© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|01026 |
| Gene name | |
| Location | scaffold_01:3835334..3837011 |
| Strand | - |
| Gene length (bp) | 1677 |
| Transcript length (bp) | 1677 |
| Coding sequence length (bp) | 1677 |
| Protein length (aa) | 559 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 1.7E-49 | 194 | 554 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1266 | 0.0908 | 0.0607 | 0.5447 | 0.0721 | 0.0752 | 0.5604 | 0.5861 | 0.6619 | 0.0533 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 119 | 141 | 22 |
| 2 | 193 | 215 | 22 |
| 3 | 227 | 249 | 22 |
| 4 | 264 | 286 | 22 |
| 5 | 403 | 425 | 22 |
| 6 | 429 | 451 | 22 |
| 7 | 464 | 486 | 22 |
| 8 | 496 | 518 | 22 |
| 9 | 538 | 557 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 53 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01026 MICLNKADEAFSRHLAFNQSPPALAPNRTTRQDLNGISNLRQYVAAGQDLGPDQDPFVGSSRARPDTDHHDSRPE PLAVEAGAPGPCCCASSSPASHQTGAGGEGRFRLSWLSSQPERLWTLTAWVLSLVLLVRVVPVVAAEIGRWRAAA PTSAPAPTPVPIPAPTPAPAPILKRATCRVGGLDHTVDYNTPLHVGALLIIWTVSTLGCSFPIMAAKLPWLRIPR RFFFAVRHFGTGVLIATAFVHLLPTAFVSLGNPCLGSFWTTQYQAMPGAIALASIFLVMVIEMMLHPSRHVPSSA SVIGHSSGSDAAASGSSGPSHHLCSSTAGLPFGDLMGSRSARSTTLALGLTQLKNSPVVEGAQEEVGHLPAVSEH KSETDVAVSTESRQTSPELARRKERLQCILLEMGILFHSVFIGMAVSVSVGADFVVLLIAIVFHQTFEGLALGAR ISAIEWGSKSWQPWCMALAYGCTTPLGQAIGLATHTLYSPDSEVGLIVVGVMNAISAGLLTFASLVELLSEDFLS DHSWRILRGRQRVIACVLVFFGAFFMSLVGAWA* |
| Coding | >Ophcf2|01026 ATGATCTGCCTCAACAAGGCCGACGAAGCCTTTTCACGCCATCTAGCCTTCAATCAGAGCCCTCCCGCCCTGGCC CCCAATCGAACAACCCGTCAGGACCTCAACGGCATCTCCAACCTGCGCCAGTACGTCGCCGCCGGTCAGGACCTC GGCCCGGATCAGGACCCCTTCGTCGGCTCGTCCCGGGCCCGACCCGATACCGATCACCATGATTCGCGCCCAGAG CCATTGGCCGTCGAGGCGGGCGCTCCGGGGCCGTGCTGCTGCGCCTCTTCGTCGCCGGCCTCGCACCAGACGGGA GCCGGCGGTGAGGGCCGCTTCCGTCTTTCCTGGCTGTCGTCGCAGCCGGAGCGGCTATGGACCCTGACCGCCTGG GTCCTGTCGCTCGTCCTGCTGGTCCGTGTCGTTCCGGTCGTGGCGGCAGAGATCGGCCGGTGGAGGGCCGCCGCT CCGACTTCGGCTCCGGCCCCGACTCCGGTCCCGATTCCGGCCCCGACTCCGGCTCCGGCTCCGATTCTCAAGCGA GCGACCTGTCGCGTCGGTGGCCTCGATCACACCGTCGACTACAACACGCCCCTTCACGTCGGCGCCCTGCTCATC ATCTGGACCGTCTCGACGCTCGGCTGCTCGTTCCCCATCATGGCCGCCAAGCTGCCCTGGCTTCGCATCCCGCGC CGCTTCTTCTTCGCCGTCCGTCACTTCGGCACCGGTGTCCTCATCGCCACCGCCTTCGTCCATCTGCTTCCCACC