© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00992 |
| Gene name | |
| Location | scaffold_01:3757242..3758591 |
| Strand | + |
| Gene length (bp) | 1349 |
| Transcript length (bp) | 1212 |
| Coding sequence length (bp) | 1212 |
| Protein length (aa) | 404 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 2.1E-29 | 102 | 384 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 3.55 | 0.79 | 6.31 |
| Alive | In ants, during behavior modification | 187.24 | 96.82 | 277.65 |
| Dead | In ants, recently dead | 192.78 | 99.83 | 285.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.896834 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00992 MSREALYLGLSIATTCCLAYSVIQHFSVRVAGPTLVRSPWQMLILVIVLYFARSRHHELRQMRLRGAAPGKIYPH RDPIFGIDWFRLVLRAQANDKLIQIWHSLLTEKIGKTFWVNAMGNWLLMTCEPENVRAILQGQFKSWPIEGPRKR TTIAVIGSKSIFSSNGSQWAHARAMMRPTFVRNQIADLECLDRHADNFLARLRLEGSRIDLQHLFYLFTMDTSTD FMFGRSTEMLLRPSDDAVEFTEAFDYALRASTNRGRAGWLAFMMPDKKFDASVAIFRAFIDRYIAAALKEDRPKE RSYVFMHELIDSGATHQEISDQLLSMILGGRDTSASTLSSLFWMLARRPDVVRAIRNEVLQLQGKRPTWEQLKEL KYLNNALKEGEFTNTHCMSLTWSTQSVG* |
| Coding | >Ophcf2|00992 ATGTCTCGGGAAGCACTGTATCTCGGTCTTTCCATCGCTACGACTTGCTGTCTGGCCTACTCCGTGATCCAACAC TTTTCCGTCCGCGTGGCCGGTCCGACTCTTGTACGTTCGCCATGGCAGATGCTAATTCTCGTCATCGTCCTGTAC TTCGCTCGCTCTCGCCATCATGAGCTGCGTCAGATGCGTCTCCGGGGCGCGGCACCCGGCAAGATATATCCTCAT CGCGATCCGATCTTTGGCATCGACTGGTTCCGGCTCGTGCTCCGGGCTCAGGCCAATGACAAGTTGATACAGATC TGGCACAGCCTCTTGACCGAGAAGATTGGCAAGACCTTTTGGGTAAACGCCATGGGCAACTGGCTTCTCATGACT TGCGAGCCAGAAAACGTCCGAGCCATCCTGCAGGGCCAATTCAAGTCGTGGCCCATCGAGGGCCCGCGGAAACGG ACCACGATAGCCGTCATCGGATCCAAGTCCATCTTCAGTAGCAACGGGTCTCAATGGGCTCACGCTCGTGCCATG ATGCGTCCGACCTTTGTTCGAAACCAGATCGCTGACCTCGAATGCCTGGACCGCCATGCCGACAACTTTCTGGCC CGTCTGCGGCTAGAGGGTTCCAGGATTGATCTTCAGCATCTCTTTTACTTGTTCACCATGGACACGTCGACCGAT TTCATGTTCGGTCGCTCGACTGAGATGCTGCTACGGCCATCGGACGATGCCGTCGAGTTCACAGAGGCCTTTGAC TATGCCTTACGGGCCAGCACCAACCGCGGCCGTGCAGGTTGGCTGGCGTTCATGATGCCAGATAAGAAATTTGAT GCCTCCGTTGCCATCTTTCGAGCCTTCATCGATCGTTATATCGCTGCGGCTCTCAAGGAGGATAGGCCAAAGGAG AGATCCTACGTATTCATGCACGAGCTGATCGATTCGGGCGCCACCCATCAAGAGATCTCGGATCAGCTTCTATCC ATGATTCTCGGCGGTCGTGACACGAGCGCAAGCACCCTCAGCTCCTTGTTCTGGATGCTGGCCCGTCGGCCTGAT GTGGTGCGTGCCATCCGGAACGAAGTACTCCAACTGCAGGGAAAGCGTCCGACATGGGAGCAGCTCAAGGAGCTC AAGTACTTGAACAACGCGCTCAAGGAAGGCGAGTTTACGAATACTCACTGCATGAGCCTCACTTGGAGCACGCAG TCAGTCGGCTGA |
