© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00993 |
| Gene name | |
| Location | scaffold_01:3759437..3760632 |
| Strand | + |
| Gene length (bp) | 1195 |
| Transcript length (bp) | 975 |
| Coding sequence length (bp) | 975 |
| Protein length (aa) | 325 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.5E-14 | 73 | 141 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 301 | 323 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 61.11 | 33.42 | 88.80 |
| Alive | In ants, during behavior modification | 122.32 | 70.07 | 174.56 |
| Dead | In ants, recently dead | 126.26 | 72.42 | 180.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.876312 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00993 MASRSYRSVTRSPTPPPVDSRSGHRRRLGSPSQSRSPTPPPRRPRADSRSWSRGRARDSREPSETSHPSGTKVVV ERLSKNVRESHLREIFGHYGPIQDLDLPFNRAFGTNRGTAYILYEHREDAEEAVANMHEGHIDGATVNVSIVLPR RIFSPEPPLARRGANIDPRVPMPNSRGGRGYRGHPAPVGHRRASSPSRYGHRTNNAFAPPSRSRSRSPYRTPPKP SRASRGGGGPRRSFDSYSSRSRSKSPPPRRSGGGSGGRFANDGFRRRSRSVDSYGGGGRNRSPSPVRNNYWFHKG LLVFFIGMAACGCLSVQATCVYTG* |
| Coding | >Ophcf2|00993 ATGGCTTCGCGCTCGTACCGCTCCGTGACGCGCTCGCCGACGCCGCCGCCCGTCGATTCTCGCTCTGGTCACCGG CGTCGGCTCGGCTCACCCTCGCAGTCGCGTTCGCCGACGCCTCCTCCGCGTCGTCCCCGAGCCGACAGCCGGAGC TGGAGCCGCGGCCGAGCGAGGGACAGCCGTGAGCCGAGCGAGACTTCGCATCCGTCTGGGACCAAGGTTGTGGTC GAGCGGCTGTCGAAGAACGTGCGGGAGTCTCATCTTCGCGAGATTTTCGGTCATTACGGCCCGATTCAGGATCTC GACCTCCCCTTCAATAGAGCTTTTGGTACGAACCGCGGCACCGCCTATATCCTCTACGAGCATCGCGAAGACGCC GAGGAGGCCGTCGCCAACATGCACGAGGGCCACATCGACGGCGCCACCGTCAACGTCTCCATCGTCCTGCCGCGA CGCATCTTCTCGCCCGAACCACCTCTGGCCCGACGAGGCGCCAATATCGATCCTCGCGTTCCGATGCCCAACTCA CGCGGCGGGCGTGGCTACCGCGGCCATCCTGCGCCTGTTGGTCATCGTCGAGCCTCCTCTCCCAGCCGCTACGGT CATCGGACAAACAACGCCTTTGCGCCTCCCTCGCGCTCCCGCTCCCGTTCACCTTATAGGACGCCTCCGAAGCCG TCTCGTGCTTCTCGCGGTGGTGGCGGGCCGCGCCGCTCGTTTGACTCTTATTCGTCCCGCTCAAGGTCCAAGTCG CCTCCCCCGCGGCGGAGCGGAGGAGGAAGTGGCGGACGCTTTGCCAATGATGGCTTCCGTCGCCGCAGCCGTAGC GTCGACAGTTACGGAGGTGGAGGCCGCAACCGATCCCCCAGCCCGGTGCGGAACAACTACTGGTTTCATAAGGGC CTTTTGGTCTTTTTCATTGGGATGGCGGCGTGCGGTTGCCTATCCGTACAGGCCACGTGTGTATATACGGGTTGA |
