© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01129 |
| Gene name | |
| Location | scaffold_01:4122536..4125779 |
| Strand | - |
| Gene length (bp) | 3243 |
| Transcript length (bp) | 2631 |
| Coding sequence length (bp) | 2631 |
| Protein length (aa) | 877 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 6.4E-169 | 152 | 840 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 266 | 285 | 19 |
| 2 | 295 | 317 | 22 |
| 3 | 338 | 360 | 22 |
| 4 | 375 | 394 | 19 |
| 5 | 415 | 437 | 22 |
| 6 | 488 | 507 | 19 |
| 7 | 564 | 586 | 22 |
| 8 | 591 | 613 | 22 |
| 9 | 620 | 642 | 22 |
| 10 | 672 | 694 | 22 |
| 11 | 738 | 760 | 22 |
| 12 | 785 | 807 | 22 |
| 13 | 819 | 841 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01129 MPTRKVRVDEDQATMKEAMENGRGSNKGDKAIILEKMPSDDAETTGSLKHLDATEDDILEARELAASMSLETVHG MMKKVLADHENDPNFNHATVEVIKTFLSDQDVLLNPEKHEQLVERIKLEAALIATNSPYAEVRANVDNHDKADMP VSTIRAWTLGCLFSVLLSFVNQLFSVRQPSIKFETNVAQLLSYPLGKCWERWMPRYDVPIPFTGRSVSLNPGPFN KKEHMLIAIMANTSKSLPYTNFMIWTQVLPQGFNQQYARSAGYMFLNAFATNFIGYGLAGVMRKILVKPAYCIWP TVFSTIALNAALHPGAGDETKTVRGPMRTTWTMSRYRFFLYTFFAMLVYFWFPNYLFQALSYFSWMTWIAPDNLT LNIFTGMQNGLGLFNPFPTFDWNCMTYITDPLMLPSTTTFNAVGGMFLTGLLIPIAWFTNTWNTGYLPILTNRVH DHFGKLYNISNTLDSRGMFDAEKYAEYSRPYLGAANALAYGWHFAIYTAIITHVLLYHRSQMMMGFKSIFKSLRC AFYRRKKKTDRSAGDAVQEERYPDVHNRLMSVYAEIPEWWFCLILAISILLGILGIVLWPTYTSPAVVLYGILLC LLFIVPIGVTVSMTGMEITLNVLAEFIGGVIVEGNALAMNFFKSYGYITCAHAISFLQDLKIAHYVKIPPRVTFM GQMVATLISTTVCTGVFMFQMNIKDVCTASAPMRFFCPGPNTFMTASVLWGTIGPIKVFGKEGYYKWLLMGFPVG FLLVSIVWALQRRYPDSGFLRRINVVVAIAGSLQWAPYSFSYAWPALPVAWYSWIYVRSRHLNFWSRYNYVLSAS LSAGVAISAIIMLFTVQWAGINVNWWGNSQPFKGCEGEPCRLYKLAEGERF* |
| Coding | >Ophcf2|01129 ATGCCGACTCGCAAGGTCAGAGTCGACGAAGACCAGGCTACGATGAAAGAGGCAATGGAGAACGGCCGAGGGAGC AACAAGGGCGACAAAGCCATCATCCTGGAGAAGATGCCCTCGGACGATGCCGAGACGACTGGTAGCCTCAAACAC CTCGATGCTACCGAGGATGATATTCTCGAGGCTAGGGAGTTGGCGGCCTCGATGAGCCTGGAGACGGTCCATGGA ATGATGAAGAAGGTGTTGGCAGACCACGAGAACGATCCCAACTTCAACCACGCCACTGTCGAGGTCATCAAGACG TTTCTGTCCGACCAAGATGTCCTCCTCAACCCGGAGAAGCACGAGCAACTCGTGGAGCGGATCAAGCTCGAAGCA