Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|00773
Gene name
Location	scaffold_01:2930283..2930967
Strand	+
Gene length (bp)	684
Transcript length (bp)	684
Coding sequence length (bp)	684
Protein length (aa)	228

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 29	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	33.40	14.66	52.14
Alive	In ants, during behavior modification	160.65	90.75	230.54
Dead	In ants, recently dead	106.34	58.71	153.97

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.009594	yes
Dead	Fungus	0.000238	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|00773 MADSGWLPWTALCLSLVVLAHLVATYWAAYLAAPLEVAVLVDAVDFSVQDKESYDGDVATVQRLEDKMRLGRLLR EIHRGGDDLREHLNRLLVNDKVDDKALTTAARLLWASHRVELRDKLRTLDLLRMRFLVVYMGTIAVSQEKSTTMT TTTTTVAAPVPSALHRQLAESIARRPPPRRLTTQAIGHQENVTTPQRRGWAGVVEELQTSPRMQRRHASLEQTTM RS*
Coding	>Ophcf2\|00773 ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG CGTTCGTGA
Transcript	>Ophcf2\|00773 ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG CGTTCGTGA
Gene	>Ophcf2\|00773 ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG CGTTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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