© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|01010 |
| Gene name | |
| Location | scaffold_01:3804494..3805830 |
| Strand | + |
| Gene length (bp) | 1336 |
| Transcript length (bp) | 1167 |
| Coding sequence length (bp) | 1167 |
| Protein length (aa) | 389 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.0695 | 0.1238 | 0.0309 | 0.3371 | 0.1525 | 0.0281 | 0.658 | 0.4128 | 0.8819 | 0.0698 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 66 | 22 |
| 2 | 73 | 92 | 19 |
| 3 | 112 | 134 | 22 |
| 4 | 155 | 177 | 22 |
| 5 | 199 | 221 | 22 |
| 6 | 242 | 261 | 19 |
| 7 | 281 | 303 | 22 |
| 8 | 310 | 329 | 19 |
| 9 | 333 | 355 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 124.83 | 70.98 | 178.68 |
| Alive | In ants, during behavior modification | 170.72 | 93.70 | 247.74 |
| Dead | In ants, recently dead | 182.54 | 100.15 | 264.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.106626 | no |
| Alive | Dead | 0.747866 | no |
| Dead | Fungus | 0.045713 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 4811 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|01010 MSDKKSDDFVVRVPEISLSRADEKLPLAADGRSMSMLSSVESSGGISVAAYCLSSISMTLVNKYVVSGNQWNLHL LYLAIQSVVGTVTILVCKQAGLIKDLDPFDTRRAKKWFPISLLLVGMIFTGNKALQFLSVPVYTIFKNLTIIVIA YGEMLWFGGSVSPLSLVSFVLMVSSSMLAAWADFHSVRTDSSGAAHRAATAAATATLSTGYAWMGLNVMCSALYV LSMRKAIKITNLKNWDVMFYNNLLTIPVLVLSSLMIEDWSGANLARNFPPATRQNLMVGMVYSGLAAIFISYCTA WCIRATSSTTYAMAGALNKLPMAVAGLVFFSDPVTFGSVSAIFLGFVSGLIYTWAKNRKSRQAGLPTAVSRAASG TLSPHEKAEAAKD* |
| Coding | >Ophcf2|01010 ATGTCGGATAAGAAGAGCGACGATTTCGTCGTTCGCGTGCCGGAAATCAGCCTTTCGCGCGCCGACGAGAAGCTG CCGCTGGCTGCCGATGGCCGGTCCATGTCGATGCTTTCGTCGGTTGAGAGCAGCGGCGGCATCTCCGTCGCTGCC TACTGCCTGTCGTCCATCAGCATGACGCTCGTCAACAAGTACGTCGTGTCGGGGAACCAGTGGAATCTGCATCTG CTGTACCTGGCCATCCAGTCTGTCGTTGGTACTGTCACTATCCTCGTCTGCAAGCAGGCCGGCCTCATCAAGGAT CTCGACCCCTTTGACACGAGGAGAGCCAAAAAGTGGTTCCCCATCTCGCTGCTGCTAGTCGGCATGATCTTCACG GGCAACAAGGCGCTGCAGTTTCTGTCAGTGCCCGTCTACACCATCTTCAAGAACCTGACCATCATCGTCATCGCA TACGGGGAGATGCTGTGGTTCGGCGGCAGCGTCAGCCCGCTGAGCCTCGTCTCCTTTGTGTTGATGGTCTCGAGC TCGATGCTGGCGGCCTGGGCCGACTTTCACAGCGTCCGGACCGATTCTTCGGGCGCTGCTCACAGGGCCGCCACT GCCGCCGCCACGGCGACGCTGAGCACGGGCTACGCCTGGATGGGCCTCAACGTCATGTGCTCGGCGCTGTACGTT CTGAGTATGCGCAAGGCCATCAAGATAACCAACCTCAAGAACTGGGACGTCATGTTCTACAACAACCTGCTGACC ATTCCGGTCCTGGTCCTCTCGTCTCTCATGATAGAGGACTGGTCCGGCGCCAACCTGGCGCGCAACTTCCCCCCG GCGACGCGCCAGAACCTGATGGTCGGCATGGTCTACTCGGGCCTGGCTGCCATCTTCATCTCGTACTGCACGGCC TGGTGCATCCGCGCCACATCGTCGACGACGTACGCCATGGCCGGCGCCCTCAACAAGCTGCCCATGGCCGTCGCC GGCCTCGTCTTCTTCTCCGACCCCGTCACGTTCGGCAGCGTGTCGGCCATCTTCCTCGGCTTCGTCAGCGGTCTC ATCTACACGTGGGCCAAGAACAGAAAGTCGCGACAGGCCGGTCTGCCGACGGCCGTCAGCCGCGCGGCGTCGGGG ACGCTGTCGCCGCATGAAAAGGCCGAGGCAGCCAAGGACTGA |