GCCCTCATCGCGACCAACAGCCCCTACGCCGAGGTCCGAGCCAACGTCGACAACCACGACAAGGCCGACATGCCC GTCTCGACCATCCGGGCCTGGACGCTGGGCTGCCTCTTCAGCGTGCTCCTCTCCTTCGTCAACCAGCTCTTCTCG GTCCGGCAGCCGTCCATCAAGTTCGAGACCAACGTCGCCCAGTTGCTATCGTACCCGCTGGGAAAGTGCTGGGAG AGATGGATGCCCCGTTACGATGTGCCCATCCCCTTTACCGGCCGCAGCGTGAGCCTCAATCCGGGACCGTTTAAT AAGAAGGAGCATATGCTCATCGCCATCATGGCCAACACGTCCAAGAGCCTTCCGTACACCAACTTCATGATCTGG ACGCAGGTGTTGCCCCAGGGCTTTAACCAGCAGTACGCTCGCAGCGCGGGATACATGTTCCTCAACGCCTTTGCT ACCAATTTCATCGGTTACGGGTTGGCCGGCGTCATGCGTAAGATCCTCGTCAAGCCGGCTTATTGCATCTGGCCG ACCGTCTTCTCGACCATTGCTCTCAACGCGGCACTGCATCCGGGGGCAGGGGATGAGACCAAGACGGTCAGAGGG CCGATGCGAACGACGTGGACCATGTCTCGTTACCGGTTCTTCCTCTACACCTTCTTCGCCATGCTCGTGTACTTT TGGTTCCCCAACTATCTGTTTCAGGCCTTGTCGTACTTTTCGTGGATGACGTGGATTGCGCCGGACAACCTGACG CTGAACATCTTTACGGGGATGCAGAATGGGCTCGGGCTGTTCAACCCCTTTCCGACCTTTGACTGGAACTGCATG ACCTACATCACCGATCCTCTGATGCTCCCCTCCACCACAACCTTCAACGCCGTGGGCGGCATGTTCCTCACCGGC CTCCTGATCCCCATTGCTTGGTTCACAAACACCTGGAACACGGGCTACCTGCCCATCCTCACGAATCGAGTGCAC GATCACTTCGGTAAGCTGTACAACATCTCCAACACCCTCGACTCGCGCGGCATGTTCGACGCCGAAAAGTACGCC GAGTATTCGCGTCCTTACCTCGGGGCCGCCAACGCGTTGGCCTATGGCTGGCACTTTGCCATTTATACGGCCATT ATAACGCACGTGCTGCTCTATCACAGGTCTCAGATGATGATGGGTTTCAAGAGCATCTTCAAGAGTCTTCGCTGT GCATTCTATAGGAGGAAGAAGAAGACGGATCGGAGTGCCGGTGACGCCGTTCAGGAGGAGAGATACCCAGACGTC CACAACCGCCTGATGTCGGTATACGCAGAGATTCCCGAATGGTGGTTCTGCCTCATCCTGGCCATCTCCATCTTA CTGGGCATCCTCGGAATCGTCCTCTGGCCGACCTACACCTCGCCCGCCGTCGTCCTCTACGGCATCCTTCTATGC CTTCTCTTCATCGTCCCCATCGGCGTGACGGTTAGCATGACGGGCATGGAGATTACGCTCAACGTGCTAGCCGAG TTCATTGGAGGCGTCATCGTCGAGGGCAACGCGCTGGCCATGAACTTTTTCAAGTCTTACGGGTACATTACTTGT GCACACGCCATTTCCTTTCTCCAGGACCTCAAGATAGCTCATTATGTCAAGATCCCTCCCCGGGTCACCTTCATG GGCCAGATGGTAGCCACGCTGATCTCGACCACTGTCTGCACCGGTGTCTTCATGTTCCAGATGAACATCAAGGAC GTCTGCACCGCCTCAGCCCCCATGAGGTTCTTCTGCCCCGGTCCCAACACCTTCATGACGGCTTCCGTCCTCTGG GGCACCATCGGCCCCATAAAGGTATTCGGCAAGGAAGGCTACTACAAGTGGCTCCTGATGGGCTTCCCCGTCGGC TTCCTCCTCGTCTCCATCGTCTGGGCCCTGCAGAGGCGTTATCCAGACTCGGGCTTCCTTCGACGGATCAACGTC GTCGTCGCCATCGCCGGTTCGCTACAGTGGGCTCCCTATAGCTTCTCTTACGCGTGGCCGGCGCTGCCCGTCGCC TGGTACTCGTGGATCTACGTCCGCAGCCGCCATCTCAACTTCTGGTCACGATACAACTACGTTCTCTCGGCCTCG CTCTCGGCCGGCGTCGCCATCTCCGCCATAATCATGCTCTTCACCGTCCAGTGGGCCGGTATCAATGTCAACTGG TGGGGGAACTCTCAGCCGTTCAAGGGTTGCGAGGGTGAGCCTTGCCGGCTGTATAAGCTGGCTGAAGGGGAGAGG TTCTGA |
