© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00731 |
| Gene name | |
| Location | scaffold_01:2744166..2746089 |
| Strand | + |
| Gene length (bp) | 1923 |
| Transcript length (bp) | 1689 |
| Coding sequence length (bp) | 1689 |
| Protein length (aa) | 563 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01222 | ERG4_ERG24 | Ergosterol biosynthesis ERG4/ERG24 family | 7.3E-137 | 127 | 561 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | Yes |
| GO:0016020 | membrane | Yes |
| GO:0016126 | sterol biosynthetic process | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006694 | steroid biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:1901615 | organic hydroxy compound metabolic process | No |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | No |
| GO:0016125 | sterol metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901617 | organic hydroxy compound biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 130 | 152 | 22 |
| 2 | 192 | 214 | 22 |
| 3 | 227 | 249 | 22 |
| 4 | 264 | 286 | 22 |
| 5 | 345 | 364 | 19 |
| 6 | 384 | 406 | 22 |
| 7 | 419 | 436 | 17 |
| 8 | 501 | 523 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 64.94 | 37.36 | 92.52 |
| Alive | In ants, during behavior modification | 121.61 | 61.71 | 181.52 |
| Dead | In ants, recently dead | 142.32 | 75.54 | 209.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.001226 | yes |
| Alive | Dead | 0.416460 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00731 MSRYSLRQNPRKMVIEGMVPTPGTRRQSRRKPSFPLEDVDNDSSSAAETSTRARSLRSRRTASRQKAEDDTGEDD GLSNGTRTDTGASDDTPTRPRKRVVSSRTKPAERVVDGWKPGQDPKLDLSGEFEFGGSIGTATMMLLFPLLMWYM WIGATYFDGKLPVPTPDQTWLQFGAEMAGLVYAGAFPHAAAWFWYWSYLAFQAACYCLLPGVWGSGKPLPHEGGR QLTYFCNAYASLYLTLAVLAVLHFSGLWPLYLALDHFGPLLSVAIISGFLVSVVAYVSAIYRGKQHRMTGHVIYD FFMGAELNPRMFGILDFKMFCEVRMPWYMLLILSLGAAARQYDRYGYVSAEVLFLVMAHYLYANACAKGEELIVT TWDMYYEKWGFMLIFWNLAGVPLSYCHCTIYLANHDPSEYRWNRWALAALYLAYLFWYWVWDSCNSQKNRFRAME SGRLISRNTFPQVPWQTLHEPETIVSPQGTILVDGWYGLARKIHYTADVWFALSWGLITGFKSPFPWFYPVFFCC MIAHRASRDIHRCRIKYGDAWLEYERRVPYLFIPYVI* |
| Coding | >Ophcf2|00731 ATGTCGAGATACTCGCTGCGCCAGAACCCGAGAAAGATGGTCATAGAAGGCATGGTCCCGACGCCAGGAACGCGT CGCCAATCGCGTCGCAAGCCCTCTTTCCCGCTCGAAGATGTCGACAATGACTCGAGCTCGGCGGCTGAGACGTCG ACGCGTGCCCGTTCCCTTCGCAGCCGCCGTACGGCCTCTCGACAGAAGGCCGAGGATGATACTGGCGAGGACGAT GGCTTGTCCAATGGCACCAGGACAGATACAGGCGCGTCCGACGACACTCCGACGCGGCCCAGGAAGCGCGTCGTC TCTTCACGAACGAAGCCGGCGGAACGCGTCGTCGACGGCTGGAAGCCCGGCCAGGACCCCAAGCTCGACCTCTCT GGCGAATTCGAGTTCGGAGGCTCGATAGGGACGGCTACCATGATGTTGCTCTTCCCCCTTCTCATGTGGTATATG