© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|00915 |
| Gene name | |
| Location | scaffold_01:3480233..3482040 |
| Strand | + |
| Gene length (bp) | 1807 |
| Transcript length (bp) | 1668 |
| Coding sequence length (bp) | 1668 |
| Protein length (aa) | 556 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 1.1E-53 | 37 | 478 |
| PF00324 | AA_permease | Amino acid permease | 3.5E-19 | 50 | 483 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 54 | 22 |
| 2 | 69 | 91 | 22 |
| 3 | 124 | 146 | 22 |
| 4 | 161 | 183 | 22 |
| 5 | 190 | 212 | 22 |
| 6 | 268 | 290 | 22 |
| 7 | 316 | 338 | 22 |
| 8 | 370 | 392 | 22 |
| 9 | 399 | 421 | 22 |
| 10 | 436 | 458 | 22 |
| 11 | 470 | 489 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00915 MNGNSLKPHRTSCDDDAAALERLGHKQELKRNLSVMSMLGLAFAIVNTWTALAASLSVALPSGGCSAVVWGLLTS GVCNMCLAASMAEFLSAYPTAGGQYHWAAIIAGRRAGRAVGFVTGWINVSGWVAISASGGLLGSTFILNAISLLH PGYEPRSWHHFFLHTAITLFALAVNALGARLLPYVTNAALYWALGGLVLTSITIVSCTAPDFQGGAFVYGGFIND VGWPDGLAWMLGLLQGSFALTGYDATAHMIEEMPDPQHHGPRVMLYAVGIGVVTGFFFVSCLLFCIHDVQQVVNA PYGPLLQIYMDATKSVAGSICLVVIPIISVVFTTITLLSVTSRMIYAFARDRGMPFSSVFARVQPGLDVPLNALF GVAGCCLVFGCILVGSSSAMNAITAAAVVALGVTYAIPPAINVIRGRRMLPADRPFKLSEPLGWTVNLVGIAWTA LTTVLFVFPPRAPATPSNMNYCIVAFGIILLLAGLTWVLDGRRHYRGPQIDGLVTGTGFSLVDGIAEGVEKTKDG QRTAGVTSETVSIEASEGTAQADGTTKKDV* |
| Coding | >Ophcf2|00915 ATGAACGGAAACTCGCTCAAACCGCATAGGACGTCATGCGACGACGATGCCGCCGCGCTCGAACGCCTGGGCCAC AAACAGGAGCTCAAGCGCAACTTGTCCGTGATGTCGATGCTCGGGCTGGCCTTTGCCATCGTCAACACCTGGACT GCGCTCGCTGCCTCTCTCAGCGTGGCCTTGCCTTCGGGCGGTTGCAGCGCTGTCGTCTGGGGCTTGCTGACGTCG GGTGTGTGTAACATGTGCCTCGCGGCGTCCATGGCAGAGTTCCTTTCTGCCTATCCTACAGCCGGGGGTCAGTAT CACTGGGCTGCCATCATCGCCGGTCGTCGAGCTGGACGCGCTGTTGGCTTCGTTACCGGCTGGATCAACGTCTCG GGCTGGGTGGCCATCAGCGCCTCGGGAGGCCTCCTGGGATCGACCTTTATTCTCAACGCCATCTCGCTGCTGCAT CCGGGCTACGAGCCCCGATCGTGGCATCATTTCTTTCTCCATACCGCCATCACTCTCTTCGCGCTGGCCGTCAAC GCCCTGGGCGCCAGGCTGTTGCCGTACGTGACCAACGCGGCGCTGTATTGGGCGCTGGGCGGTCTGGTCTTGACT TCCATCACCATCGTGTCCTGTACGGCGCCCGACTTTCAAGGCGGTGCCTTTGTTTATGGCGGTTTCATCAACGAC GTCGGCTGGCCCGACGGACTGGCTTGGATGCTGGGGCTGCTTCAGGGCTCGTTTGCGCTGACGGGCTACGACGCG ACGGCTCACATGATCGAGGAGATGCCCGATCCTCAGCATCACGGCCCTCGCGTCATGCTCTACGCCGTCGGTATC