| Transcript | >Ophcf2|00993 ATGGCTTCGCGCTCGTACCGCTCCGTGACGCGCTCGCCGACGCCGCCGCCCGTCGATTCTCGCTCTGGTCACCGG CGTCGGCTCGGCTCACCCTCGCAGTCGCGTTCGCCGACGCCTCCTCCGCGTCGTCCCCGAGCCGACAGCCGGAGC TGGAGCCGCGGCCGAGCGAGGGACAGCCGTGAGCCGAGCGAGACTTCGCATCCGTCTGGGACCAAGGTTGTGGTC GAGCGGCTGTCGAAGAACGTGCGGGAGTCTCATCTTCGCGAGATTTTCGGTCATTACGGCCCGATTCAGGATCTC GACCTCCCCTTCAATAGAGCTTTTGGTACGAACCGCGGCACCGCCTATATCCTCTACGAGCATCGCGAAGACGCC GAGGAGGCCGTCGCCAACATGCACGAGGGCCACATCGACGGCGCCACCGTCAACGTCTCCATCGTCCTGCCGCGA CGCATCTTCTCGCCCGAACCACCTCTGGCCCGACGAGGCGCCAATATCGATCCTCGCGTTCCGATGCCCAACTCA CGCGGCGGGCGTGGCTACCGCGGCCATCCTGCGCCTGTTGGTCATCGTCGAGCCTCCTCTCCCAGCCGCTACGGT CATCGGACAAACAACGCCTTTGCGCCTCCCTCGCGCTCCCGCTCCCGTTCACCTTATAGGACGCCTCCGAAGCCG TCTCGTGCTTCTCGCGGTGGTGGCGGGCCGCGCCGCTCGTTTGACTCTTATTCGTCCCGCTCAAGGTCCAAGTCG CCTCCCCCGCGGCGGAGCGGAGGAGGAAGTGGCGGACGCTTTGCCAATGATGGCTTCCGTCGCCGCAGCCGTAGC GTCGACAGTTACGGAGGTGGAGGCCGCAACCGATCCCCCAGCCCGGTGCGGAACAACTACTGGTTTCATAAGGGC CTTTTGGTCTTTTTCATTGGGATGGCGGCGTGCGGTTGCCTATCCGTACAGGCCACGTGTGTATATACGGGTTGA |
| Gene | >Ophcf2|00993 ATGGCTTCGCGCTCGTACCGCTCCGTGACGCGCTCGCCGACGCCGCCGCCCGTCGATTCTCGCTCTGGTCACCGG CGTCGGCTCGGCTCACCCTCGCAGTCGCGTTCGCCGACGCCTCCTCCGCGTCGTCCCCGAGCCGACAGCCGGAGC TGGAGCCGCGGCCGAGCGAGGGACAGCCGTGAGCCGAGCGAGACTTCGCATCCGTCTGGGACCAAGGTTCGTCTT ATCTTCTCGTCTGTCTGCTTGCTCACTGCTGATGCATCTCAGGTTGTGGTCGAGCGGCTGTCGAAGAACGTGCGG GAGTCTCATCTTCGCGAGATTTTCGGTCATTACGGCCCGATTCAGGATCTCGACCTCCCCTTCAATAGAGCTTGT GAGCTTATTCTTTTCCATACTCACATACTCGACGACAGATTCTGACGATTATTACCAGTTGGTACGAACCGCGGC ACCGCCTATATCCTCTACGAGCATCGCGAAGACGCCGAGGAGGCCGTCGCCAACATGCACGAGGGCCACATCGAC GGCGCCACCGTCAACGTCTCCATCGTCCTGCCGCGACGCATCTTCTCGCCCGAACCACCTCTGGCCCGACGAGGC GCCAATATCGATCCTCGCGTTCCGATGCCCAACTCACGCGGCGGGCGTGGCTACCGCGGCCATCCTGCGCCTGTT GGTCATCGTCGAGCCTCCTCTCCCAGCCGCTACGGTCATCGGACAAACAACGCCTTTGCGCCTCCCTCGCGCTCC CGCTCCCGTTCACCTTATAGGACGCCTCCGAAGCCGTCTCGTGCTTCTCGCGGTGGTGGCGGGCCGCGCCGCTCG TTTGACTCTTATTCGTCCCGCTCAAGGTCCAAGTCGCCTCCCCCGCGGCGGAGCGGAGGAGGAAGTGGCGGACGC TTTGCCAATGATGGCTTCCGTCGCCGCAGCCGTAGCGTCGACAGTTACGGAGGTGGAGGCCGCAACCGATCCCCC AGCCCGGTGCGGAACAACTACTGGTAGCGACACACCAGGGATTCAATCAAGGTCAGATATGAGCCTTGTCATCCT AGGTTTCATAAGGGCCTTTTGGTCTTTTTCATTGGGATGGCGGCGTGCGGTTGGTACGAATGATTTCTATTTCTT TCGCAGAGGGGCACGTTTTCTAACACGCCACAGCCTATCCGTACAGGCCACGTGTGTATATACGGGTTGA |