| Transcript | >Ophcf2|01129 ATGCCGACTCGCAAGGTCAGAGTCGACGAAGACCAGGCTACGATGAAAGAGGCAATGGAGAACGGCCGAGGGAGC AACAAGGGCGACAAAGCCATCATCCTGGAGAAGATGCCCTCGGACGATGCCGAGACGACTGGTAGCCTCAAACAC CTCGATGCTACCGAGGATGATATTCTCGAGGCTAGGGAGTTGGCGGCCTCGATGAGCCTGGAGACGGTCCATGGA ATGATGAAGAAGGTGTTGGCAGACCACGAGAACGATCCCAACTTCAACCACGCCACTGTCGAGGTCATCAAGACG TTTCTGTCCGACCAAGATGTCCTCCTCAACCCGGAGAAGCACGAGCAACTCGTGGAGCGGATCAAGCTCGAAGCA GCCCTCATCGCGACCAACAGCCCCTACGCCGAGGTCCGAGCCAACGTCGACAACCACGACAAGGCCGACATGCCC GTCTCGACCATCCGGGCCTGGACGCTGGGCTGCCTCTTCAGCGTGCTCCTCTCCTTCGTCAACCAGCTCTTCTCG GTCCGGCAGCCGTCCATCAAGTTCGAGACCAACGTCGCCCAGTTGCTATCGTACCCGCTGGGAAAGTGCTGGGAG AGATGGATGCCCCGTTACGATGTGCCCATCCCCTTTACCGGCCGCAGCGTGAGCCTCAATCCGGGACCGTTTAAT AAGAAGGAGCATATGCTCATCGCCATCATGGCCAACACGTCCAAGAGCCTTCCGTACACCAACTTCATGATCTGG ACGCAGGTGTTGCCCCAGGGCTTTAACCAGCAGTACGCTCGCAGCGCGGGATACATGTTCCTCAACGCCTTTGCT ACCAATTTCATCGGTTACGGGTTGGCCGGCGTCATGCGTAAGATCCTCGTCAAGCCGGCTTATTGCATCTGGCCG ACCGTCTTCTCGACCATTGCTCTCAACGCGGCACTGCATCCGGGGGCAGGGGATGAGACCAAGACGGTCAGAGGG CCGATGCGAACGACGTGGACCATGTCTCGTTACCGGTTCTTCCTCTACACCTTCTTCGCCATGCTCGTGTACTTT TGGTTCCCCAACTATCTGTTTCAGGCCTTGTCGTACTTTTCGTGGATGACGTGGATTGCGCCGGACAACCTGACG CTGAACATCTTTACGGGGATGCAGAATGGGCTCGGGCTGTTCAACCCCTTTCCGACCTTTGACTGGAACTGCATG ACCTACATCACCGATCCTCTGATGCTCCCCTCCACCACAACCTTCAACGCCGTGGGCGGCATGTTCCTCACCGGC CTCCTGATCCCCATTGCTTGGTTCACAAACACCTGGAACACGGGCTACCTGCCCATCCTCACGAATCGAGTGCAC GATCACTTCGGTAAGCTGTACAACATCTCCAACACCCTCGACTCGCGCGGCATGTTCGACGCCGAAAAGTACGCC GAGTATTCGCGTCCTTACCTCGGGGCCGCCAACGCGTTGGCCTATGGCTGGCACTTTGCCATTTATACGGCCATT ATAACGCACGTGCTGCTCTATCACAGGTCTCAGATGATGATGGGTTTCAAGAGCATCTTCAAGAGTCTTCGCTGT GCATTCTATAGGAGGAAGAAGAAGACGGATCGGAGTGCCGGTGACGCCGTTCAGGAGGAGAGATACCCAGACGTC CACAACCGCCTGATGTCGGTATACGCAGAGATTCCCGAATGGTGGTTCTGCCTCATCCTGGCCATCTCCATCTTA CTGGGCATCCTCGGAATCGTCCTCTGGCCGACCTACACCTCGCCCGCCGTCGTCCTCTACGGCATCCTTCTATGC