GCCTTCGTCTCTCTCGGAAACCCCTGCCTCGGTAGCTTCTGGACCACCCAGTATCAGGCCATGCCAGGTGCCATC GCCTTGGCCTCCATCTTTCTCGTCATGGTCATTGAGATGATGCTTCACCCTTCGCGCCACGTGCCCTCTTCCGCC TCCGTCATCGGCCACAGCTCCGGCTCCGATGCCGCCGCCTCTGGCTCCTCTGGCCCCTCTCACCATCTCTGCAGT AGCACCGCCGGCCTCCCTTTTGGCGATCTGATGGGCTCACGGAGCGCCCGCTCCACGACCTTGGCCCTCGGCCTG ACGCAGCTCAAGAACAGCCCCGTCGTCGAGGGCGCCCAAGAAGAAGTCGGTCACCTGCCCGCCGTCTCGGAGCAC AAGTCGGAGACAGACGTGGCCGTCTCGACCGAGAGCCGGCAGACCTCGCCCGAGCTGGCCCGTCGCAAGGAACGT CTCCAGTGTATCCTGCTCGAGATGGGCATCCTCTTCCACAGCGTCTTCATCGGCATGGCCGTCAGCGTCTCCGTC GGCGCCGACTTCGTCGTCCTGCTCATCGCCATCGTCTTCCACCAAACCTTCGAGGGCCTCGCCCTGGGAGCCCGC ATCTCGGCCATTGAATGGGGCTCCAAGAGCTGGCAGCCCTGGTGCATGGCCCTCGCCTACGGCTGCACCACTCCC CTTGGCCAGGCTATCGGTTTGGCCACTCACACCCTCTACAGCCCGGACTCCGAGGTTGGGCTCATCGTCGTCGGC GTCATGAATGCCATCTCAGCCGGTCTCTTGACCTTTGCCTCGCTCGTCGAGCTGCTATCTGAAGATTTTCTCAGC GACCACAGCTGGCGCATCTTGCGAGGGAGGCAACGCGTCATTGCCTGCGTCCTCGTCTTCTTTGGCGCCTTTTTT ATGAGTCTAGTCGGTGCCTGGGCGTAG |
| Transcript | >Ophcf2|01026 ATGATCTGCCTCAACAAGGCCGACGAAGCCTTTTCACGCCATCTAGCCTTCAATCAGAGCCCTCCCGCCCTGGCC CCCAATCGAACAACCCGTCAGGACCTCAACGGCATCTCCAACCTGCGCCAGTACGTCGCCGCCGGTCAGGACCTC GGCCCGGATCAGGACCCCTTCGTCGGCTCGTCCCGGGCCCGACCCGATACCGATCACCATGATTCGCGCCCAGAG CCATTGGCCGTCGAGGCGGGCGCTCCGGGGCCGTGCTGCTGCGCCTCTTCGTCGCCGGCCTCGCACCAGACGGGA GCCGGCGGTGAGGGCCGCTTCCGTCTTTCCTGGCTGTCGTCGCAGCCGGAGCGGCTATGGACCCTGACCGCCTGG GTCCTGTCGCTCGTCCTGCTGGTCCGTGTCGTTCCGGTCGTGGCGGCAGAGATCGGCCGGTGGAGGGCCGCCGCT CCGACTTCGGCTCCGGCCCCGACTCCGGTCCCGATTCCGGCCCCGACTCCGGCTCCGGCTCCGATTCTCAAGCGA GCGACCTGTCGCGTCGGTGGCCTCGATCACACCGTCGACTACAACACGCCCCTTCACGTCGGCGCCCTGCTCATC ATCTGGACCGTCTCGACGCTCGGCTGCTCGTTCCCCATCATGGCCGCCAAGCTGCCCTGGCTTCGCATCCCGCGC CGCTTCTTCTTCGCCGTCCGTCACTTCGGCACCGGTGTCCTCATCGCCACCGCCTTCGTCCATCTGCTTCCCACC GCCTTCGTCTCTCTCGGAAACCCCTGCCTCGGTAGCTTCTGGACCACCCAGTATCAGGCCATGCCAGGTGCCATC GCCTTGGCCTCCATCTTTCTCGTCATGGTCATTGAGATGATGCTTCACCCTTCGCGCCACGTGCCCTCTTCCGCC TCCGTCATCGGCCACAGCTCCGGCTCCGATGCCGCCGCCTCTGGCTCCTCTGGCCCCTCTCACCATCTCTGCAGT AGCACCGCCGGCCTCCCTTTTGGCGATCTGATGGGCTCACGGAGCGCCCGCTCCACGACCTTGGCCCTCGGCCTG ACGCAGCTCAAGAACAGCCCCGTCGTCGAGGGCGCCCAAGAAGAAGTCGGTCACCTGCCCGCCGTCTCGGAGCAC AAGTCGGAGACAGACGTGGCCGTCTCGACCGAGAGCCGGCAGACCTCGCCCGAGCTGGCCCGTCGCAAGGAACGT