Protein ID | Ophcf2|00773 |
Gene name | |
Location | scaffold_01:2930283..2930967 |
Strand | + |
Gene length (bp) | 684 |
Transcript length (bp) | 684 |
Coding sequence length (bp) | 684 |
Protein length (aa) | 228 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.2158 | 0.1398 | 0.2193 | 0.3314 | 0.318 | 0.0652 | 0.655 | 0.4323 | 0.4135 | 0.0388 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 33.40 | 14.66 | 52.14 |
Alive | In ants, during behavior modification | 160.65 | 90.75 | 230.54 |
Dead | In ants, recently dead | 106.34 | 58.71 | 153.97 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.000238 | yes |
Alive | Dead | 0.009594 | yes |
Dead | Fungus | 0.000238 | yes |
Orthofinder run ID | 4 |
Orthogroup | 3555 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00773 MADSGWLPWTALCLSLVVLAHLVATYWAAYLAAPLEVAVLVDAVDFSVQDKESYDGDVATVQRLEDKMRLGRLLR EIHRGGDDLREHLNRLLVNDKVDDKALTTAARLLWASHRVELRDKLRTLDLLRMRFLVVYMGTIAVSQEKSTTMT TTTTTVAAPVPSALHRQLAESIARRPPPRRLTTQAIGHQENVTTPQRRGWAGVVEELQTSPRMQRRHASLEQTTM RS* |
Coding | >Ophcf2|00773 ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG CGTTCGTGA |
Transcript | >Ophcf2|00773 ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG CGTTCGTGA |
Gene | >Ophcf2|00773 ATGGCCGACTCGGGCTGGCTGCCATGGACGGCGCTATGCCTATCACTCGTTGTCCTCGCCCACCTCGTCGCCACC TACTGGGCTGCTTACTTGGCCGCGCCACTCGAGGTAGCCGTCCTGGTGGACGCTGTCGACTTTTCCGTACAGGAT AAGGAGAGCTATGATGGTGACGTGGCTACGGTGCAGCGGCTCGAGGATAAGATGCGTCTGGGCCGACTTCTGCGT GAGATTCACCGCGGCGGCGACGACCTGCGCGAGCACCTCAACCGTCTGCTGGTTAACGACAAGGTCGACGACAAG GCCTTGACTACGGCTGCGAGGCTACTCTGGGCTTCGCACCGGGTCGAGCTTCGTGACAAGCTCCGGACATTGGAT CTGCTGCGTATGCGCTTCCTCGTCGTCTACATGGGCACTATTGCCGTCTCCCAGGAAAAGTCGACGACGATGACG ACGACGACGACGACGGTCGCAGCCCCCGTACCGTCAGCCCTGCACAGACAACTGGCCGAGAGTATCGCCCGCCGC CCGCCTCCGCGTCGCCTCACCACTCAGGCCATCGGGCACCAAGAGAATGTGACGACGCCACAGAGGAGAGGTTGG GCTGGCGTCGTCGAGGAGTTACAGACCTCGCCGCGGATGCAGCGTCGACATGCATCGCTCGAACAGACCACTATG CGTTCGTGA |