCCCAACATGAATGTCGACGAACATGGCATGCGAAGCATCATGCCTCATCCCGACACCGAGCACC ATCAGAACGCCCAGTACGTCCACGACGCGCCACCCACTGACCACCTGGCCATGCCGGTAGGACCGCCTCAGTATC AGATGAACGACGGTATCCCTCCGCGCAAACGGTCCAAAGTGTCACGCGCCTGCGACGAGTGTCGACGTAAAAAGA TCAAGTGCGACGCGCAGTCCGACTCTGGCGATAATCCGTGTTCCAGTTGTGCGCGGTCGTCCATCCGCTGCTTGT TCAGCCGTGTGCCACAGAAGCGAGGCCCGAGTAAAGGGTACACTGTTCTGCCATTTTGCTTCCAGCACACCTTGG CTAAGTCGGCTACAGATACATCAAGGAACTTGCGGACAGGATTCATAGCATCGAGAATAAGCTCGAATCAGAGGG CAATTTGACGCAGGACGACATCGACAAGTTGTTCGCCCCCGATCGATCCAGGAGCCATGACCAGGGCACTCCAGG CGATGAACTCAGCCGGAAAAGGCCGTATTCGAGCATATCGACGGCCGACGTCAATACCCCGGTGACGGCGCGCCA GGCGCCCTGGGGCTCGGAGCCTCGGCCATCGACGTCGTCCGAGGGGTTCCCCCATGAAGGATATGCGAACAGCGC GCTTGCGCCCCAACCGTCGGCGATGAAGCCCGAGCCAACACCGTCGAAGCCGCCAGTGGCGTCGATGGATGCCAC CATGGCCGATGTCGACGAAGTATTGGATGTGGACGAGGGTGCTCTCAAGGAGTGAGCCTCGCTCTACATGGCGAC CCGTTTCTGGCCTGTTGCTGATGAACTCTCTTAAAGATACTTGACGACGGTCCAGCCTACGTTCCCCATTCTACC CAGCACTACCTGGCGCATGCAGTCGTTGCTGTCGCAGTGCCCGTCGTCTCTCCGGGAAGCGTTCCGCATCGCGCT CGCCACGGCGGCGCAGCAAGAGTCGCCGGGCGACGTCAAGCATGCTGATGCGCTCCTGCGTGAGTGGGATAATAG CGACGGGTCGAGCAGCCGGGCATCGGACATGGTGCACGCGCAGACGCTGCTGCTGCTCAGCATCGATGCGGACCG ACGAGAGCTGCCGACGCTGCCATCACTCCTGGCGCGGGCCGTGGCATTGGCAAACAGCATGAAGCTATGGAGGCT CGTCGCGGTTGATGCGACAGACGGCGACTCTGACGACGCGCTTTCGCTCAAGATTTGGTGGTCGCTGGTACTAAT GGACCGCTGGCACGCGGCGGGGACGGGGAAGCCGGTGTTGATTCCCGACAGCAGCGTGGTGGCCATGGCTGGCCT GGCAACGGTTCTGGGCGAGGTCTGTTTCTACCTGACCAGTAAGTGACACTCTCTTACACACTGGAAGCCAACGGC TGACGCGGCGGGTGTTTTCTTCTCTTTTCTTTTTTTTTTTTTTTTGGCAGGGCTATCCAAGGTTCTCGTACGGAT CGCGCTGGTTCTATCAGCAATGCCAGCCGGGGCGACGACGGCAGACGCCAACATGGCGACGATGCTGAAGGACTA CGTGGAGGACTATAGAGAGGACCTGCCGCCTCACGTGGACGTGACGTCATTTCCGCTGGTGCACATGGCATACTG GCACTGCCGGCTGCTGGTGACGCTGCTGACGCCGGGGTCGACTGCGCTGGAGATGATGTGGCCGGCCAGGGAGCT CAGCGGCTTGCTGATGGCGGGCGGACAGCAACGAAGCCCGCTGGCGCACCACTTCGCCTCTCTGGCGGCGCTGTG CCTGACGAAGCTGGCCAAGACGGACAAGACGCGCGAAGACGCTACGCAGCGGATCCGGGACATGCTCGAGGCCGC TCCGGGAGGGCAGTGGGACGGGGTGCAGGCGAGGCTGGCGGAACAAATGGGACCACGATCATCGGCAGAGGCTAC GGCCAGCCAGGGACTGCAGCACCTGGCGGATCTGGCGACGGCGCACGAGGGCATCGAGGTGGCCTTTGGGCCGGC GCTGGCGGCGGGCTACCTGGACGTGCAGTGA |