TGGATCGGAGCCACATACTTCGACGGCAAGCTTCCCGTCCCCACGCCCGACCAGACCTGGCTCCAGTTCGGCGCA GAGATGGCCGGTCTCGTCTACGCCGGCGCGTTCCCTCATGCCGCCGCCTGGTTCTGGTACTGGTCATATCTCGCC TTTCAGGCCGCCTGTTACTGTCTGCTTCCCGGCGTCTGGGGTTCCGGCAAGCCTCTTCCTCACGAGGGCGGCAGA CAACTGACGTACTTTTGCAACGCCTACGCCAGCCTATACTTGACTCTCGCCGTCCTCGCCGTCTTACACTTCTCC GGCCTCTGGCCACTGTATCTTGCTCTCGATCACTTTGGCCCTCTGCTGTCCGTCGCCATCATCAGTGGCTTCCTC GTCAGCGTCGTCGCCTACGTCTCGGCCATATACAGGGGCAAGCAGCACCGCATGACGGGTCATGTCATCTACGAC TTCTTCATGGGCGCCGAGCTCAACCCGCGCATGTTTGGCATCCTCGACTTCAAGATGTTTTGCGAGGTCCGCATG CCTTGGTACATGCTGCTCATCCTCAGCCTCGGCGCTGCCGCCCGTCAGTACGACCGCTACGGCTACGTCTCCGCT GAAGTGCTCTTCCTCGTCATGGCTCACTACCTCTACGCCAACGCCTGCGCCAAGGGAGAGGAGCTCATCGTCACC ACCTGGGACATGTACTACGAGAAATGGGGCTTCATGCTCATCTTCTGGAACCTCGCCGGCGTCCCGCTCTCGTAC TGCCACTGCACCATCTACCTCGCTAACCACGACCCGTCCGAGTACCGCTGGAACCGCTGGGCCTTGGCTGCCCTC TACCTCGCCTACCTCTTCTGGTACTGGGTCTGGGACAGCTGCAACAGTCAGAAGAACCGTTTCCGCGCCATGGAG AGCGGCCGTCTCATCAGCCGCAACACCTTCCCCCAGGTGCCGTGGCAGACGCTCCACGAACCCGAGACGATCGTG TCGCCGCAGGGCACCATCCTCGTTGACGGATGGTACGGCCTGGCGCGCAAGATTCACTACACCGCCGACGTCTGG TTCGCCCTCTCGTGGGGGCTGATAACGGGCTTCAAGAGCCCGTTCCCGTGGTTCTATCCCGTCTTCTTTTGCTGC ATGATCGCTCACCGCGCCTCGCGAGACATCCATCGCTGTCGCATCAAGTACGGCGATGCCTGGCTCGAGTACGAG CGAAGAGTCCCATATCTGTTCATTCCCTACGTCATATAG |
| Transcript | >Ophcf2|00731 ATGTCGAGATACTCGCTGCGCCAGAACCCGAGAAAGATGGTCATAGAAGGCATGGTCCCGACGCCAGGAACGCGT CGCCAATCGCGTCGCAAGCCCTCTTTCCCGCTCGAAGATGTCGACAATGACTCGAGCTCGGCGGCTGAGACGTCG ACGCGTGCCCGTTCCCTTCGCAGCCGCCGTACGGCCTCTCGACAGAAGGCCGAGGATGATACTGGCGAGGACGAT GGCTTGTCCAATGGCACCAGGACAGATACAGGCGCGTCCGACGACACTCCGACGCGGCCCAGGAAGCGCGTCGTC TCTTCACGAACGAAGCCGGCGGAACGCGTCGTCGACGGCTGGAAGCCCGGCCAGGACCCCAAGCTCGACCTCTCT GGCGAATTCGAGTTCGGAGGCTCGATAGGGACGGCTACCATGATGTTGCTCTTCCCCCTTCTCATGTGGTATATG TGGATCGGAGCCACATACTTCGACGGCAAGCTTCCCGTCCCCACGCCCGACCAGACCTGGCTCCAGTTCGGCGCA GAGATGGCCGGTCTCGTCTACGCCGGCGCGTTCCCTCATGCCGCCGCCTGGTTCTGGTACTGGTCATATCTCGCC TTTCAGGCCGCCTGTTACTGTCTGCTTCCCGGCGTCTGGGGTTCCGGCAAGCCTCTTCCTCACGAGGGCGGCAGA CAACTGACGTACTTTTGCAACGCCTACGCCAGCCTATACTTGACTCTCGCCGTCCTCGCCGTCTTACACTTCTCC GGCCTCTGGCCACTGTATCTTGCTCTCGATCACTTTGGCCCTCTGCTGTCCGTCGCCATCATCAGTGGCTTCCTC GTCAGCGTCGTCGCCTACGTCTCGGCCATATACAGGGGCAAGCAGCACCGCATGACGGGTCATGTCATCTACGAC TTCTTCATGGGCGCCGAGCTCAACCCGCGCATGTTTGGCATCCTCGACTTCAAGATGTTTTGCGAGGTCCGCATG CCTTGGTACATGCTGCTCATCCTCAGCCTCGGCGCTGCCGCCCGTCAGTACGACCGCTACGGCTACGTCTCCGCT GAAGTGCTCTTCCTCGTCATGGCTCACTACCTCTACGCCAACGCCTGCGCCAAGGGAGAGGAGCTCATCGTCACC ACCTGGGACATGTACTACGAGAAATGGGGCTTCATGCTCATCTTCTGGAACCTCGCCGGCGTCCCGCTCTCGTAC