CTTCTCTTCATCGTCCCCATCGGCGTGACGGTTAGCATGACGGGCATGGAGATTACGCTCAACGTGCTAGCCGAG TTCATTGGAGGCGTCATCGTCGAGGGCAACGCGCTGGCCATGAACTTTTTCAAGTCTTACGGGTACATTACTTGT GCACACGCCATTTCCTTTCTCCAGGACCTCAAGATAGCTCATTATGTCAAGATCCCTCCCCGGGTCACCTTCATG GGCCAGATGGTAGCCACGCTGATCTCGACCACTGTCTGCACCGGTGTCTTCATGTTCCAGATGAACATCAAGGAC GTCTGCACCGCCTCAGCCCCCATGAGGTTCTTCTGCCCCGGTCCCAACACCTTCATGACGGCTTCCGTCCTCTGG GGCACCATCGGCCCCATAAAGGTATTCGGCAAGGAAGGCTACTACAAGTGGCTCCTGATGGGCTTCCCCGTCGGC TTCCTCCTCGTCTCCATCGTCTGGGCCCTGCAGAGGCGTTATCCAGACTCGGGCTTCCTTCGACGGATCAACGTC GTCGTCGCCATCGCCGGTTCGCTACAGTGGGCTCCCTATAGCTTCTCTTACGCGTGGCCGGCGCTGCCCGTCGCC TGGTACTCGTGGATCTACGTCCGCAGCCGCCATCTCAACTTCTGGTCACGATACAACTACGTTCTCTCGGCCTCG CTCTCGGCCGGCGTCGCCATCTCCGCCATAATCATGCTCTTCACCGTCCAGTGGGCCGGTATCAATGTCAACTGG TGGGGGAACTCTCAGCCGTTCAAGGGTTGCGAGGGTGAGCCTTGCCGGCTGTATAAGCTGGCTGAAGGGGAGAGG TTCTGA |
| Gene | >Ophcf2|01129 ATGCCGACTCGCAAGGTCAGAGTCGACGAAGACCAGGCTACGATGAAAGAGGCAATGGAGAACGGCCGAGGGAGC AACAAGGGCGACAAAGCCATCATCCTGGAGAAGATGGTGAGTCGTTTTTTTTGTTTTTCCAGTTGGGTGGTTCCG AACGCGCGGAACAGCTCTGACGGATGCCGTCTTTGTTCCGTAGCCCTCGGACGATGCCGAGACGACTGGTAGCCT CAAGTCGGGTCTCCCCCCCCCCTTTTTTTTTTTTTTATTTTTTTTTATATTTTGGCCATCTTGAGCGTCCGGCTC TGGCTGACTTGCTCGCGGGCAGACACCTCGATGCTACCGAGGATGATATTCTCGAGGCTAGGGAGTTGGCGGCCT CGATGAGCCTGGAGACGGTCCATGGAGTTGGTCTCGATGCCCCTTGAGCTTGGCAGCGTCTTGTATCTGACCTCG ATGGCTTAGATGATGAAGAAGGTGTTGGCAGACCACGAGAACGATCCCAACTTCAACCACGCCACTGTCGAGGTC ATCAAGACGTTTCTGTGTACGAGCCTCCTCCATCTCTGTTTTCGAAACCCCCCTTTGCCCCTGACAGTCCCAAAC CGGCGCAGCCGACCAAGATGTCCTCCTCAACCCGGAGAAGCACGAGCAACTCGTGGAGCGGATCAAGCTCGAAGC AGCCCTCATCGCGACCAACAGCCCCTACGCCGAGGTCCGAGCCAACGTCGACAACCACGACAAGGCCGACATGCC CGTCTCGACCATCCGGGCCTGGACGCTGGGCTGCCTCTTCAGCGTGCTCCTCTCCTTCGTCAACCAGCTCTTCTC GGTCCGGCAGCCGTCCATCAAGTTCGAGACCAACGTCGCCCAGTTGCTATCGTACCCGCTGGGAAAGTGCTGGGA GAGATGGATGCCCCGTTACGATGTGCCCATCCCCTTTACCGGCCGCAGCGTGAGCCTCAATCCGGGACCGTTTAA TAAGAAGGAGCATATGCTCATCGCCATCATGGCCAACACGTCCAAGAGCCTTCCGTACACCAACTTCATGATCTG GACGCAGGTGTTGCCCCAGGGCTTTAACCAGCAGTACGCTCGCAGCGCGGGATACATGTTCCTCAACGCCTTTGC TACCAATTTCATCGGTTACGGGTTGGCCGGCGTCATGCGTAAGATCCTCGTCAAGCCGGCTTATTGCATCTGGCC