© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00749 |
| Gene name | |
| Location | scaffold_01:2867045..2867691 |
| Strand | - |
| Gene length (bp) | 646 |
| Transcript length (bp) | 597 |
| Coding sequence length (bp) | 597 |
| Protein length (aa) | 199 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 84 | 106 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 155 | 177 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 129.77 | 71.79 | 187.76 |
| Alive | In ants, during behavior modification | 105.63 | 55.81 | 155.44 |
| Dead | In ants, recently dead | 100.48 | 53.53 | 147.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.343962 | no |
| Alive | Dead | 0.822672 | no |
| Dead | Fungus | 0.219641 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00749 MTRVSIYASALAAFVAATAMLVASIAAPNWIVYAVTTAKGDHVGKTIGLNRSCSDLSTPRCREYPPAEMCENGAR YFCSLWRTIGFMASLSTILCLACLTSFFVVLRGGKFKRETGWVFVAGMLTVVAVFELVLISMVAYLFDHDEQFGV PGWHLGVSWYLATFSAVVCVLSAAGLVASAYLMPPEGGYESVPDPDDG* |
| Coding | >Ophcf2|00749 ATGACGCGCGTTTCCATCTACGCCTCTGCCCTCGCTGCCTTTGTGGCCGCGACGGCCATGCTCGTTGCTTCTATC GCAGCACCCAACTGGATTGTCTACGCTGTCACGACGGCCAAGGGCGATCATGTCGGCAAGACGATTGGGTTGAAC AGGAGCTGCTCCGATCTCAGCACGCCGCGTTGTCGCGAGTACCCCCCGGCCGAGATGTGCGAAAACGGAGCTCGA TATTTTTGCTCGTTGTGGCGCACCATCGGCTTCATGGCTTCGCTGTCGACCATCCTGTGTCTTGCTTGCCTGACG AGCTTCTTCGTTGTGCTGCGGGGCGGCAAGTTTAAGCGCGAGACGGGCTGGGTGTTTGTTGCTGGCATGTTGACT GTCGTGGCTGTCTTTGAGTTGGTGCTCATCTCCATGGTTGCCTATCTGTTTGACCACGATGAGCAGTTTGGTGTT CCGGGTTGGCATCTTGGTGTTTCGTGGTATCTTGCTACCTTTAGCGCTGTGGTTTGCGTCCTCTCTGCTGCTGGG CTGGTGGCTTCGGCGTATCTGATGCCGCCTGAGGGGGGTTACGAATCGGTGCCGGATCCTGACGACGGCTGA |
| Transcript | >Ophcf2|00749 ATGACGCGCGTTTCCATCTACGCCTCTGCCCTCGCTGCCTTTGTGGCCGCGACGGCCATGCTCGTTGCTTCTATC GCAGCACCCAACTGGATTGTCTACGCTGTCACGACGGCCAAGGGCGATCATGTCGGCAAGACGATTGGGTTGAAC AGGAGCTGCTCCGATCTCAGCACGCCGCGTTGTCGCGAGTACCCCCCGGCCGAGATGTGCGAAAACGGAGCTCGA TATTTTTGCTCGTTGTGGCGCACCATCGGCTTCATGGCTTCGCTGTCGACCATCCTGTGTCTTGCTTGCCTGACG AGCTTCTTCGTTGTGCTGCGGGGCGGCAAGTTTAAGCGCGAGACGGGCTGGGTGTTTGTTGCTGGCATGTTGACT GTCGTGGCTGTCTTTGAGTTGGTGCTCATCTCCATGGTTGCCTATCTGTTTGACCACGATGAGCAGTTTGGTGTT CCGGGTTGGCATCTTGGTGTTTCGTGGTATCTTGCTACCTTTAGCGCTGTGGTTTGCGTCCTCTCTGCTGCTGGG CTGGTGGCTTCGGCGTATCTGATGCCGCCTGAGGGGGGTTACGAATCGGTGCCGGATCCTGACGACGGCTGA |
| Gene | >Ophcf2|00749 ATGACGCGCGTTTCCATCTACGCCTCTGCCCTCGCTGCCTTTGTGGCCGGTTCGTCTTCTCCCGCCTTGACCGAG AAGTAGCTAGCTGACGAAAGCAGCGACGGCCATGCTCGTTGCTTCTATCGCAGCACCCAACTGGATTGTCTACGC TGTCACGACGGCCAAGGGCGATCATGTCGGCAAGACGATTGGGTTGAACAGGAGCTGCTCCGATCTCAGCACGCC GCGTTGTCGCGAGTACCCCCCGGCCGAGATGTGCGAAAACGGAGCTCGATATTTTTGCTCGTTGTGGCGCACCAT CGGCTTCATGGCTTCGCTGTCGACCATCCTGTGTCTTGCTTGCCTGACGAGCTTCTTCGTTGTGCTGCGGGGCGG CAAGTTTAAGCGCGAGACGGGCTGGGTGTTTGTTGCTGGCATGTTGACTGTCGTGGCTGTCTTTGAGTTGGTGCT CATCTCCATGGTTGCCTATCTGTTTGACCACGATGAGCAGTTTGGTGTTCCGGGTTGGCATCTTGGTGTTTCGTG GTATCTTGCTACCTTTAGCGCTGTGGTTTGCGTCCTCTCTGCTGCTGGGCTGGTGGCTTCGGCGTATCTGATGCC GCCTGAGGGGGGTTACGAATCGGTGCCGGATCCTGACGACGGCTGA |