GGCGTCGTCACCGGCTTCTTCTTCGTCAGCTGCCTGCTCTTCTGCATCCATGACGTACAGCAGGTCGTCAACGCC CCTTACGGCCCGCTGCTGCAGATATACATGGACGCCACCAAGAGCGTGGCCGGTAGCATCTGTCTCGTCGTCATC CCCATCATCAGCGTCGTCTTTACCACAATCACCCTGCTCTCCGTCACCAGCCGCATGATCTACGCCTTTGCCCGC GACAGGGGCATGCCCTTTAGCAGCGTCTTCGCCCGGGTCCAGCCGGGGCTCGACGTGCCGTTGAACGCCCTGTTT GGGGTGGCCGGCTGCTGTCTCGTCTTTGGCTGCATCTTGGTGGGCTCCTCGAGCGCCATGAATGCCATCACGGCG GCGGCGGTGGTGGCCCTAGGCGTCACCTACGCCATCCCTCCGGCCATCAACGTCATCCGGGGCCGCCGCATGTTA CCGGCGGACCGACCTTTTAAGCTGTCGGAGCCACTGGGATGGACGGTGAACCTGGTGGGCATCGCCTGGACGGCA TTGACGACGGTGCTCTTCGTCTTCCCTCCGCGAGCACCGGCGACGCCCAGCAACATGAACTACTGCATCGTCGCC TTCGGCATCATCCTGCTGCTGGCCGGCCTGACGTGGGTGCTAGACGGACGACGACACTACCGCGGCCCTCAGATC GACGGCCTGGTGACGGGCACGGGCTTCAGCTTGGTCGACGGCATCGCCGAGGGCGTCGAGAAGACCAAGGACGGG CAGCGGACGGCGGGCGTCACGTCCGAGACGGTGTCCATCGAGGCCTCCGAGGGGACGGCTCAGGCTGATGGCACT ACCAAGAAGGACGTCTAG |
| Transcript | >Ophcf2|00915 ATGAACGGAAACTCGCTCAAACCGCATAGGACGTCATGCGACGACGATGCCGCCGCGCTCGAACGCCTGGGCCAC AAACAGGAGCTCAAGCGCAACTTGTCCGTGATGTCGATGCTCGGGCTGGCCTTTGCCATCGTCAACACCTGGACT GCGCTCGCTGCCTCTCTCAGCGTGGCCTTGCCTTCGGGCGGTTGCAGCGCTGTCGTCTGGGGCTTGCTGACGTCG GGTGTGTGTAACATGTGCCTCGCGGCGTCCATGGCAGAGTTCCTTTCTGCCTATCCTACAGCCGGGGGTCAGTAT CACTGGGCTGCCATCATCGCCGGTCGTCGAGCTGGACGCGCTGTTGGCTTCGTTACCGGCTGGATCAACGTCTCG GGCTGGGTGGCCATCAGCGCCTCGGGAGGCCTCCTGGGATCGACCTTTATTCTCAACGCCATCTCGCTGCTGCAT CCGGGCTACGAGCCCCGATCGTGGCATCATTTCTTTCTCCATACCGCCATCACTCTCTTCGCGCTGGCCGTCAAC GCCCTGGGCGCCAGGCTGTTGCCGTACGTGACCAACGCGGCGCTGTATTGGGCGCTGGGCGGTCTGGTCTTGACT TCCATCACCATCGTGTCCTGTACGGCGCCCGACTTTCAAGGCGGTGCCTTTGTTTATGGCGGTTTCATCAACGAC GTCGGCTGGCCCGACGGACTGGCTTGGATGCTGGGGCTGCTTCAGGGCTCGTTTGCGCTGACGGGCTACGACGCG ACGGCTCACATGATCGAGGAGATGCCCGATCCTCAGCATCACGGCCCTCGCGTCATGCTCTACGCCGTCGGTATC GGCGTCGTCACCGGCTTCTTCTTCGTCAGCTGCCTGCTCTTCTGCATCCATGACGTACAGCAGGTCGTCAACGCC CCTTACGGCCCGCTGCTGCAGATATACATGGACGCCACCAAGAGCGTGGCCGGTAGCATCTGTCTCGTCGTCATC CCCATCATCAGCGTCGTCTTTACCACAATCACCCTGCTCTCCGTCACCAGCCGCATGATCTACGCCTTTGCCCGC GACAGGGGCATGCCCTTTAGCAGCGTCTTCGCCCGGGTCCAGCCGGGGCTCGACGTGCCGTTGAACGCCCTGTTT GGGGTGGCCGGCTGCTGTCTCGTCTTTGGCTGCATCTTGGTGGGCTCCTCGAGCGCCATGAATGCCATCACGGCG GCGGCGGTGGTGGCCCTAGGCGTCACCTACGCCATCCCTCCGGCCATCAACGTCATCCGGGGCCGCCGCATGTTA CCGGCGGACCGACCTTTTAAGCTGTCGGAGCCACTGGGATGGACGGTGAACCTGGTGGGCATCGCCTGGACGGCA