| Transcript | >Ophcf2|01010 ATGTCGGATAAGAAGAGCGACGATTTCGTCGTTCGCGTGCCGGAAATCAGCCTTTCGCGCGCCGACGAGAAGCTG CCGCTGGCTGCCGATGGCCGGTCCATGTCGATGCTTTCGTCGGTTGAGAGCAGCGGCGGCATCTCCGTCGCTGCC TACTGCCTGTCGTCCATCAGCATGACGCTCGTCAACAAGTACGTCGTGTCGGGGAACCAGTGGAATCTGCATCTG CTGTACCTGGCCATCCAGTCTGTCGTTGGTACTGTCACTATCCTCGTCTGCAAGCAGGCCGGCCTCATCAAGGAT CTCGACCCCTTTGACACGAGGAGAGCCAAAAAGTGGTTCCCCATCTCGCTGCTGCTAGTCGGCATGATCTTCACG GGCAACAAGGCGCTGCAGTTTCTGTCAGTGCCCGTCTACACCATCTTCAAGAACCTGACCATCATCGTCATCGCA TACGGGGAGATGCTGTGGTTCGGCGGCAGCGTCAGCCCGCTGAGCCTCGTCTCCTTTGTGTTGATGGTCTCGAGC TCGATGCTGGCGGCCTGGGCCGACTTTCACAGCGTCCGGACCGATTCTTCGGGCGCTGCTCACAGGGCCGCCACT GCCGCCGCCACGGCGACGCTGAGCACGGGCTACGCCTGGATGGGCCTCAACGTCATGTGCTCGGCGCTGTACGTT CTGAGTATGCGCAAGGCCATCAAGATAACCAACCTCAAGAACTGGGACGTCATGTTCTACAACAACCTGCTGACC ATTCCGGTCCTGGTCCTCTCGTCTCTCATGATAGAGGACTGGTCCGGCGCCAACCTGGCGCGCAACTTCCCCCCG GCGACGCGCCAGAACCTGATGGTCGGCATGGTCTACTCGGGCCTGGCTGCCATCTTCATCTCGTACTGCACGGCC TGGTGCATCCGCGCCACATCGTCGACGACGTACGCCATGGCCGGCGCCCTCAACAAGCTGCCCATGGCCGTCGCC GGCCTCGTCTTCTTCTCCGACCCCGTCACGTTCGGCAGCGTGTCGGCCATCTTCCTCGGCTTCGTCAGCGGTCTC ATCTACACGTGGGCCAAGAACAGAAAGTCGCGACAGGCCGGTCTGCCGACGGCCGTCAGCCGCGCGGCGTCGGGG ACGCTGTCGCCGCATGAAAAGGCCGAGGCAGCCAAGGACTGA |
| Gene | >Ophcf2|01010 ATGTCGGATAAGAAGAGCGACGATTTCGTCGTTCGCGTGCCGGAAATCAGCCTTTCGCGCGCCGACGAGAAGCTG CCGCTGGCTGCCGATGGCCGGTCCATGTCGATGCTTTCGTCGGTTGAGAGCAGCGGCGGCATCTCCGTCGCTGCC TACTGCCTGTCGTCCATCAGCATGACGCTCGTCAACAAGTACGTCGTGTCGGGGAACCAGTGGAATCTGCATCTG CTGTACCTGGCCATCCAGGTGAGTTGTCCGGCTCCCATCGCTGGCCCACGCTGGCTAACGCCTTGCGCTTTTCAG TCTGTCGTTGGTACTGTCACTATCCTCGTCTGCAAGCAGGCCGGCCTCATCAAGGATCTCGACCCCTTTGACACG AGGAGAGCCAAAAAGTGTAGGCATCAATGATTCGCCCTTTTCGATCCCTCGATCCCCCGCTGACCCGGAACGCAG GGTTCCCCATCTCGCTGCTGCTAGTCGGCATGATCTTCACGGGCAACAAGGCGCTGCAGTTTCTGTCAGTGCCCG TCTACACCATCTTCAAGAACCTGACCATCATCGTCATCGCATACGGGGAGATGCTGTGGTTCGGCGGCAGCGTCA GCCCGCTGAGCCTCGTCTCCTTTGTGTTGATGGTCTCGAGCTCGATGCTGGCGGCCTGGGCCGACTTTCACAGCG TCCGGACCGATTCTTCGGGCGCTGCTCACAGGGCCGCCACTGCCGCCGCCACGGCGACGCTGAGCACGGGCTACG CCTGGATGGGCCTCAACGTCATGTGCTCGGCGCTGTACGTTCTGAGTATGCGCAAGGCCATCAAGATAACCAACC TCAAGAACTGGGACGGTAAGCCGGGCCCGCCCTGGTGGACGGCTGCGCGCTGACGACGGAGAATATAGTCATGTT CTACAACAACCTGCTGACCATTCCGGTCCTGGTCCTCTCGTCTCTCATGATAGAGGACTGGTCCGGCGCCAACCT GGCGCGCAACTTCCCCCCGGCGACGCGCCAGAACCTGATGGTCGGCATGGTCTACTCGGGCCTGGCTGCCATCTT CATCTCGTACTGCACGGCCTGGTGCATCCGCGCCACATCGTCGACGACGTACGCCATGGCCGGCGCCCTCAACAA GCTGCCCATGGCCGTCGCCGGCCTCGTCTTCTTCTCCGACCCCGTCACGTTCGGCAGCGTGTCGGCCATCTTCCT CGGCTTCGTCAGCGGTCTCATCTACACGTGGGCCAAGAACAGAAAGTCGCGACAGGCCGGTCTGCCGACGGCCGT CAGCCGCGCGGCGTCGGGGACGCTGTCGCCGCATGAAAAGGCCGAGGCAGCCAAGGACTGA |