| Transcript | >Ophcf2|00992 ATGTCTCGGGAAGCACTGTATCTCGGTCTTTCCATCGCTACGACTTGCTGTCTGGCCTACTCCGTGATCCAACAC TTTTCCGTCCGCGTGGCCGGTCCGACTCTTGTACGTTCGCCATGGCAGATGCTAATTCTCGTCATCGTCCTGTAC TTCGCTCGCTCTCGCCATCATGAGCTGCGTCAGATGCGTCTCCGGGGCGCGGCACCCGGCAAGATATATCCTCAT CGCGATCCGATCTTTGGCATCGACTGGTTCCGGCTCGTGCTCCGGGCTCAGGCCAATGACAAGTTGATACAGATC TGGCACAGCCTCTTGACCGAGAAGATTGGCAAGACCTTTTGGGTAAACGCCATGGGCAACTGGCTTCTCATGACT TGCGAGCCAGAAAACGTCCGAGCCATCCTGCAGGGCCAATTCAAGTCGTGGCCCATCGAGGGCCCGCGGAAACGG ACCACGATAGCCGTCATCGGATCCAAGTCCATCTTCAGTAGCAACGGGTCTCAATGGGCTCACGCTCGTGCCATG ATGCGTCCGACCTTTGTTCGAAACCAGATCGCTGACCTCGAATGCCTGGACCGCCATGCCGACAACTTTCTGGCC CGTCTGCGGCTAGAGGGTTCCAGGATTGATCTTCAGCATCTCTTTTACTTGTTCACCATGGACACGTCGACCGAT TTCATGTTCGGTCGCTCGACTGAGATGCTGCTACGGCCATCGGACGATGCCGTCGAGTTCACAGAGGCCTTTGAC TATGCCTTACGGGCCAGCACCAACCGCGGCCGTGCAGGTTGGCTGGCGTTCATGATGCCAGATAAGAAATTTGAT GCCTCCGTTGCCATCTTTCGAGCCTTCATCGATCGTTATATCGCTGCGGCTCTCAAGGAGGATAGGCCAAAGGAG AGATCCTACGTATTCATGCACGAGCTGATCGATTCGGGCGCCACCCATCAAGAGATCTCGGATCAGCTTCTATCC ATGATTCTCGGCGGTCGTGACACGAGCGCAAGCACCCTCAGCTCCTTGTTCTGGATGCTGGCCCGTCGGCCTGAT GTGGTGCGTGCCATCCGGAACGAAGTACTCCAACTGCAGGGAAAGCGTCCGACATGGGAGCAGCTCAAGGAGCTC AAGTACTTGAACAACGCGCTCAAGGAAGGCGAGTTTACGAATACTCACTGCATGAGCCTCACTTGGAGCACGCAG TCAGTCGGCTGA |
| Gene | >Ophcf2|00992 ATGTCTCGGGAAGCACTGTATCTCGGTCTTTCCATCGCTACGACTTGCTGTCTGGCCTACTCCGTGATCCAACAC TTTTCCGTCCGCGTGGCCGGTCCGACTCTTGTACGTTCGCCATGGCAGATGCTAATTCTCGTCATCGTCCTGTAC TTCGCTCGCTCTCGCCATCATGAGCTGCGTCAGATGCGTCTCCGGGGCGCGGCACCCGGCAAGATATATCCTCAT CGCGATCCGATCTTTGGCATCGACTGGTTCCGGCTCGTGCTCCGGGCTCAGGCCAATGACAAGTTGATACAGATC TGGCACAGCCTCTTGACCGAGAAGATTGGCAAGACCTTTTGGGTAAACGCCATGGGCAACTGGCTTCTCATGACT TGCGAGCCAGAAAACGTCCGAGCCATCCTGCAGGGCCAATTCAAGTCGTGGCCCATCGAGGGCCCGCGGAAACGG ACCACGATAGGTGAGCCCCAATCAACCTACCAATACTTCAAGTTAGATAGTCCTTTGGCCAAGGCCATACTCACA ATCAAGTCCAGCCGTCATCGGATCCAAGTCCATCTTCAGTAGCAACGGGTCTCAATGGGCTCACGCTCGTGCCAT GATGCGTCCGACCTTTGTTCGAAACCAGATCGCTGACCTCGAATGCCTGGACCGCCATGCCGACAACTTTCTGGC CCGTCTGCGGCTAGAGGGTTCCAGGATTGATCTTCAGCATCTCTTTTACTTGTTCACCATGGACACGTCGACCGA TTTCATGTCAGCTGCGCCTCGGCCCTCGGCTATCGGAACGACGCTGACGTCTGCTGCCCCTTTTCAGGTTCGGTC GCTCGACTGAGATGCTGCTACGGCCATCGGACGATGCCGTCGAGTTCACAGAGGCCTTTGACTATGCCTTACGGG CCAGCACCAACCGCGGCCGTGCAGGTTGGCTGGCGTTCATGATGCCAGATAAGAAATTTGATGCCTCCGTTGCCA TCTTTCGAGCCTTCATCGATCGTTATATCGCTGCGGCTCTCAAGGAGGATAGGCCAAAGGAGAGATCCTACGTAT TCATGCACGAGCTGATCGATTCGGGCGCCACCCATCAAGAGATCTCGGATCAGCTTCTATCCATGATTCTCGGCG GTCGTGACACGAGCGCAAGCACCCTCAGCTCCTTGTTCTGGATGCTGGCCCGTCGGCCTGATGTGGTGCGTGCCA TCCGGAACGAAGTACTCCAACTGCAGGGAAAGCGTCCGACATGGGAGCAGCTCAAGGAGCTCAAGTACTTGAACA ACGCGCTCAAGGAAGGCGAGTTTACGAATACTCACTGCATGAGCCTCACTTGGAGCACGCAGTCAGTCGGCTGA |