© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00762 |
| Gene name | |
| Location | scaffold_01:2905398..2906686 |
| Strand | - |
| Gene length (bp) | 1288 |
| Transcript length (bp) | 1170 |
| Coding sequence length (bp) | 1170 |
| Protein length (aa) | 390 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01940 | DUF92 | Integral membrane protein DUF92 | 5.5E-85 | 9 | 368 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 58 | 19 |
| 2 | 183 | 205 | 22 |
| 3 | 230 | 252 | 22 |
| 4 | 359 | 381 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 166.31 | 92.47 | 240.15 |
| Alive | In ants, during behavior modification | 25.45 | 12.22 | 38.69 |
| Dead | In ants, recently dead | 40.59 | 21.73 | 59.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.008883 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00762 MKPILALPLTAALVLRAWKQKSLTPGGILAAALTALAHAYHPWNLPFVLLLVFFLAGTRVTHVKEKVKATLTQTS SGSSGGEGPRTHVQVFANSLMASMLSLMHAYQLRSRQAAFADADGRNPQGTKCFSWGGDVLVIGIIANYAAVAAD TFSSELGILASSQPRLITSLSLRKVPRGTNGGVTVEGLAAGLLGSMVIVTAAMLFLPTCSPETAAMPGGGVPWTV GQRRVLMGFLVVWGALGSLLDSFLGGLLQRSIRDVRSGKIIEGEGGNRVLVAAGSGRVAGGSVKRAEAKTAALSG QVGTTDGEVSVEESAVDDERDTTDRRALEGEHRRRGSFGDDGPSRIVESGLDILDNNDVNFLMASMMSIGAMAVA SWYWGLDVDSVTRI* |
| Coding | >Ophcf2|00762 ATGAAACCCATCTTGGCACTTCCGCTAACGGCAGCGCTCGTGCTGCGGGCGTGGAAGCAGAAGTCGCTCACGCCA GGCGGCATCTTGGCGGCCGCTCTGACGGCTCTCGCCCACGCCTATCACCCGTGGAACCTACCCTTTGTCCTCCTC CTCGTCTTCTTTCTCGCCGGGACGCGAGTGACGCATGTTAAGGAGAAGGTCAAGGCCACCCTGACCCAGACCTCG AGCGGCAGTTCAGGGGGCGAAGGGCCTCGAACCCATGTTCAAGTCTTCGCCAACTCCCTCATGGCATCGATGCTC TCCCTGATGCACGCCTATCAACTCCGTTCAAGGCAAGCTGCATTCGCCGACGCCGACGGCCGCAACCCCCAAGGC ACGAAATGCTTCTCATGGGGCGGAGACGTGCTCGTCATCGGCATCATAGCCAACTACGCCGCAGTCGCAGCCGAC ACCTTCAGCTCGGAGCTCGGTATCCTAGCGAGCAGCCAGCCGCGGCTCATCACATCCCTGAGCCTGCGAAAGGTG CCCCGCGGCACCAATGGGGGCGTAACCGTGGAGGGGCTGGCCGCGGGCCTCCTCGGCTCCATGGTGATTGTAACG GCGGCGATGCTCTTTCTGCCCACGTGCAGTCCCGAGACGGCAGCCATGCCAGGCGGCGGCGTGCCGTGGACGGTG GGGCAGCGCAGGGTGTTGATGGGCTTCCTGGTGGTCTGGGGCGCGCTTGGCAGCCTGCTCGACAGCTTCCTTGGT GGGCTCCTCCAGCGCTCGATCAGGGACGTGCGCTCGGGAAAGATTATTGAGGGCGAGGGTGGCAACCGAGTCCTG GTCGCGGCAGGGTCGGGGCGGGTCGCCGGGGGTTCGGTAAAGCGTGCCGAGGCGAAGACAGCGGCGCTCAGTGGA CAGGTTGGGACGACGGACGGGGAGGTTTCAGTGGAGGAGTCTGCCGTGGACGATGAGCGCGACACGACGGACAGA CGGGCGCTGGAGGGCGAGCACCGGCGCAGAGGAAGCTTCGGGGACGACGGCCCATCTCGGATCGTGGAGAGCGGG CTCGACATACTGGACAACAACGACGTCAATTTCCTCATGGCGTCGATGATGAGCATCGGAGCGATGGCGGTGGCG AGCTGGTACTGGGGGCTGGACGTTGACAGTGTCACGAGAATCTGA |
