Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00773
Gene name
Locationscaffold_01:2930283..2930967
Strand+
Gene length (bp)684
Transcript length (bp)684
Coding sequence length (bp)684
Protein length (aa) 228

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 33.40 14.66 52.14
Alive In ants, during behavior modification 160.65 90.75 230.54
Dead In ants, recently dead 106.34 58.71 153.97

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.009594 yes
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00773
MADSGWLPWTALCLSLVVLAHLVATYWAAYLAAPLEVAVLVDAVDFSVQDKESYDGDVATVQRLEDKMRLGRLLR
EIHRGGDDLREHLNRLLVNDKVDDKALTTAARLLWASHRVELRDKLRTLDLLRMRFLVVYMGTIAVSQEKSTTMT
TTTTTVAAPVPSALHRQLAESIARRPPPRRLTTQAIGHQENVTTPQRRGWAGVVEELQTSPRMQRRHASLEQTTM
RS*
Coding >Ophcf2|00773
ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC
TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT
AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT
GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG
GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT
CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG
ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC
CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG
GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG
CGTTCGTGA
Transcript >Ophcf2|00773
ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC
TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT
AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT
GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG
GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT
CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG
ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC
CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG
GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG
CGTTCGTGA
Gene >Ophcf2|00773
ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC
TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT
AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT
GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG
GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT
CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG
ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC
CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG
GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG
CGTTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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