© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00900 |
| Gene name | |
| Location | scaffold_01:3447208..3448161 |
| Strand | + |
| Gene length (bp) | 953 |
| Transcript length (bp) | 792 |
| Coding sequence length (bp) | 792 |
| Protein length (aa) | 264 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05730 | CFEM | CFEM domain | 9.7E-06 | 23 | 87 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 182 | 204 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 80.31 | 43.91 | 116.72 |
| Alive | In ants, during behavior modification | 82.53 | 43.33 | 121.72 |
| Dead | In ants, recently dead | 101.52 | 56.25 | 146.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.917630 | no |
| Alive | Dead | 0.252465 | no |
| Dead | Fungus | 0.254696 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00900 MGRLAPLVVVAALTISNAAAQNPGTPPCIPECANRVRADFAKFTCQNANDAACLCTKDNFSFGVRDCGAHCGAND DNVRQFLLGSFCAGGVFPQSASTQAQATPTSPLASTQPLSTSAIPSTTQQTTSSFTNASSSIVTTSSSATSASET SSDVEAAPPSSTSTEAEVSTAPAGSSSQGTVIGIGIGVGAAVIALAGVVICFLLRGRKQKPRHSIEISKPLPGSG RAYAGRERNSFEKQGNDIEMTSHRYEDMVPRQQPRTMV* |
| Coding | >Ophcf2|00900 ATGGGCCGTCTCGCGCCGCTTGTCGTCGTCGCCGCTTTAACCATCTCCAACGCCGCTGCTCAGAACCCTGGGACG CCACCATGCATCCCAGAATGCGCCAACCGAGTGAGGGCCGACTTCGCCAAGTTCACATGTCAGAACGCGAATGAT GCCGCCTGTCTTTGCACCAAGGACAACTTTTCCTTCGGAGTTCGCGACTGTGGCGCCCACTGTGGCGCCAACGAT GACAACGTCCGCCAGTTTCTGCTCGGCTCCTTTTGTGCAGGCGGCGTGTTTCCGCAGTCCGCCTCTACTCAGGCA CAGGCCACGCCCACTTCTCCCCTGGCGTCGACGCAACCGTTGTCCACCAGTGCCATACCGTCCACGACGCAGCAG ACTACATCTTCGTTCACAAATGCGTCGTCCTCCATCGTCACGACCTCGAGTTCTGCGACTTCTGCCTCGGAAACG TCCTCAGATGTGGAAGCTGCCCCTCCGAGTTCCACGTCTACCGAAGCAGAAGTGAGCACTGCGCCAGCTGGCAGC TCATCTCAGGGGACCGTCATCGGCATCGGTATTGGCGTGGGAGCTGCTGTCATTGCCCTCGCCGGCGTCGTCATC TGCTTCTTGCTTCGCGGTCGCAAACAGAAACCCCGTCACTCGATTGAGATCTCCAAGCCGCTCCCTGGGTCGGGT AGAGCTTATGCGGGCCGCGAACGCAACTCGTTCGAGAAGCAGGGCAACGATATCGAGATGACGTCGCACCGTTAT GAAGACATGGTGCCCCGCCAGCAGCCGAGGACCATGGTTTAA |
| Transcript | >Ophcf2|00900 ATGGGCCGTCTCGCGCCGCTTGTCGTCGTCGCCGCTTTAACCATCTCCAACGCCGCTGCTCAGAACCCTGGGACG CCACCATGCATCCCAGAATGCGCCAACCGAGTGAGGGCCGACTTCGCCAAGTTCACATGTCAGAACGCGAATGAT GCCGCCTGTCTTTGCACCAAGGACAACTTTTCCTTCGGAGTTCGCGACTGTGGCGCCCACTGTGGCGCCAACGAT GACAACGTCCGCCAGTTTCTGCTCGGCTCCTTTTGTGCAGGCGGCGTGTTTCCGCAGTCCGCCTCTACTCAGGCA CAGGCCACGCCCACTTCTCCCCTGGCGTCGACGCAACCGTTGTCCACCAGTGCCATACCGTCCACGACGCAGCAG ACTACATCTTCGTTCACAAATGCGTCGTCCTCCATCGTCACGACCTCGAGTTCTGCGACTTCTGCCTCGGAAACG TCCTCAGATGTGGAAGCTGCCCCTCCGAGTTCCACGTCTACCGAAGCAGAAGTGAGCACTGCGCCAGCTGGCAGC TCATCTCAGGGGACCGTCATCGGCATCGGTATTGGCGTGGGAGCTGCTGTCATTGCCCTCGCCGGCGTCGTCATC TGCTTCTTGCTTCGCGGTCGCAAACAGAAACCCCGTCACTCGATTGAGATCTCCAAGCCGCTCCCTGGGTCGGGT AGAGCTTATGCGGGCCGCGAACGCAACTCGTTCGAGAAGCAGGGCAACGATATCGAGATGACGTCGCACCGTTAT GAAGACATGGTGCCCCGCCAGCAGCCGAGGACCATGGTTTAA |
| Gene | >Ophcf2|00900 ATGGGCCGTCTCGCGCCGCTTGTCGTCGTCGCCGCTTTAACCATCTCCAACGCCGCTGCTCAGAACCCTGGGACG CCACCATGCATCGTGAGAAGCGTCGCTTCCCGCACCCAAGAACGTTCATCGCTGACCTCATCAACAGCCAGAATG CGCCAACCGAGTGAGGGCCGACTTCGCCAAGTTCACATGTCAGAACGCGAATGATGCCGCCTGTCTTTGCACCAA GGACAACTTTTCCTTCGGAGTTCGCGACTGTGGCGCCCACTGTGGCGCCAACGATGACAACGTCCGCCAGTTTCT GCTCGGCTCCTTTTGTGCAGGTAAAGAAGATGGCGTCGCTTTCTACCCTCAGTCCCCGACTGACACCCGATATAG GCGGCGTGTTTCCGCAGTCCGCCTCTACTCAGGCACAGGCCACGCCCACTTCTCCCCTGGCGTCGACGCAACCGT TGTCCACCAGTGCCATACCGTCCACGACGCAGCAGACTACATCTTCGTTCACAAATGCGTCGTCCTCCATCGTCA CGACCTCGAGTGTGAGTCGGAAAGCTGGTCATGAGTCCTGATTCGGCTAACAGACATGCCAGTCTGCGACTTCTG CCTCGGAAACGTCCTCAGATGTGGAAGCTGCCCCTCCGAGTTCCACGTCTACCGAAGCAGAAGTGAGCACTGCGC CAGCTGGCAGCTCATCTCAGGGGACCGTCATCGGCATCGGTATTGGCGTGGGAGCTGCTGTCATTGCCCTCGCCG GCGTCGTCATCTGCTTCTTGCTTCGCGGTCGCAAACAGAAACCCCGTCACTCGATTGAGATCTCCAAGCCGCTCC CTGGGTCGGGTAGAGCTTATGCGGGCCGCGAACGCAACTCGTTCGAGAAGCAGGGCAACGATATCGAGATGACGT CGCACCGTTATGAAGACATGGTGCCCCGCCAGCAGCCGAGGACCATGGTTTAA |