TGCCACTGCACCATCTACCTCGCTAACCACGACCCGTCCGAGTACCGCTGGAACCGCTGGGCCTTGGCTGCCCTC TACCTCGCCTACCTCTTCTGGTACTGGGTCTGGGACAGCTGCAACAGTCAGAAGAACCGTTTCCGCGCCATGGAG AGCGGCCGTCTCATCAGCCGCAACACCTTCCCCCAGGTGCCGTGGCAGACGCTCCACGAACCCGAGACGATCGTG TCGCCGCAGGGCACCATCCTCGTTGACGGATGGTACGGCCTGGCGCGCAAGATTCACTACACCGCCGACGTCTGG TTCGCCCTCTCGTGGGGGCTGATAACGGGCTTCAAGAGCCCGTTCCCGTGGTTCTATCCCGTCTTCTTTTGCTGC ATGATCGCTCACCGCGCCTCGCGAGACATCCATCGCTGTCGCATCAAGTACGGCGATGCCTGGCTCGAGTACGAG CGAAGAGTCCCATATCTGTTCATTCCCTACGTCATATAG |
| Gene | >Ophcf2|00731 ATGTCGAGATACTCGCTGCGCCAGAACCCGAGGTAATGCGGTCAACAGACCATATATGGCGCGTCTGACGCTTTC TCTAGAAAGATGGTCATAGAAGGCATGGTCCCGACGCCAGGAACGCGTCGCCAATCGCGTCGCAAGCCCTCTTTC CCGCTCGAAGATGTCGACAATGACTCGAGCTCGGCGGCTGAGACGTCGACGCGTGCCCGTTCCCTTCGCAGCCGC CGTACGGCCTCTCGACAGAAGGCCGAGGATGATACTGGCGAGGACGATGGCTTGTCCAATGGCACCAGGACAGAT ACAGGCGCGTCCGACGACACTCCGACGCGGCCCAGGAAGCGCGTCGTCTCTTCACGAACGAAGCCGGCGGAACGC GTCGTCGACGGCTGGAAGCCCGGCCAGGACCCCAAGCTCGACCTCTCTGGCGAATTCGAGTTCGGAGGCTCGATA GGGACGGCTACCATGATGTTGCTCTTCCCCCTTCTCATGTGGTATATGTGGATCGGAGCCACATACTTCGACGGC AAGCTTCCCGTCCCCACGCCCGACCAGACCTGGCTCCAGTTCGGCGCAGAGATGGCCGGTCTCGTCTACGCCGGC GCGTTCCCTCATGCCGCCGCCTGGTTCTGGTACTGGTCATATCTCGCCTTTCAGGCCGCCTGTTACTGTCTGCTT CCCGGCGTCTGGGGTTCCGGCAAGCCTCTTCCTCACGAGGGCGGCAGACAACTGACGTACTTTTGCAACGCCTAC GCCAGCCTATACTTGACTCTCGCCGTCCTCGCCGTCTTACACTTCTCCGGCCTCTGGCCACTGTATCTTGCTCTC GATCACTTTGGCCCTCTGCTGTCCGTCGCCATCATCAGTGGCTTCCTCGTCAGCGTCGTCGCCTACGTCTCGGCC ATATACAGGGGCAAGCAGCACCGCATGACGGGTCATGTCATCTACGACTTCTTCATGGGCGCCGAGCTCAACCCG CGCATGTTTGGCATCCTCGACTTCAAGATGTTTTGCGAGGTCCGCATGCCTTGGTACATGCTGCTCATCCTCAGC CTCGGCGCTGCCGCCCGTCAGTACGACCGCTACGGCTACGTCTCCGCTGAAGTGCTCTTCCTCGTCATGGCTCAC TACCTCTACGCCAACGCCTGCGCCAAGGGAGAGGAGCTCATCGTCACCACCTGGTGAGCCGTTCCCTCTCCTGCC TCGCACATATCAGGGCTGACATGCTCGCCAGGGACATGTACTACGAGAAATGGGGCTTCATGCTCATCTTCTGGA ACCTCGCCGGCGTCCCGCTCTCGTACTGCCACTGCACCATCTACCTCGCTAACCACGACCCGTCCGAGTACCGCT GGAACCGCTGGGCCTTGGCTGCCCTCTACCTCGCCTACCTCTTCTGGTACTGGGTCTGGGACAGCTGCAACAGTC AGAAGAACCGTTTCCGCGCCATGGAGAGCGGCCGTCTCATCAGCCGCAACACCTTCCCCCAGGTGCCGTGGCAGA CGCTCCACGAACCCGAGACGATCGTGTCGCCGCAGGGCACCATCCTCGTTGACGGATGGTACGGCCTGGCGCGCA AGATTCACTACACCGCCGACGTCTGGTTCGCCCTCTCGTGGGGGCTGATAACGGGCTTCAAGTGTGTAGTCTTCC CTTTTAGTTTTCCTCCGTCCAGCTCGCTAAAGCTTTGGCACCGATAGGAGCCCGTTCCCGTGGTTCTATCCCGTC TTCTTTTGCTGCATGATCGCTCACCGCGCCTCGCGAGACATCCATCGCTGTCGCATCAAGTACGGCGATGCCTGG CTCGAGTACGAGCGAAGAGTCCCATATCTGTTCATTCCCGTGAGTTCAAGTCCTCCTCGACAAGACGTATCCCCT GATCATGGTGCTGAAATCCCTTCCACTTTCATGCAGTACGTCATATAG |