© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00873 |
| Gene name | |
| Location | scaffold_01:3347839..3348502 |
| Strand | + |
| Gene length (bp) | 663 |
| Transcript length (bp) | 603 |
| Coding sequence length (bp) | 603 |
| Protein length (aa) | 201 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 5.7E-12 | 142 | 195 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Peroxisome | Peroxisomal targeting signal | 0.0323 | 0.0978 | 0.0164 | 0.0309 | 0.6179 | 0.1802 | 0.5755 | 0.1529 | 0.1738 | 0.8776 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 85 | 107 | 22 |
| 3 | 176 | 198 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5457 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00873 MSLRPLVTATAQAALLGALSNVFAQLLAAEGRKSVDWIPVLQFLLFSIISTPPNYLWQEFLESTYPAHPRKNKGS LSVYNTMAKFILDQTIGAVVNTLLFSLFIHALQDAMATAPRVTSLSAAAAYFLRRGAVDLGRVDAASVVAASKRD FWPIVRAGVKVWPAVSLFNFMVVKTVAARNLVGALAGVAWGVYMSTVAAR* |
| Coding | >Ophcf2|00873 ATGAGTCTGCGACCTCTCGTGACGGCGACGGCGCAGGCGGCCCTCTTGGGCGCTCTCTCCAATGTTTTCGCGCAG CTGCTGGCGGCCGAGGGCAGAAAGTCGGTGGATTGGATTCCCGTGCTGCAGTTTCTGCTGTTTAGCATCATCAGC ACGCCGCCCAATTATCTCTGGCAGGAATTCCTCGAGTCGACGTATCCTGCTCACCCGCGCAAGAACAAAGGCTCT CTCTCCGTCTACAACACCATGGCAAAGTTCATCCTCGACCAGACCATCGGCGCCGTCGTCAACACCCTCCTCTTC AGCCTCTTCATCCACGCGCTGCAGGACGCCATGGCGACGGCACCGCGCGTGACTAGCCTTTCGGCGGCGGCGGCT TACTTTCTGAGACGTGGCGCTGTTGACCTCGGACGCGTCGATGCTGCTTCCGTCGTTGCTGCTTCGAAGCGTGAT TTCTGGCCTATTGTTCGCGCGGGGGTCAAGGTTTGGCCTGCTGTTAGCTTGTTTAATTTCATGGTGGTTAAGACG GTCGCCGCGAGGAACTTGGTTGGGGCGTTGGCGGGGGTTGCCTGGGGGGTTTATATGAGTACCGTGGCTGCGCGG TAG |
| Transcript | >Ophcf2|00873 ATGAGTCTGCGACCTCTCGTGACGGCGACGGCGCAGGCGGCCCTCTTGGGCGCTCTCTCCAATGTTTTCGCGCAG CTGCTGGCGGCCGAGGGCAGAAAGTCGGTGGATTGGATTCCCGTGCTGCAGTTTCTGCTGTTTAGCATCATCAGC ACGCCGCCCAATTATCTCTGGCAGGAATTCCTCGAGTCGACGTATCCTGCTCACCCGCGCAAGAACAAAGGCTCT CTCTCCGTCTACAACACCATGGCAAAGTTCATCCTCGACCAGACCATCGGCGCCGTCGTCAACACCCTCCTCTTC AGCCTCTTCATCCACGCGCTGCAGGACGCCATGGCGACGGCACCGCGCGTGACTAGCCTTTCGGCGGCGGCGGCT TACTTTCTGAGACGTGGCGCTGTTGACCTCGGACGCGTCGATGCTGCTTCCGTCGTTGCTGCTTCGAAGCGTGAT TTCTGGCCTATTGTTCGCGCGGGGGTCAAGGTTTGGCCTGCTGTTAGCTTGTTTAATTTCATGGTGGTTAAGACG GTCGCCGCGAGGAACTTGGTTGGGGCGTTGGCGGGGGTTGCCTGGGGGGTTTATATGAGTACCGTGGCTGCGCGG TAG |
| Gene | >Ophcf2|00873 ATGAGTCTGCGACCTCTCGTGACGGCGACGGCGCAGGCGGCCCTCTTGGGCGCTCTCTCCAATGTTTTCGCGCAG CTGCTGGCGGCCGAGGGCAGAAAGTCGGTGGATTGGATTCCCGTGCTGCAGTTTCTGCTGTTTAGCATCATCAGC ACGCCGCCCAATTATCTCTGGTGAGTTCTCTCCTCCCGTCATACGGAAGCAGAGCGAACAAGACTGATGAAGTAT TCTAGGCAGGAATTCCTCGAGTCGACGTATCCTGCTCACCCGCGCAAGAACAAAGGCTCTCTCTCCGTCTACAAC ACCATGGCAAAGTTCATCCTCGACCAGACCATCGGCGCCGTCGTCAACACCCTCCTCTTCAGCCTCTTCATCCAC GCGCTGCAGGACGCCATGGCGACGGCACCGCGCGTGACTAGCCTTTCGGCGGCGGCGGCTTACTTTCTGAGACGT GGCGCTGTTGACCTCGGACGCGTCGATGCTGCTTCCGTCGTTGCTGCTTCGAAGCGTGATTTCTGGCCTATTGTT CGCGCGGGGGTCAAGGTTTGGCCTGCTGTTAGCTTGTTTAATTTCATGGTGGTTAAGACGGTCGCCGCGAGGAAC TTGGTTGGGGCGTTGGCGGGGGTTGCCTGGGGGGTTTATATGAGTACCGTGGCTGCGCGGTAG |