Protein ID | Ophcf2|00960 |
Gene name | |
Location | scaffold_01:3675939..3678595 |
Strand | + |
Gene length (bp) | 2656 |
Transcript length (bp) | 1449 |
Coding sequence length (bp) | 1449 |
Protein length (aa) | 483 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00027 | cNMP_binding | Cyclic nucleotide-binding domain | 4.5E-15 | 246 | 336 |
PF00027 | cNMP_binding | Cyclic nucleotide-binding domain | 2.1E-20 | 373 | 454 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 32 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00960 MWGRPRHRLSSSSSSLSIISILSISFSPHLSITPPDSPQTLLSPSPLRSCQAELHPQLVQFCSSIPSRLDLPHLK SPSPRLPETHHVEAGGMDRVMEEDEDDVHNSSSDPDRTIRPDSPDLAPLPPDPAAEAATAPSPRFGADGATDNKR NANTNGNKSDMARKPPGADSYPAHYNFNRRTSVSAESLKPNADTYDNWTPPKHDKTPEQLHRLQRAIGSNFLFKH LEDEQSGQILGAMVEKPVPAKGIKVINQGDAGDFFYIVERGSFDVHVNPAGAIQPGPEGMGAKVGNIQAGGSFGE LALMYNAPRAATVISVEPSCTLWALDRITFRRILMESTFARRRMYESFLEEVPLLSTLTAYERSKIADALETQKF APGDVIIKEGDPGHAFYLLESGEAAAYKGDPSNQVRQYQKGDFFGELALLNDAPRAASVAASSDVKLATLGKNAF QRLLGPVEGILRRTKYEDVETGVEDFDPLSNA* |
Coding | >Ophcf2|00960 ATGTGGGGGAGACCTCGTCACCGGCTCTCCTCCTCCTCCTCCTCCCTCTCCATCATCTCCATCCTCTCCATCTCT TTCTCACCCCACCTCTCCATCACCCCCCCCGACTCGCCCCAAACTTTACTCTCACCTTCGCCTTTGCGGAGCTGC CAAGCAGAGCTCCATCCGCAGCTCGTGCAGTTCTGCAGCTCCATCCCGAGCCGTCTCGACCTTCCCCACTTGAAG TCTCCATCACCAAGGCTTCCAGAAACTCATCATGTCGAGGCTGGCGGCATGGACCGCGTCATGGAGGAGGATGAG GATGACGTGCACAACTCGTCGTCGGACCCGGACAGAACCATCCGTCCCGACTCTCCGGATCTTGCTCCGCTGCCT CCCGACCCGGCGGCCGAGGCGGCCACCGCTCCTTCGCCCAGGTTCGGAGCCGACGGCGCGACCGACAATAAGAGG AACGCCAACACCAACGGCAACAAGTCGGACATGGCCCGCAAGCCCCCTGGCGCCGACAGCTACCCTGCCCACTAC AACTTCAACCGCCGCACCTCGGTCTCGGCCGAGTCGCTCAAGCCCAACGCCGACACGTACGACAACTGGACCCCA CCCAAGCACGACAAGACGCCCGAGCAGCTCCATCGCCTGCAACGAGCCATCGGCAGCAATTTCCTCTTCAAGCAC CTCGAGGACGAGCAGAGCGGCCAGATCCTCGGCGCCATGGTGGAGAAGCCGGTACCGGCCAAGGGCATCAAGGTC ATCAATCAAGGAGACGCGGGCGACTTCTTCTACATTGTCGAAAGGGGCTCCTTTGACGTCCACGTCAACCCGGCC GGGGCTATTCAGCCTGGTCCCGAGGGCATGGGCGCAAAGGTGGGCAACATCCAGGCCGGCGGTTCATTTGGCGAG CTGGCCCTCATGTACAACGCTCCCCGGGCGGCGACTGTCATCTCGGTCGAACCGTCGTGCACGCTGTGGGCGCTG GACCGAATCACGTTCCGCCGAATCCTGATGGAGTCGACGTTTGCCAGACGGCGGATGTACGAGAGCTTCCTCGAG GAGGTGCCTCTGCTGTCGACGCTGACGGCCTACGAGCGGTCCAAGATCGCCGATGCGCTCGAGACGCAGAAGTTT GCCCCCGGCGACGTCATCATCAAAGAGGGCGATCCCGGTCACGCCTTTTACCTGCTCGAGAGCGGCGAGGCGGCC GCCTACAAGGGCGACCCGTCCAACCAGGTGCGCCAGTACCAAAAGGGCGACTTCTTTGGAGAGCTGGCCTTGCTC AACGACGCGCCGAGGGCCGCTAGTGTCGCCGCCTCGTCCGATGTCAAGCTGGCGACGCTGGGCAAGAATGCCTTT CAGAGGCTGCTGGGGCCTGTCGAGGGGATCCTGCGAAGGACAAAGTACGAGGACGTGGAGACGGGAGTCGAGGAC TTTGATCCGCTGTCCAATGCATGA |
