© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00946 |
| Gene name | |
| Location | scaffold_01:3636231..3636928 |
| Strand | - |
| Gene length (bp) | 697 |
| Transcript length (bp) | 636 |
| Coding sequence length (bp) | 636 |
| Protein length (aa) | 212 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 55 | 74 | 19 |
| 2 | 87 | 109 | 22 |
| 3 | 119 | 141 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 62.78 | 30.96 | 94.59 |
| Alive | In ants, during behavior modification | 48.07 | 16.13 | 80.00 |
| Dead | In ants, recently dead | 32.52 | 13.49 | 51.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.311360 | no |
| Alive | Dead | 0.093144 | no |
| Dead | Fungus | 0.004376 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00946 MPDSGTASAPLLPSHARRSDGLSSSAPASGSDLSHRLKRMRAAAASGLSSRRKHFAIMAVVGVDVFALLVEVFIR LIACETGQGREAWVVITTSVLGTVGLVISCLFMVELMACLLVYGFGYLCSWFHLFDALVIVISFIVDVGLRGVAG SIGSLVVVLRLWRLAKLSEEVVLGASERMDLLERHLDEIERENKQLRVQLGVEAGHRSSRG* |
| Coding | >Ophcf2|00946 ATGCCCGACTCCGGCACCGCCTCAGCCCCTCTCCTACCGTCTCACGCCCGCCGCTCCGATGGGCTGTCGTCCTCG GCGCCGGCTTCGGGCTCGGATCTGAGCCACCGCCTGAAGCGAATGCGTGCGGCGGCTGCGAGTGGTCTCTCATCG CGCCGCAAGCACTTTGCCATCATGGCCGTTGTCGGCGTCGACGTCTTCGCACTGCTAGTCGAAGTCTTTATCCGG CTCATTGCTTGCGAGACGGGACAGGGCCGTGAGGCATGGGTGGTAATTACCACTTCTGTACTCGGCACTGTCGGT CTGGTTATCAGCTGCCTCTTCATGGTCGAGTTGATGGCTTGCTTGCTCGTCTATGGCTTTGGTTATCTCTGCTCC TGGTTCCACCTATTTGACGCACTCGTCATCGTCATCAGCTTCATAGTCGACGTCGGCCTTCGCGGCGTCGCTGGC TCTATAGGCTCTCTCGTCGTCGTTCTTCGTCTGTGGCGTCTTGCCAAGCTGTCCGAGGAAGTCGTCTTGGGGGCA TCTGAAAGGATGGACTTGTTGGAGCGTCATCTGGACGAGATTGAAAGGGAAAATAAACAGCTGAGGGTTCAGCTC GGAGTAGAGGCCGGGCACCGTTCTAGTCGTGGTTGA |
| Transcript | >Ophcf2|00946 ATGCCCGACTCCGGCACCGCCTCAGCCCCTCTCCTACCGTCTCACGCCCGCCGCTCCGATGGGCTGTCGTCCTCG GCGCCGGCTTCGGGCTCGGATCTGAGCCACCGCCTGAAGCGAATGCGTGCGGCGGCTGCGAGTGGTCTCTCATCG CGCCGCAAGCACTTTGCCATCATGGCCGTTGTCGGCGTCGACGTCTTCGCACTGCTAGTCGAAGTCTTTATCCGG CTCATTGCTTGCGAGACGGGACAGGGCCGTGAGGCATGGGTGGTAATTACCACTTCTGTACTCGGCACTGTCGGT CTGGTTATCAGCTGCCTCTTCATGGTCGAGTTGATGGCTTGCTTGCTCGTCTATGGCTTTGGTTATCTCTGCTCC TGGTTCCACCTATTTGACGCACTCGTCATCGTCATCAGCTTCATAGTCGACGTCGGCCTTCGCGGCGTCGCTGGC TCTATAGGCTCTCTCGTCGTCGTTCTTCGTCTGTGGCGTCTTGCCAAGCTGTCCGAGGAAGTCGTCTTGGGGGCA TCTGAAAGGATGGACTTGTTGGAGCGTCATCTGGACGAGATTGAAAGGGAAAATAAACAGCTGAGGGTTCAGCTC GGAGTAGAGGCCGGGCACCGTTCTAGTCGTGGTTGA |
| Gene | >Ophcf2|00946 ATGCCCGACTCCGGCACCGCCTCAGCCCCTCTCCTACCGTCTCACGCCCGCCGCTCCGATGGGCTGTCGTCCTCG GCGCCGGCTTCGGGCTCGGATCTGAGCCACCGCCTGAAGCGAATGCGTGCGGCGGCTGCGAGTGGTCTCTCATCG CGCCGCAAGCACTTTGCCATCATGGCCGTTGTCGGCGTCGACGTCTTCGCACTGCTAGTCGAAGTCTTTATCCGG CTCATTGCTTGCGAGACGGGACAGGGCCGTGAGGCATGGGTGGTAATTACCACTTCTGTACTCGGCACTGTCGGT CTGGTTATCAGCTGCCTCTTCATGGTCGAGTTGATGGCTTGCTTGCTCGTCTATGGCTTTGGGTAATGGCTTCCA TCTCTCCGTATCATACCGCTTCGTGCTGCTGACTCGAGTCTTGACAAGTTATCTCTGCTCCTGGTTCCACCTATT TGACGCACTCGTCATCGTCATCAGCTTCATAGTCGACGTCGGCCTTCGCGGCGTCGCTGGCTCTATAGGCTCTCT CGTCGTCGTTCTTCGTCTGTGGCGTCTTGCCAAGCTGTCCGAGGAAGTCGTCTTGGGGGCATCTGAAAGGATGGA CTTGTTGGAGCGTCATCTGGACGAGATTGAAAGGGAAAATAAACAGCTGAGGGTTCAGCTCGGAGTAGAGGCCGG GCACCGTTCTAGTCGTGGTTGA |