© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01028 |
| Gene name | |
| Location | scaffold_01:3843064..3843965 |
| Strand | + |
| Gene length (bp) | 901 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1475 | 0.1444 | 0.0479 | 0.0399 | 0.9282 | 0.0374 | 0.0624 | 0.0223 | 0.0498 | 0.0164 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 65 | 87 | 22 |
| 2 | 97 | 119 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6385 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01028 MACLGPVSFRAMASRRLLRQLVSRLVRRSASTTSGAKLLAAKQQTFRIPAQVLIYHAGSGRTAFLGVVRLTSLFV AVFFVFLIGPAYIRAEKDVLSTAAMVAGGIIPLTLVTITSSPFVTQMHMHLPNSARLSRRTLERFVRDLPSETMV TLTTMNFYTAARAARLRAGDLRPAAGTARARLGLVNYVRRRPVAGLRGVNAFFVQPRGKALRPVDGVMRRDLVEG WIWEAVQSRISHSSRR* |
| Coding | >Ophcf2|01028 ATGGCTTGCCTCGGACCGGTCTCCTTTCGTGCCATGGCATCCCGTCGACTGCTACGACAGCTGGTGAGCCGTCTA GTGCGCCGATCAGCTTCCACCACCAGCGGTGCGAAGCTACTGGCGGCTAAGCAGCAGACGTTTCGTATACCGGCT CAGGTTCTCATCTACCACGCTGGATCAGGTCGAACGGCTTTTCTCGGCGTCGTTCGTCTTACGAGCCTATTCGTT GCCGTCTTTTTCGTCTTCCTTATAGGGCCGGCCTACATTCGAGCTGAGAAGGACGTGCTCTCAACCGCAGCCATG GTGGCAGGCGGCATCATCCCCCTCACCCTCGTCACAATAACATCCTCCCCCTTCGTAACGCAAATGCACATGCAC CTCCCCAACAGCGCGCGGCTCTCCCGGCGAACGCTAGAGCGATTCGTTCGGGACCTACCCAGCGAGACGATGGTG ACGCTCACGACGATGAATTTCTACACGGCGGCGAGGGCGGCGAGGTTACGCGCCGGGGATCTACGCCCTGCGGCG GGGACGGCGAGGGCGAGGCTCGGGCTCGTCAATTACGTGAGGAGGAGGCCTGTCGCCGGGCTGAGGGGGGTGAAT GCGTTCTTCGTGCAGCCTAGGGGTAAGGCTTTGAGGCCTGTTGATGGGGTGATGAGGAGGGATTTGGTCGAGGGT TGGATATGGGAAGCCGTGCAGTCTCGCATCTCGCATTCTTCAAGGCGGTAG |
| Transcript | >Ophcf2|01028 ATGGCTTGCCTCGGACCGGTCTCCTTTCGTGCCATGGCATCCCGTCGACTGCTACGACAGCTGGTGAGCCGTCTA GTGCGCCGATCAGCTTCCACCACCAGCGGTGCGAAGCTACTGGCGGCTAAGCAGCAGACGTTTCGTATACCGGCT CAGGTTCTCATCTACCACGCTGGATCAGGTCGAACGGCTTTTCTCGGCGTCGTTCGTCTTACGAGCCTATTCGTT GCCGTCTTTTTCGTCTTCCTTATAGGGCCGGCCTACATTCGAGCTGAGAAGGACGTGCTCTCAACCGCAGCCATG GTGGCAGGCGGCATCATCCCCCTCACCCTCGTCACAATAACATCCTCCCCCTTCGTAACGCAAATGCACATGCAC CTCCCCAACAGCGCGCGGCTCTCCCGGCGAACGCTAGAGCGATTCGTTCGGGACCTACCCAGCGAGACGATGGTG ACGCTCACGACGATGAATTTCTACACGGCGGCGAGGGCGGCGAGGTTACGCGCCGGGGATCTACGCCCTGCGGCG GGGACGGCGAGGGCGAGGCTCGGGCTCGTCAATTACGTGAGGAGGAGGCCTGTCGCCGGGCTGAGGGGGGTGAAT GCGTTCTTCGTGCAGCCTAGGGGTAAGGCTTTGAGGCCTGTTGATGGGGTGATGAGGAGGGATTTGGTCGAGGGT TGGATATGGGAAGCCGTGCAGTCTCGCATCTCGCATTCTTCAAGGCGGTAG |
| Gene | >Ophcf2|01028 ATGGCTTGCCTCGGACCGGTCTCCTTTCGTGCCATGGCATCCCGTCGACTGCTACGACAGCTGGTGAGCCGTCTA GTGCGCCGATCAGCTTCCACCACCAGCGGTGCGAAGCTACTGGCGGCTAAGCAGCAGACGTTTCGTGCGTTTATA TCAACAACCCGTGTGTCGAAACCGCGGATGAGGAGTTGATGAGAGCTGATGATGATGGGGGTGGATTGAATAGGT ATACCGGCTCAGGTTCTCATCTACCACGCTGGATCAGGTCGAACGGCTTTTCTCGGCGTCGTTCGTCTTACGAGC CTATTCGTTGCCGTCTTTTTCGTCTTCCTTATAGGGCCGGCCTACATTCGAGCTGAGAAGGACGTGCTCTCAACC GCAGCCAGTTCGTCCCATACCCAAGCCCTTTCAAGATGAAACGAAAAAAAAAAAAAAATTCAAAAAATTAATAGA AGAGTGCTGATGAGTAAAAGTAGTGGTGGCAGGCGGCATCATCCCCCTCACCCTCGTCACAATAACATCCTCCCC CTTCGTAACGCAAATGCACATGCACCTCCCCAACAGCGCGCGGCTCTCCCGGCGAACGCTAGAGCGATTCGTTCG GGACCTACCCAGCGAGACGATGGTGACGCTCACGACGATGAATTTCTACACGGCGGCGAGGGCGGCGAGGTTACG CGCCGGGGATCTACGCCCTGCGGCGGGGACGGCGAGGGCGAGGCTCGGGCTCGTCAATTACGTGAGGAGGAGGCC TGTCGCCGGGCTGAGGGGGGTGAATGCGTTCTTCGTGCAGCCTAGGGGTAAGGCTTTGAGGCCTGTTGATGGGGT GATGAGGAGGGATTTGGTCGAGGGTTGGATATGGGAAGCCGTGCAGTCTCGCATCTCGCATTCTTCAAGGCGGTA G |