Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00873
Gene name
Locationscaffold_01:3347839..3348502
Strand+
Gene length (bp)663
Transcript length (bp)603
Coding sequence length (bp)603
Protein length (aa) 201

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 5.7E-12 142 195

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 85 107 22
3 176 198 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00873
MSLRPLVTATAQAALLGALSNVFAQLLAAEGRKSVDWIPVLQFLLFSIISTPPNYLWQEFLESTYPAHPRKNKGS
LSVYNTMAKFILDQTIGAVVNTLLFSLFIHALQDAMATAPRVTSLSAAAAYFLRRGAVDLGRVDAASVVAASKRD
FWPIVRAGVKVWPAVSLFNFMVVKTVAARNLVGALAGVAWGVYMSTVAAR*
Coding >Ophcf2|00873
ATGAGTCTGCGACCTCTCGTGACGGCGACGGCGCAGGCGGCCCTCTTGGGCGCTCTCTCCAATGTTTTCGCGCAG
CTGCTGGCGGCCGAGGGCAGAAAGTCGGTGGATTGGATTCCCGTGCTGCAGTTTCTGCTGTTTAGCATCATCAGC
ACGCCGCCCAATTATCTCTGGCAGGAATTCCTCGAGTCGACGTATCCTGCTCACCCGCGCAAGAACAAAGGCTCT
CTCTCCGTCTACAACACCATGGCAAAGTTCATCCTCGACCAGACCATCGGCGCCGTCGTCAACACCCTCCTCTTC
AGCCTCTTCATCCACGCGCTGCAGGACGCCATGGCGACGGCACCGCGCGTGACTAGCCTTTCGGCGGCGGCGGCT
TACTTTCTGAGACGTGGCGCTGTTGACCTCGGACGCGTCGATGCTGCTTCCGTCGTTGCTGCTTCGAAGCGTGAT
TTCTGGCCTATTGTTCGCGCGGGGGTCAAGGTTTGGCCTGCTGTTAGCTTGTTTAATTTCATGGTGGTTAAGACG
GTCGCCGCGAGGAACTTGGTTGGGGCGTTGGCGGGGGTTGCCTGGGGGGTTTATATGAGTACCGTGGCTGCGCGG
TAG
Transcript >Ophcf2|00873
ATGAGTCTGCGACCTCTCGTGACGGCGACGGCGCAGGCGGCCCTCTTGGGCGCTCTCTCCAATGTTTTCGCGCAG
CTGCTGGCGGCCGAGGGCAGAAAGTCGGTGGATTGGATTCCCGTGCTGCAGTTTCTGCTGTTTAGCATCATCAGC
ACGCCGCCCAATTATCTCTGGCAGGAATTCCTCGAGTCGACGTATCCTGCTCACCCGCGCAAGAACAAAGGCTCT
CTCTCCGTCTACAACACCATGGCAAAGTTCATCCTCGACCAGACCATCGGCGCCGTCGTCAACACCCTCCTCTTC
AGCCTCTTCATCCACGCGCTGCAGGACGCCATGGCGACGGCACCGCGCGTGACTAGCCTTTCGGCGGCGGCGGCT
TACTTTCTGAGACGTGGCGCTGTTGACCTCGGACGCGTCGATGCTGCTTCCGTCGTTGCTGCTTCGAAGCGTGAT
TTCTGGCCTATTGTTCGCGCGGGGGTCAAGGTTTGGCCTGCTGTTAGCTTGTTTAATTTCATGGTGGTTAAGACG
GTCGCCGCGAGGAACTTGGTTGGGGCGTTGGCGGGGGTTGCCTGGGGGGTTTATATGAGTACCGTGGCTGCGCGG
TAG
Gene >Ophcf2|00873
ATGAGTCTGCGACCTCTCGTGACGGCGACGGCGCAGGCGGCCCTCTTGGGCGCTCTCTCCAATGTTTTCGCGCAG
CTGCTGGCGGCCGAGGGCAGAAAGTCGGTGGATTGGATTCCCGTGCTGCAGTTTCTGCTGTTTAGCATCATCAGC
ACGCCGCCCAATTATCTCTGGTGAGTTCTCTCCTCCCGTCATACGGAAGCAGAGCGAACAAGACTGATGAAGTAT
TCTAGGCAGGAATTCCTCGAGTCGACGTATCCTGCTCACCCGCGCAAGAACAAAGGCTCTCTCTCCGTCTACAAC
ACCATGGCAAAGTTCATCCTCGACCAGACCATCGGCGCCGTCGTCAACACCCTCCTCTTCAGCCTCTTCATCCAC
GCGCTGCAGGACGCCATGGCGACGGCACCGCGCGTGACTAGCCTTTCGGCGGCGGCGGCTTACTTTCTGAGACGT
GGCGCTGTTGACCTCGGACGCGTCGATGCTGCTTCCGTCGTTGCTGCTTCGAAGCGTGATTTCTGGCCTATTGTT
CGCGCGGGGGTCAAGGTTTGGCCTGCTGTTAGCTTGTTTAATTTCATGGTGGTTAAGACGGTCGCCGCGAGGAAC
TTGGTTGGGGCGTTGGCGGGGGTTGCCTGGGGGGTTTATATGAGTACCGTGGCTGCGCGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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