Transcript | >Ophcf2|00960 ATGTGGGGGAGACCTCGTCACCGGCTCTCCTCCTCCTCCTCCTCCCTCTCCATCATCTCCATCCTCTCCATCTCT TTCTCACCCCACCTCTCCATCACCCCCCCCGACTCGCCCCAAACTTTACTCTCACCTTCGCCTTTGCGGAGCTGC CAAGCAGAGCTCCATCCGCAGCTCGTGCAGTTCTGCAGCTCCATCCCGAGCCGTCTCGACCTTCCCCACTTGAAG TCTCCATCACCAAGGCTTCCAGAAACTCATCATGTCGAGGCTGGCGGCATGGACCGCGTCATGGAGGAGGATGAG GATGACGTGCACAACTCGTCGTCGGACCCGGACAGAACCATCCGTCCCGACTCTCCGGATCTTGCTCCGCTGCCT CCCGACCCGGCGGCCGAGGCGGCCACCGCTCCTTCGCCCAGGTTCGGAGCCGACGGCGCGACCGACAATAAGAGG AACGCCAACACCAACGGCAACAAGTCGGACATGGCCCGCAAGCCCCCTGGCGCCGACAGCTACCCTGCCCACTAC AACTTCAACCGCCGCACCTCGGTCTCGGCCGAGTCGCTCAAGCCCAACGCCGACACGTACGACAACTGGACCCCA CCCAAGCACGACAAGACGCCCGAGCAGCTCCATCGCCTGCAACGAGCCATCGGCAGCAATTTCCTCTTCAAGCAC CTCGAGGACGAGCAGAGCGGCCAGATCCTCGGCGCCATGGTGGAGAAGCCGGTACCGGCCAAGGGCATCAAGGTC ATCAATCAAGGAGACGCGGGCGACTTCTTCTACATTGTCGAAAGGGGCTCCTTTGACGTCCACGTCAACCCGGCC GGGGCTATTCAGCCTGGTCCCGAGGGCATGGGCGCAAAGGTGGGCAACATCCAGGCCGGCGGTTCATTTGGCGAG CTGGCCCTCATGTACAACGCTCCCCGGGCGGCGACTGTCATCTCGGTCGAACCGTCGTGCACGCTGTGGGCGCTG GACCGAATCACGTTCCGCCGAATCCTGATGGAGTCGACGTTTGCCAGACGGCGGATGTACGAGAGCTTCCTCGAG GAGGTGCCTCTGCTGTCGACGCTGACGGCCTACGAGCGGTCCAAGATCGCCGATGCGCTCGAGACGCAGAAGTTT GCCCCCGGCGACGTCATCATCAAAGAGGGCGATCCCGGTCACGCCTTTTACCTGCTCGAGAGCGGCGAGGCGGCC GCCTACAAGGGCGACCCGTCCAACCAGGTGCGCCAGTACCAAAAGGGCGACTTCTTTGGAGAGCTGGCCTTGCTC AACGACGCGCCGAGGGCCGCTAGTGTCGCCGCCTCGTCCGATGTCAAGCTGGCGACGCTGGGCAAGAATGCCTTT CAGAGGCTGCTGGGGCCTGTCGAGGGGATCCTGCGAAGGACAAAGTACGAGGACGTGGAGACGGGAGTCGAGGAC TTTGATCCGCTGTCCAATGCATGA |
Gene | >Ophcf2|00960 ATGTGGGGGAGAGTTGGTAGGACGGTGGGACGGTAGGACGGGAGGACGGTAGGACGAGATGCCGACGGAGCAACC GACAGCAGATGCGAATACATTGCTTAGAAGAAGAGGGCGACAAAGACGGCAGAGAAGAAGCCAGTCCCGGAGCGG CGACGGATCGACGGCCGGACTCGGCAAAGTCCACGGCGGACGAGGCCCGATACGTGCAAGTCTGCTTACCTACAT GCATACCTAGGTACCTACCTGTAGACATCCACAATTATGCTTACGCTCATCTGCTTACATAAACTCACTTTACAT GCATACGCTTACTGCTTGTATGTATGTACGAGGTACATGCACCGAAGCCCCCGCCGAAGACTTCTCCTCGTTCGC TGCGCTGTCATGGAGCGGGGCGGCGCCTAGTCCGTGCACCGTTCTAGAAAGCTTCCGTCCTAAGGTGTGCTTTTT