Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00983
Gene name
Locationscaffold_01:3725490..3727001
Strand+
Gene length (bp)1511
Transcript length (bp)1275
Coding sequence length (bp)1275
Protein length (aa) 425

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03381 CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family 3.2E-99 72 388

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 61 0.5

Transmembrane Domains

Domain # Start End Length
1 53 75 22
2 359 381 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00983
MSDSPPDAGQADSINSHESSPKHSEKKKSRRPANTAFRQQRLKAWQPILTPKTVLPLFFTIGIIFAPIGGLLLYA
SAKVQEIIIDYSKCIQEAQQGVFTEIPSDRVYAAFKSSNRTIDAKWSRTDNVEVFVENTGVRIQTQQCILEFEIP
DRMKPPVLFYYKLTNFHQNHRRYVESFDQDQLKGEAVPFDKIKTSKCNPLYGEDDKPYYPCGLIANSIFNDTFSS
PVMLNPPGAIGNQTRTYDMTQEGIAWSSDKALYGKTTYQFDQILPPPNWQKRYPDGYTDKNPPPDLKTDEVFQNW
MRTAALPSFSKLYQRNDTASMDKGRYRVTINDYFPTSEYKGTKSVVITTRTVMGGRNPFLGIAYLVVGGLCILLG
TVFTATHLIKPRKLGDHTYLSWNKVPTAPRSAGASAAIASGREIRPSEA*
Coding >Ophcf2|00983
ATGTCCGACTCGCCTCCGGACGCCGGCCAAGCCGACTCCATCAACTCGCACGAGTCAAGTCCCAAGCACTCGGAG
AAGAAGAAGAGCCGGCGGCCAGCGAATACCGCTTTTCGTCAGCAGCGTCTCAAGGCTTGGCAGCCCATCCTGACG
CCCAAGACGGTGCTACCTTTGTTCTTCACCATCGGCATCATATTCGCTCCTATCGGCGGCCTGCTTCTCTACGCC
AGCGCCAAGGTCCAGGAGATCATCATCGATTACTCAAAGTGCATACAAGAAGCACAGCAAGGTGTCTTCACCGAG
ATTCCCAGCGATAGGGTATACGCCGCCTTCAAGAGCAGCAACAGAACCATCGACGCCAAATGGTCTCGAACCGAC
AACGTCGAAGTCTTTGTGGAAAACACGGGCGTCAGGATTCAGACCCAACAATGCATCCTCGAATTCGAGATTCCC
GACAGGATGAAACCGCCCGTTCTATTCTACTACAAGCTCACAAACTTCCACCAGAACCATCGTCGCTACGTTGAA
TCGTTCGATCAGGATCAGCTCAAAGGAGAGGCTGTCCCATTCGACAAGATCAAGACGTCCAAGTGCAATCCGCTC
TACGGCGAAGACGATAAACCATACTATCCCTGCGGACTCATCGCCAACTCCATCTTCAACGATACCTTTAGCTCG
CCCGTCATGCTCAACCCCCCCGGAGCTATAGGCAACCAGACTCGCACCTATGACATGACGCAAGAGGGCATCGCC
TGGAGCAGCGACAAGGCCCTCTACGGCAAGACGACGTACCAATTCGACCAGATCCTTCCTCCACCGAACTGGCAG
AAGCGATATCCGGATGGCTACACGGATAAGAATCCTCCTCCCGATCTCAAGACGGACGAGGTCTTTCAGAACTGG
ATGCGAACAGCCGCTCTGCCGTCCTTTAGCAAATTATACCAGAGGAACGACACCGCAAGCATGGACAAGGGCCGA
TACCGAGTCACCATCAACGACTATTTCCCCACGTCGGAATACAAGGGCACCAAGTCCGTCGTCATCACGACCCGC
ACCGTCATGGGAGGCCGCAATCCATTCCTGGGAATAGCCTACCTCGTAGTCGGAGGTCTCTGCATCCTCCTCGGT
ACCGTCTTCACCGCCACCCATCTAATCAAGCCCAGAAAACTGGGCGATCACACGTACCTCTCTTGGAACAAGGTT
CCCACCGCCCCGAGAAGCGCCGGTGCTTCGGCTGCCATCGCATCGGGCCGTGAGATTCGCCCCAGCGAAGCCTAG
Transcript >Ophcf2|00983
ATGTCCGACTCGCCTCCGGACGCCGGCCAAGCCGACTCCATCAACTCGCACGAGTCAAGTCCCAAGCACTCGGAG
AAGAAGAAGAGCCGGCGGCCAGCGAATACCGCTTTTCGTCAGCAGCGTCTCAAGGCTTGGCAGCCCATCCTGACG
CCCAAGACGGTGCTACCTTTGTTCTTCACCATCGGCATCATATTCGCTCCTATCGGCGGCCTGCTTCTCTACGCC
AGCGCCAAGGTCCAGGAGATCATCATCGATTACTCAAAGTGCATACAAGAAGCACAGCAAGGTGTCTTCACCGAG