CTCCAGTGTATCCTGCTCGAGATGGGCATCCTCTTCCACAGCGTCTTCATCGGCATGGCCGTCAGCGTCTCCGTC GGCGCCGACTTCGTCGTCCTGCTCATCGCCATCGTCTTCCACCAAACCTTCGAGGGCCTCGCCCTGGGAGCCCGC ATCTCGGCCATTGAATGGGGCTCCAAGAGCTGGCAGCCCTGGTGCATGGCCCTCGCCTACGGCTGCACCACTCCC CTTGGCCAGGCTATCGGTTTGGCCACTCACACCCTCTACAGCCCGGACTCCGAGGTTGGGCTCATCGTCGTCGGC GTCATGAATGCCATCTCAGCCGGTCTCTTGACCTTTGCCTCGCTCGTCGAGCTGCTATCTGAAGATTTTCTCAGC GACCACAGCTGGCGCATCTTGCGAGGGAGGCAACGCGTCATTGCCTGCGTCCTCGTCTTCTTTGGCGCCTTTTTT ATGAGTCTAGTCGGTGCCTGGGCGTAG |
| Gene | >Ophcf2|01026 ATGATCTGCCTCAACAAGGCCGACGAAGCCTTTTCACGCCATCTAGCCTTCAATCAGAGCCCTCCCGCCCTGGCC CCCAATCGAACAACCCGTCAGGACCTCAACGGCATCTCCAACCTGCGCCAGTACGTCGCCGCCGGTCAGGACCTC GGCCCGGATCAGGACCCCTTCGTCGGCTCGTCCCGGGCCCGACCCGATACCGATCACCATGATTCGCGCCCAGAG CCATTGGCCGTCGAGGCGGGCGCTCCGGGGCCGTGCTGCTGCGCCTCTTCGTCGCCGGCCTCGCACCAGACGGGA GCCGGCGGTGAGGGCCGCTTCCGTCTTTCCTGGCTGTCGTCGCAGCCGGAGCGGCTATGGACCCTGACCGCCTGG GTCCTGTCGCTCGTCCTGCTGGTCCGTGTCGTTCCGGTCGTGGCGGCAGAGATCGGCCGGTGGAGGGCCGCCGCT CCGACTTCGGCTCCGGCCCCGACTCCGGTCCCGATTCCGGCCCCGACTCCGGCTCCGGCTCCGATTCTCAAGCGA GCGACCTGTCGCGTCGGTGGCCTCGATCACACCGTCGACTACAACACGCCCCTTCACGTCGGCGCCCTGCTCATC ATCTGGACCGTCTCGACGCTCGGCTGCTCGTTCCCCATCATGGCCGCCAAGCTGCCCTGGCTTCGCATCCCGCGC CGCTTCTTCTTCGCCGTCCGTCACTTCGGCACCGGTGTCCTCATCGCCACCGCCTTCGTCCATCTGCTTCCCACC GCCTTCGTCTCTCTCGGAAACCCCTGCCTCGGTAGCTTCTGGACCACCCAGTATCAGGCCATGCCAGGTGCCATC GCCTTGGCCTCCATCTTTCTCGTCATGGTCATTGAGATGATGCTTCACCCTTCGCGCCACGTGCCCTCTTCCGCC TCCGTCATCGGCCACAGCTCCGGCTCCGATGCCGCCGCCTCTGGCTCCTCTGGCCCCTCTCACCATCTCTGCAGT AGCACCGCCGGCCTCCCTTTTGGCGATCTGATGGGCTCACGGAGCGCCCGCTCCACGACCTTGGCCCTCGGCCTG ACGCAGCTCAAGAACAGCCCCGTCGTCGAGGGCGCCCAAGAAGAAGTCGGTCACCTGCCCGCCGTCTCGGAGCAC AAGTCGGAGACAGACGTGGCCGTCTCGACCGAGAGCCGGCAGACCTCGCCCGAGCTGGCCCGTCGCAAGGAACGT CTCCAGTGTATCCTGCTCGAGATGGGCATCCTCTTCCACAGCGTCTTCATCGGCATGGCCGTCAGCGTCTCCGTC GGCGCCGACTTCGTCGTCCTGCTCATCGCCATCGTCTTCCACCAAACCTTCGAGGGCCTCGCCCTGGGAGCCCGC ATCTCGGCCATTGAATGGGGCTCCAAGAGCTGGCAGCCCTGGTGCATGGCCCTCGCCTACGGCTGCACCACTCCC CTTGGCCAGGCTATCGGTTTGGCCACTCACACCCTCTACAGCCCGGACTCCGAGGTTGGGCTCATCGTCGTCGGC GTCATGAATGCCATCTCAGCCGGTCTCTTGACCTTTGCCTCGCTCGTCGAGCTGCTATCTGAAGATTTTCTCAGC GACCACAGCTGGCGCATCTTGCGAGGGAGGCAACGCGTCATTGCCTGCGTCCTCGTCTTCTTTGGCGCCTTTTTT ATGAGTCTAGTCGGTGCCTGGGCGTAG |