Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00754
Gene name
Locationscaffold_01:2874678..2875231
Strand+
Gene length (bp)553
Transcript length (bp)426
Coding sequence length (bp)426
Protein length (aa) 142

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10639 TMEM234 Putative transmembrane family 234 4.1E-32 15 137

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 10 29 19
2 68 87 19
3 91 113 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00754
MASSPPPTINYILSFILVGLAWGLTTPFIRRAALRRQPRPALPSDASRGRRLAACCLSVVDFVRDPRYALPLLLN
LSGSVWFFLLVGRAELSLTVPIVNTLAFIFTVLGEWLVEGKVVSKRTASGVVLSLAGIALCVQSKT*
Coding >Ophcf2|00754
ATGGCGTCCTCCCCGCCCCCGACCATCAACTACATCCTCTCCTTCATCCTCGTCGGACTCGCCTGGGGTCTGACG
ACGCCATTCATCCGCCGCGCCGCCCTCCGCCGCCAGCCGCGCCCAGCCCTTCCCTCGGATGCCTCGCGGGGGCGA
CGGCTGGCGGCCTGCTGCCTGAGCGTCGTCGACTTTGTGCGCGATCCGCGGTATGCGCTGCCGCTGCTGTTGAAT
CTTTCCGGCAGTGTGTGGTTCTTCCTGCTCGTTGGTCGTGCTGAGCTGAGCTTGACGGTTCCCATCGTCAATACC
CTCGCTTTCATTTTTACTGTCTTGGGCGAGTGGCTCGTAGAGGGCAAGGTTGTTAGCAAACGCACGGCATCAGGA
GTCGTGTTATCCCTCGCCGGGATTGCATTGTGTGTTCAAAGCAAGACTTAG
Transcript >Ophcf2|00754
ATGGCGTCCTCCCCGCCCCCGACCATCAACTACATCCTCTCCTTCATCCTCGTCGGACTCGCCTGGGGTCTGACG
ACGCCATTCATCCGCCGCGCCGCCCTCCGCCGCCAGCCGCGCCCAGCCCTTCCCTCGGATGCCTCGCGGGGGCGA
CGGCTGGCGGCCTGCTGCCTGAGCGTCGTCGACTTTGTGCGCGATCCGCGGTATGCGCTGCCGCTGCTGTTGAAT
CTTTCCGGCAGTGTGTGGTTCTTCCTGCTCGTTGGTCGTGCTGAGCTGAGCTTGACGGTTCCCATCGTCAATACC
CTCGCTTTCATTTTTACTGTCTTGGGCGAGTGGCTCGTAGAGGGCAAGGTTGTTAGCAAACGCACGGCATCAGGA
GTCGTGTTATCCCTCGCCGGGATTGCATTGTGTGTTCAAAGCAAGACTTAG
Gene >Ophcf2|00754
ATGGCGTCCTCCCCGCCCCCGACCATCAACTACATCCTCTCCTTCATCCTCGTCGGACTCGCCTGGGGTCTGACG
ACGCCATTCATCCGCCGCGCCGCCCTCCGCCGCCAGCCGCGCCCAGCCCTTCCCTCGGATGCCTCGCGGGGGCGA
CGGCTGGCGGCCTGCTGCCTGAGCGTCGTCGACTTTGTGCGCGATCCGCGGTATGCGCTGCCGCTGCTGTTGAAT
CTTTCCGGCAGTGTGTGGTTCTTCCTGCTCGTTGGTCGTGCTGGTTTGTTGTTCGTGTCACCTTGGACGTCGACG
TGTGCTGATTGATTCCTTGTGGGTGTAGAGCTGAGCTTGACGGTTCCCATCGTCAATACCCTCGCTTTCATTTTT
ACTGTCTTGGGCGAGTGGCTCGTAGAGGGCAAGGTTGTTAGCAAACGTCAGCTTGAGATGCCCTTTCCGCCCCTT
TCGTCTCTCTTTGCTGACCCTTGACTTGCACGCCTCAGGCACGGCATCAGGAGTCGTGTTATCCCTCGCCGGGAT
TGCATTGTGTGTTCAAAGCAAGACTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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