Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|01108
Gene name
Location	scaffold_01:4081575..4082532
Strand	+
Gene length (bp)	957
Transcript length (bp)	900
Coding sequence length (bp)	900
Protein length (aa)	300

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	155	177	22
2	192	214	22
3	221	243	22
4	253	275	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	12.57	4.49	20.65
Alive	In ants, during behavior modification	13.46	4.92	22.01
Dead	In ants, recently dead	13.46	4.91	22.00

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.846613	no
Alive	Dead	0.998183	no
Dead	Fungus	0.848420	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|01108 MDDPNATIRPRRESKKKLRMKKNLSVPENQSLTSSPTFSAASSRSAAGAPTSPNSTMGDFWRLLPVGTNSRRNSS VAADGQRLRRAPSFMASTSSESAGQLATETPLTPFPPLKAAEPGSSTHRASLASPGQQDQNEVADGLYRYQWSLN TAMHGAVLFGQCVVTLAVLSGFLYTAIVDKSNVDPKGQEMPWKYAETALGLTLATCIGVLALHETRVLSTVAVLY LQALILAMTMMTSLALWIWIFTHSTSRIVTGAVVSGVAMLMGTAMLAFFRAALVWWIIEEGGELGGSGEEVFED*
Coding	>Ophcf2\|01108 ATGGACGACCCCAACGCAACGATTCGTCCCCGGCGAGAGAGTAAGAAGAAGCTGCGAATGAAGAAGAATCTCTCC GTGCCCGAGAATCAGTCGTTGACCTCGTCTCCTACTTTCTCAGCCGCTTCCTCGCGATCGGCTGCTGGTGCGCCC ACGTCTCCCAATTCCACCATGGGTGACTTCTGGCGTCTCCTCCCCGTTGGCACCAACTCGCGTCGGAATTCGAGC GTGGCGGCGGATGGCCAGCGCCTCAGACGAGCCCCCAGCTTCATGGCTTCCACGTCGTCCGAGTCGGCTGGACAG CTGGCTACCGAGACGCCGCTCACGCCTTTCCCGCCTCTGAAGGCTGCTGAGCCGGGCTCATCGACGCACCGTGCT TCGCTGGCTTCGCCTGGGCAGCAGGATCAGAACGAGGTTGCCGATGGATTGTACCGCTATCAATGGAGCCTCAAC ACGGCCATGCATGGCGCCGTCTTGTTTGGGCAGTGTGTCGTCACGTTGGCTGTCCTGAGCGGCTTTCTCTACACT GCCATCGTCGACAAGAGCAACGTGGACCCCAAGGGTCAGGAAATGCCATGGAAATACGCAGAGACGGCTCTCGGC CTCACCCTCGCTACCTGCATCGGCGTCCTCGCCCTCCACGAGACGCGCGTGCTGTCGACGGTGGCAGTGCTCTAC CTACAGGCGCTGATCCTCGCCATGACCATGATGACCTCGCTCGCCTTGTGGATCTGGATCTTCACGCACAGCACC AGCCGCATCGTCACGGGAGCAGTCGTCAGCGGCGTGGCCATGCTCATGGGCACCGCCATGTTGGCCTTTTTCAGG GCTGCTTTGGTCTGGTGGATTATCGAGGAAGGCGGCGAGCTGGGCGGCAGCGGCGAGGAGGTTTTCGAGGACTAG
Transcript	>Ophcf2\|01108 ATGGACGACCCCAACGCAACGATTCGTCCCCGGCGAGAGAGTAAGAAGAAGCTGCGAATGAAGAAGAATCTCTCC GTGCCCGAGAATCAGTCGTTGACCTCGTCTCCTACTTTCTCAGCCGCTTCCTCGCGATCGGCTGCTGGTGCGCCC ACGTCTCCCAATTCCACCATGGGTGACTTCTGGCGTCTCCTCCCCGTTGGCACCAACTCGCGTCGGAATTCGAGC GTGGCGGCGGATGGCCAGCGCCTCAGACGAGCCCCCAGCTTCATGGCTTCCACGTCGTCCGAGTCGGCTGGACAG CTGGCTACCGAGACGCCGCTCACGCCTTTCCCGCCTCTGAAGGCTGCTGAGCCGGGCTCATCGACGCACCGTGCT TCGCTGGCTTCGCCTGGGCAGCAGGATCAGAACGAGGTTGCCGATGGATTGTACCGCTATCAATGGAGCCTCAAC ACGGCCATGCATGGCGCCGTCTTGTTTGGGCAGTGTGTCGTCACGTTGGCTGTCCTGAGCGGCTTTCTCTACACT GCCATCGTCGACAAGAGCAACGTGGACCCCAAGGGTCAGGAAATGCCATGGAAATACGCAGAGACGGCTCTCGGC CTCACCCTCGCTACCTGCATCGGCGTCCTCGCCCTCCACGAGACGCGCGTGCTGTCGACGGTGGCAGTGCTCTAC CTACAGGCGCTGATCCTCGCCATGACCATGATGACCTCGCTCGCCTTGTGGATCTGGATCTTCACGCACAGCACC AGCCGCATCGTCACGGGAGCAGTCGTCAGCGGCGTGGCCATGCTCATGGGCACCGCCATGTTGGCCTTTTTCAGG GCTGCTTTGGTCTGGTGGATTATCGAGGAAGGCGGCGAGCTGGGCGGCAGCGGCGAGGAGGTTTTCGAGGACTAG
Gene	>Ophcf2\|01108 ATGGACGACCCCAACGCAACGATTCGTCCCCGGCGAGAGAGTAAGAAGAAGCTGCGAATGAAGAAGAATCTCTCC GTGCCCGAGAATCAGTCGTTGACCTCGTCTCCTACTTTCTCAGCCGCTTCCTCGCGATCGGCTGCTGGTGCGCCC ACGTCTCCCAATTCCACCATGGGTGACTTCTGGCGTCTCCTCCCCGTTGGCACCAACTCGCGTCGGAATTCGAGC GTGGCGGCGGATGGCCAGCGCCTCAGACGAGCCCCCAGCTTCATGGCTTCCACGTCGTCCGAGTCGGCTGGACAG CTGGCTACCGAGACGCCGCTCACGCCTTTCCCGCCTCTGAAGGCTGCTGAGCCGGGCTCATCGACGCACCGTGCT TCGCTGGCTTCGCCTGGGCAGCAGGATCAGAACGAGGTTGCCGATGGATTGTACCGCTATCAATGGAGCCTCAAC ACGGCCATGCATGGCGCCGTCTTGTTTGGGCAGTGTGTCGTCACGTTGGCTGTCCTGAGCGGCTTTCTCTACACT GCCATCGTCGACAAGAGCAACGTGGACCCCAAGGGTCAGGAAATGTGCGTGACCATCTTCCACCCCCCTTCCCAT CATCTCAATGCTGACCGATCTTGCAGGCCATGGAAATACGCAGAGACGGCTCTCGGCCTCACCCTCGCTACCTGC ATCGGCGTCCTCGCCCTCCACGAGACGCGCGTGCTGTCGACGGTGGCAGTGCTCTACCTACAGGCGCTGATCCTC GCCATGACCATGATGACCTCGCTCGCCTTGTGGATCTGGATCTTCACGCACAGCACCAGCCGCATCGTCACGGGA GCAGTCGTCAGCGGCGTGGCCATGCTCATGGGCACCGCCATGTTGGCCTTTTTCAGGGCTGCTTTGGTCTGGTGG ATTATCGAGGAAGGCGGCGAGCTGGGCGGCAGCGGCGAGGAGGTTTTCGAGGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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