| Transcript | >Ophcf2|00762 ATGAAACCCATCTTGGCACTTCCGCTAACGGCAGCGCTCGTGCTGCGGGCGTGGAAGCAGAAGTCGCTCACGCCA GGCGGCATCTTGGCGGCCGCTCTGACGGCTCTCGCCCACGCCTATCACCCGTGGAACCTACCCTTTGTCCTCCTC CTCGTCTTCTTTCTCGCCGGGACGCGAGTGACGCATGTTAAGGAGAAGGTCAAGGCCACCCTGACCCAGACCTCG AGCGGCAGTTCAGGGGGCGAAGGGCCTCGAACCCATGTTCAAGTCTTCGCCAACTCCCTCATGGCATCGATGCTC TCCCTGATGCACGCCTATCAACTCCGTTCAAGGCAAGCTGCATTCGCCGACGCCGACGGCCGCAACCCCCAAGGC ACGAAATGCTTCTCATGGGGCGGAGACGTGCTCGTCATCGGCATCATAGCCAACTACGCCGCAGTCGCAGCCGAC ACCTTCAGCTCGGAGCTCGGTATCCTAGCGAGCAGCCAGCCGCGGCTCATCACATCCCTGAGCCTGCGAAAGGTG CCCCGCGGCACCAATGGGGGCGTAACCGTGGAGGGGCTGGCCGCGGGCCTCCTCGGCTCCATGGTGATTGTAACG GCGGCGATGCTCTTTCTGCCCACGTGCAGTCCCGAGACGGCAGCCATGCCAGGCGGCGGCGTGCCGTGGACGGTG GGGCAGCGCAGGGTGTTGATGGGCTTCCTGGTGGTCTGGGGCGCGCTTGGCAGCCTGCTCGACAGCTTCCTTGGT GGGCTCCTCCAGCGCTCGATCAGGGACGTGCGCTCGGGAAAGATTATTGAGGGCGAGGGTGGCAACCGAGTCCTG GTCGCGGCAGGGTCGGGGCGGGTCGCCGGGGGTTCGGTAAAGCGTGCCGAGGCGAAGACAGCGGCGCTCAGTGGA CAGGTTGGGACGACGGACGGGGAGGTTTCAGTGGAGGAGTCTGCCGTGGACGATGAGCGCGACACGACGGACAGA CGGGCGCTGGAGGGCGAGCACCGGCGCAGAGGAAGCTTCGGGGACGACGGCCCATCTCGGATCGTGGAGAGCGGG CTCGACATACTGGACAACAACGACGTCAATTTCCTCATGGCGTCGATGATGAGCATCGGAGCGATGGCGGTGGCG AGCTGGTACTGGGGGCTGGACGTTGACAGTGTCACGAGAATCTGA |
| Gene | >Ophcf2|00762 ATGAAACCCATCTTGGCACTTCCGCTAACGGCAGCGCTCGTGCTGCGGGCGTGGAAGCAGAAGTCGCTCACGCCA GGCGGCATCTTGGCGGCCGCTCTGACGGCTCTCGCCCACGCCTATCACCCGTGGAACCTACCCTTTGTCCTCCTC CTCGTCTTCTTTCTCGCCGGGACGCGAGTGACGCATGTATGTACAGTCGTCGTCCAGTCGTTACCGGTCAGGTGG TCGCTGACGTGACATTTCCCAGGTTAAGGAGAAGGTCAAGGCCACCCTGACCCAGACCTCGAGCGGCAGTTCAGG GGGCGAAGGGCCTCGAACCCATGTTCAAGGTGTGTTGATCCGTGCTCGCCGCTGCAGCTTTCAGGTGGCTCACGC AACGGTTCCAGTCTTCGCCAACTCCCTCATGGCATCGATGCTCTCCCTGATGCACGCCTATCAACTCCGTTCAAG GCAAGCTGCATTCGCCGACGCCGACGGCCGCAACCCCCAAGGCACGAAATGCTTCTCATGGGGCGGAGACGTGCT CGTCATCGGCATCATAGCCAACTACGCCGCAGTCGCAGCCGACACCTTCAGCTCGGAGCTCGGTATCCTAGCGAG CAGCCAGCCGCGGCTCATCACATCCCTGAGCCTGCGAAAGGTGCCCCGCGGCACCAATGGGGGCGTAACCGTGGA GGGGCTGGCCGCGGGCCTCCTCGGCTCCATGGTGATTGTAACGGCGGCGATGCTCTTTCTGCCCACGTGCAGTCC CGAGACGGCAGCCATGCCAGGCGGCGGCGTGCCGTGGACGGTGGGGCAGCGCAGGGTGTTGATGGGCTTCCTGGT GGTCTGGGGCGCGCTTGGCAGCCTGCTCGACAGCTTCCTTGGTGGGCTCCTCCAGCGCTCGATCAGGGACGTGCG CTCGGGAAAGATTATTGAGGGCGAGGGTGGCAACCGAGTCCTGGTCGCGGCAGGGTCGGGGCGGGTCGCCGGGGG TTCGGTAAAGCGTGCCGAGGCGAAGACAGCGGCGCTCAGTGGACAGGTTGGGACGACGGACGGGGAGGTTTCAGT GGAGGAGTCTGCCGTGGACGATGAGCGCGACACGACGGACAGACGGGCGCTGGAGGGCGAGCACCGGCGCAGAGG AAGCTTCGGGGACGACGGCCCATCTCGGATCGTGGAGAGCGGGCTCGACATACTGGACAACAACGACGTCAATTT CCTCATGGCGTCGATGATGAGCATCGGAGCGATGGCGGTGGCGAGCTGGTACTGGGGGCTGGACGTTGACAGTGT CACGAGAATCTGA |