TTGACGACGGTGCTCTTCGTCTTCCCTCCGCGAGCACCGGCGACGCCCAGCAACATGAACTACTGCATCGTCGCC TTCGGCATCATCCTGCTGCTGGCCGGCCTGACGTGGGTGCTAGACGGACGACGACACTACCGCGGCCCTCAGATC GACGGCCTGGTGACGGGCACGGGCTTCAGCTTGGTCGACGGCATCGCCGAGGGCGTCGAGAAGACCAAGGACGGG CAGCGGACGGCGGGCGTCACGTCCGAGACGGTGTCCATCGAGGCCTCCGAGGGGACGGCTCAGGCTGATGGCACT ACCAAGAAGGACGTCTAG |
| Gene | >Ophcf2|00915 ATGAACGGAAACTCGCTCAAACCGCATAGGACGTCATGCGACGACGATGCCGCCGCGCTCGAACGCCTGGGCCAC AAACAGGAGCTCAAGCGCAACTTGTCCGTGATGTCGATGCTCGGGCTGGCCTTTGCCATCGTCAACACCTGGACT GCGCTCGCTGCCTCTCTCAGCGTGGCCTTGCCTTCGGGCGGTTGCAGCGCTGTCGTCTGGGGCTTGCTGACGTCG GGTGTGTGTAACATGTGCCTCGCGGCGTCCATGGCAGAGTTCCTTTCTGCCTATCCTACAGCCGGGGGTCAGTAT CACTGGGCTGCCATCATCGCCGGTCGTCGAGCTGGACGCGCTGTTGGCTTCGTTACCGGCTGGATCAACGTCTCG GGCTGGGTGGCCATCAGCGCCTCGGGAGGCCTCCTGGGATCGACCTTTATTCTCAACGCCATCTCGCTGCTGCAT CCGGGCTACGAGCCCCGATCGTGGCATCATTTCTTTCTCCATACCGCCATCACTCTCTTCGCGCTGGCCGTCAAC GCCCTGGGCGCCAGGCTGTTGCCGTACGTGACCAACGCGGCGCTGTATTGGGCGCTGGGCGGTCTGGTCTTGACT TCCATCACCATCGTGTCCTGTACGGCGCCCGACTTTCAAGGCGGTGCCTTTGTTTATGGCGGTTTCATCAACGAC GTCGGCTGGCCCGACGGACTGGCTTGGATGCTGGGGCTGCTTCAGGGCTCGTTTGCGCTGACGGGTGAGCGACGA CGGAGAAAGATGGAGAGAGGGAGAGAGAAGGACACGTCTTGGAAGGCTGACAACTCGCTGTAGGCTACGACGCGA CGGCTCACATGATCGAGGAGATGCCCGATCCTCAGCATCACGGCCCTCGCGTCATGCTCTACGCCGTCGGTATCG GCGTCGTCACCGGCTTCTTCTTCGTCAGCTGCCTGCTCTTCTGCATCCATGACGTACAGCAGGTCGTCAACGCCC CTTACGGCCCGCTGCTGCAGATATACATGGACGCCACCAAGAGCGTGGCCGGTAGCATCTGTCTCGTCGTCATCC CCATCATCAGCGTCGTCTTTACCACAATCACCCTGCTCTCCGTCACCAGCCGCATGATCTACGCCTTTGCCCGCG ACAGGGGCATGCCCTTTAGCAGCGTCTTCGCCCGGGTCCAGCCGGGGCTCGACGTGCCGTTGAACGCCCTGTTTG GGGTGGCCGGCTGCTGTCTCGTCTTTGGCTGCATCTTGGTGGGCTCCTCGAGCGCCATGAATGCCATCACGGCGG CGGCGGTGGTGGCCCTAGGCGTCACCTACGCCATCCCTCCGGCCATCAACGTCATCCGGGGCCGCCGCATGTTAC CGGCGGACCGACCTTTTAAGCTGTCGGAGCCACTGGGATGGACGGTGAACCTGGTGAGCGCCGAGCCCCTTTTCG AGACGACACCTCTCATCCAATGCTGACGGCGAGGGCGACCAAGGTGGGCATCGCCTGGACGGCATTGACGACGGT GCTCTTCGTCTTCCCTCCGCGAGCACCGGCGACGCCCAGCAACATGAACTACTGCATCGTCGCCTTCGGCATCAT CCTGCTGCTGGCCGGCCTGACGTGGGTGCTAGACGGACGACGACACTACCGCGGCCCTCAGATCGACGGCCTGGT GACGGGCACGGGCTTCAGCTTGGTCGACGGCATCGCCGAGGGCGTCGAGAAGACCAAGGACGGGCAGCGGACGGC GGGCGTCACGTCCGAGACGGTGTCCATCGAGGCCTCCGAGGGGACGGCTCAGGCTGATGGCACTACCAAGAAGGA CGTCTAG |