GACCGTCTTCTCGACCATTGCTCTCAACGCGGCACTGCATCCGGGGGCAGGGGATGAGACCAAGACGGTCAGAGG GCCGATGCGAACGACGTGGACCATGTCTCGTTACCGGTTCTTCCTCTACACCTTCTTCGCCATGCTCGTGTACTT TTGGTTCCCCAACTATCTGTTTCAGGCCTTGTCGTACTTTTCGTGGATGACGTGGATTGCGCCGGACAACCTGAC GCTGAACATCTTTACGGGGATGCAGAATGGGCTCGGGGTATGTTTTCGTCGTGTTTCCTCGAGTTGTCTCGGTGG AGAGTTGATGCTGATATCGGAGACAAGCTGTTCAACCCCTTTCCGACCTTTGACTGGAACTGCATGACCTACATC ACCGATCCTCTGGTCTGTCCTCTTCCGTTCGACGACTCGGATACCGTCTTCTCACTTACAAACGACAGATGCTCC CCTCCACCACAACCTTCAACGCCGTGGGCGGCATGTTCCTCACCGGCCTCCTGATCCCCATTGCTTGGTTCACAA ACACCTGGAACACGGGCTACCTGCCCATCCTCACGAATCGAGTGCACGATCACTTCGGTAAGCTGTACAACATCT CCAACACCCTCGACTCGCGCGGCATGTTCGACGCCGAAAAGTACGCCGAGTATTCGCGTCCTTACCTCGGGGCCG CCAACGCGTTGGCCTATGGCTGGCACTTTGCCATTTATACGGCCATTATAACGCACGTGCTGCTCTATCACAGGT CTCAGATGATGATGGGTTTCAAGAGCATCTTCAAGAGTCTTCGCTGTGCATTCTATAGGAGGAAGAAGAAGACGG ATCGGAGTGCCGGTGACGCCGTTCAGGAGGAGAGATACCCAGACGTCCACAACCGCCTGATGTCGGTATACGCAG AGAGTAAGCGTCCTTGTACTGACTGAAAAAAACCGACTTCAACGGGCTCGATACTAACACCAACATGTCATCCAG TTCCCGAATGGTGGTTCTGCCTCATCCTGGCCATCTCCATCTTACTGGGCATCCTCGGAATCGTCCTCTGGCCGA CCTACACCTCGCCCGCCGTCGTCCTCTACGGCATCCTTCTATGCCTTCTCTTCATCGTCCCCATCGGCGTGACGG TTAGCATGACGGGCATGGAGATTACGCTCAACGTGCTAGCCGAGTTCATTGGAGGCGTCATCGTCGAGGGCAACG CGCTGGCCATGAACTTTTTCAAGTCTTACGGGTACATTACTTGTGCACACGCCATTTCCTTTCTCCAGGACCTCA AGATAGCTCATTATGTCAAGGTATGTATAGTTAGTTGTCAGAGACAATCGTCATCAGAGCCGAAAGATGGCTGAC CCGAGCAGATCCCTCCCCGGGTCACCTTCATGGGCCAGATGGTAGCCACGCTGATCTCGACCACTGTCTGCACCG GTGTCTTCATGTTCCAGGTATGCCGTCTCTCTAGACTATAGAGTTGGGAGAGATCCTAGCTGAGCCCTGTAGATG AACATCAAGGACGTCTGCACCGCCTCAGCCCCCATGAGGTTCTTCTGCCCCGGTCCCAACACCTTCATGACGGCT TCCGTCCTCTGGGGCACCATCGGCCCCATAAAGGTATTCGGCAAGGAAGGCTACTACAAGTGGCTCCTGATGGGC TTCCCCGTCGGCTTCCTCCTCGTCTCCATCGTCTGGGCCCTGCAGAGGCGTTATCCAGACTCGGGCTTCCTTCGA CGGATCAACGTCGTCGTCGCCATCGCCGGTTCGCTACAGTGGGCTCCCTATAGCTTCTCTTACGCGTGGCCGGCG CTGCCCGTCGCCTGGTACTCGTGGATCTACGTCCGCAGCCGCCATCTCAACTTCTGGTCACGATACAACTACGTT CTCTCGGCCTCGCTCTCGGCCGGCGTCGCCATCTCCGCCATAATCATGCTCTTCACCGTCCAGTGGGCCGGTATC AATGTCAACTGGTGGGGGAACTCTCAGCCGTTCAAGGGTTGCGAGGGTGAGCCTTGCCGGCTGTATAAGCTGGCT GAAGGGGAGAGGTTCTGA |