ATTCCCAGCGATAGGGTATACGCCGCCTTCAAGAGCAGCAACAGAACCATCGACGCCAAATGGTCTCGAACCGAC
AACGTCGAAGTCTTTGTGGAAAACACGGGCGTCAGGATTCAGACCCAACAATGCATCCTCGAATTCGAGATTCCC
GACAGGATGAAACCGCCCGTTCTATTCTACTACAAGCTCACAAACTTCCACCAGAACCATCGTCGCTACGTTGAA
TCGTTCGATCAGGATCAGCTCAAAGGAGAGGCTGTCCCATTCGACAAGATCAAGACGTCCAAGTGCAATCCGCTC
TACGGCGAAGACGATAAACCATACTATCCCTGCGGACTCATCGCCAACTCCATCTTCAACGATACCTTTAGCTCG
CCCGTCATGCTCAACCCCCCCGGAGCTATAGGCAACCAGACTCGCACCTATGACATGACGCAAGAGGGCATCGCC
TGGAGCAGCGACAAGGCCCTCTACGGCAAGACGACGTACCAATTCGACCAGATCCTTCCTCCACCGAACTGGCAG
AAGCGATATCCGGATGGCTACACGGATAAGAATCCTCCTCCCGATCTCAAGACGGACGAGGTCTTTCAGAACTGG
ATGCGAACAGCCGCTCTGCCGTCCTTTAGCAAATTATACCAGAGGAACGACACCGCAAGCATGGACAAGGGCCGA
TACCGAGTCACCATCAACGACTATTTCCCCACGTCGGAATACAAGGGCACCAAGTCCGTCGTCATCACGACCCGC
ACCGTCATGGGAGGCCGCAATCCATTCCTGGGAATAGCCTACCTCGTAGTCGGAGGTCTCTGCATCCTCCTCGGT
ACCGTCTTCACCGCCACCCATCTAATCAAGCCCAGAAAACTGGGCGATCACACGTACCTCTCTTGGAACAAGGTT
CCCACCGCCCCGAGAAGCGCCGGTGCTTCGGCTGCCATCGCATCGGGCCGTGAGATTCGCCCCAGCGAAGCCTAG
Gene >Ophcf2|00983
ATGTCCGACTCGCCTCCGGACGCCGGCCAAGCCGACTCCATCAACTCGCACGAGTCAAGTCCCAAGCACTCGGAG
AAGAAGAAGAGCCGGCGGCCAGCGAGTGCGTGTTCTGCGTGGTCTGCTGTGCGGTTCCTGGCGCTGACGGCGTTG
TGACCAGATACCGCTTTTCGTCAGCAGCGTCTCAAGGCTTGGCAGTGAGTCCGCCTTCCGGTTGCTGGATCTGGG
AGGCATTGCTGAGTTGCGCCAACAGGCCCATCCTGACGCCCAAGACGGTGCTACCTTTGTTCTTCACCATCGGCA
TCATATTCGCTCCTATCGGCGGCCTGCTTCTCTACGCCAGCGCCAAGGTCCAGGAGATCATCATCGATTACTCAA
AGTGCATACAAGAAGCACAGCAAGGTGTCTTCACCGAGATTCCCAGCGATAGGGTATACGCCGCCTTCAAGAGCA
GCAACAGAACCATCGACGCCAAATGGTCTCGAACCGACAACGTCGAAGTCTTTGTGGAAAACACGGGCGTCAGGA
TTCAGACCCAACAATGCATCCTCGAATTCGAGATTCCCGACAGGATGAAACCGCCCGTTCTATTCTACTACAAGC
TCACAAACTTCCACCAGAACCATCGTCGCTACGTTGAATCGTTCGATCAGGATCAGCTCAAAGGAGAGGCTGTCC
CATTCGACAAGATCAAGACGTCCAAGTGCAATCCGCTCTACGGCGAAGACGATAAACCATACTATCCCTGCGGAC
TCATCGCCAACTCCATCTTCAACGATACCTTTAGCTCGCCCGTCATGCTCAACCCCCCCGGAGCTATAGGCAACC
AGACTCGCACCTATGACATGACGCAAGAGGGCATCGCCTGGAGCAGCGACAAGGCCCTCTACGGCAAGACGACGT
ACCAATTCGACCAGATCCTTCCTCCACCGAACTGGCAGAAGCGATATCCGGATGGCTACACGGATAAGAATCCTC
CTCCCGATCTCAAGACGGACGAGGTCTTTCAGAACTGGATGCGAACAGCCGCTCTGCCGTCCTTTAGCAAATTAT
ACCAGAGGAACGACACCGCAAGCATGGACAAGGGCCGATACCGAGTCACCATCAACGACTGTGAGTCAAGCCGAC
CGAGCCCGACATGTTCGTCTGCTAATCCATCCCTCATCAGATTTCCCCACGTCGGAATACAAGGGCACCAAGTCC
GTCGTCATCACGACCCGCACCGTCATGGGAGGCCGCAATCCATTCCTGGGAATAGCCTACCTCGTAGTCGGAGGT
CTCTGCATCCTCCTCGGTACCGTCTTCACCGCCACCCATCTAATCAAGCCCAGGTCAGACCAACCTCTTGAAACT
CCCCATTCCACCCATCACCTTTCCCGCAGCTGACTCTGGCGGACAGAAAACTGGGCGATCACACGTACCTCTCTT
GGAACAAGGTTCCCACCGCCCCGAGAAGCGCCGGTGCTTCGGCTGCCATCGCATCGGGCCGTGAGATTCGCCCCA
GCGAAGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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