TTTTTTTTTTTTTTTTTTTTTTTTCATTTTTATTTCTGACCGGGGGGTAGAGGGTAGGGGGGCGTCTGCTCCCTC CCTCGTCCCATCCATCCCACACACACACAGGCTTGTTGTTGTTCCGGTTTGCTACCTCGTCCTCTTCCTCTTCCT CCTCCTCTACCTCCTCCTCTCTACCTCCTCCTCTCTACCTCCTCCTCCCTCTCGTCTCCCGTCTCCCGTCTCTAG CCAGGGACGGTGGCATCAGGCCCTTCTTCCTTCTCGCACTCCAGCCACACACGGCTTCTCACAGACGGCTTCACC GGCCTTCGAAGCCGCCACCTGCCGCCTTCCCACCACCCACACACACTCACCACCCACCCACCCACCGTCTTCTCC GCTCCTCCGCCGCGCCCCTCCCCTGCATCCGTCCCTCTCAATCTACCCCTGTCCGGGACTGGCTCGACAGGCTAC TCCGGCCTGACCTCTCTTTTCCCCTCTGTGACTCTTCCGGGCTTCTATCTCGGACCTCTAGAACGAGGGTCGCGA TAGCCTAGCCTCGTCACCGGCTCTCCTCCTCCTCCTCCTCCCTCTCCATCATCTCCATCCTCTCCATCTCTTTCT CACCCCACCTCTCCATCACCCCCCCCGACTCGCCCCAAACTTTACTCTCACCTTCGCCTTTGCGGAGCTGCCAAG CAGAGCTCCATCCGCAGGTTGGTCATCACTCACCACCACATTTCTCTGCCTTTCCCAGCACTCACAACGCATGAT AGCTCGTGCAGTTCTGCAGCTCCATCCCGAGCCGTCTCGACCTTCCCCACTTGAAGGTATGACTCGTCACGTTGT TTCTCGCTGGCATCTCTCGACGACTGACGCTCTTCAAGTCTCCATCACCAAGGCTTCCAGAAACTCATCATGTCG GGCCTATTCTCCTCCATCTTCAGCTCCAGCCTGAATCCCTTCGGCACCGGTGACCAGGTCGAGGCTGGCGGCATG GACCGCGTCATGGAGGAGGATGAGGATGACGTGCACAACTCGTCGTCGGACCCGGACAGAACCATCCGTCCCGAC TCTCCGGATCTTGCTCCGCTGCCTCCCGACCCGGCGGCCGAGGCGGCCACCGCTCCTTCGCCCAGGTTCGGAGCC GACGGCGCGACCGACAATAAGAGGAACGCCAACACCAACGGCAACAAGTCGGACATGGCCCGCAAGCCCCCTGGC GCCGACAGCTACCCTGCCCACTACAACTTCAACCGCCGCACCTCGGTCTCGGCCGAGTCGCTCAAGCCCAACGCC GACACGTACGACAACTGGACCCCACCCAAGCACGACAAGACGCCCGAGCAGCTCCATCGCCTGCAACGAGCCATC GGCAGCAATTTCCTCTTCAAGCACCTCGAGGACGAGCAGAGCGGCCAGATCCTCGGCGCCATGGTGGAGAAGCCG GTACCGGCCAAGGGCATCAAGGTGAGGACGGCCCCCTCTTCCCCCATTCTTTCCCTCGAGGTGGCTGACACGCAG ACAGGTCATCAATCAAGGAGACGCGGGCGACTTCTTCTACATTGTCGAAAGGGGCTCCTTTGACGTCCACGTCAA CCCGGCCGGGGCTATTCAGCCTGGTCCCGAGGGCATGGGCGCAAAGGTGGGCAACATCCAGGCCGGCGGTTCATT TGGCGAGCTGGCCCTCATGTACAACGCTCCCCGGGCGGCGACTGTCATCTCGGTCGAACCGTCGTGCACGCTGTG GGCGCTGGACCGAATCACGTTCCGCCGAATCCTGATGGAGTCGACGTTTGCCAGACGGCGGATGTACGAGAGCTT CCTCGAGGAGGTGCCTCTGCTGTCGACGCTGACGGCCTACGAGCGGTCCAAGATCGCCGATGCGCTCGAGACGCA GAAGTTTGCCCCCGGCGACGTCATCATCAAAGAGGGCGATCCCGGTCACGCCTTTTACCTGCTCGAGAGCGGCGA GGCGGCCGCCTACAAGGGCGACCCGTCCAACCAGGTGCGCCAGTACCAAAAGGGCGACTTCTTTGGAGAGCTGGC CTTGCTCAACGACGCGCCGAGGGCCGCTAGTGTCGCCGCCTCGTCCGATGTCAAGCTGGCGACGCTGGGCAAGAA TGCCTTTCAGAGGCTGCTGGGGCCTGTCGAGGGGATCCTGCGAAGGACAAAGTACGAGGACGTGGAGACGGGAGT CGAGGACTTTGATCCGCTGTCCAATGCATGA |