Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|00710
Gene name
Location	scaffold_01:2694258..2695080
Strand	+
Gene length (bp)	822
Transcript length (bp)	759
Coding sequence length (bp)	759
Protein length (aa)	253

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00226	DnaJ	DnaJ domain	4.1E-18	27	88

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	220	242	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	57.86	29.89	85.84
Alive	In ants, during behavior modification	86.84	47.82	125.87
Dead	In ants, recently dead	82.05	44.80	119.31

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.047232	yes
Alive	Dead	0.794822	no
Dead	Fungus	0.088957	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|00710 MTPIITARPTLYRSIRLLHTSPPKATDLYARLGVKRDASAAEIKRSFYALSKTHHPDVNPSPTASSSFSLLADAY AILSDPPRRAAYDATLPAAFPPPPRRRPPGPFRGPAPSFYRNGGWGIHASVRRRAHQESTGFAARVRASRRGRGD DGDGGKGGRKQPGMGPGQEPLSERAGNLNFDWEGHARTHKREDHRRWERMRRAVDEDGTEFEPQLSLAGNFCVLA AILGVALGGPFVYLYVLRYKRRRRDLD*
Coding	>Ophcf2\|00710 ATGACCCCCATCATCACCGCAAGACCAACCCTCTACCGCTCAATCCGCCTCCTCCACACCTCCCCCCCGAAAGCC ACCGATCTATACGCCCGTCTAGGCGTCAAACGCGATGCCTCCGCCGCCGAGATCAAACGATCCTTCTACGCCCTC TCCAAAACCCACCATCCAGACGTGAACCCTTCCCCCACCGCATCCTCCTCCTTCTCCCTCCTGGCAGACGCCTAC GCCATCCTCTCCGACCCCCCCCGTCGCGCAGCCTACGACGCCACCCTCCCAGCAGCCTTCCCACCCCCCCCCCGT CGAAGACCTCCGGGGCCCTTCCGCGGACCGGCTCCGAGCTTCTACCGTAACGGCGGGTGGGGCATCCACGCTTCG GTTCGGCGGCGCGCCCATCAGGAATCTACGGGGTTCGCAGCTCGGGTGCGCGCCTCTCGACGGGGACGCGGTGAT GATGGCGATGGGGGGAAGGGCGGGCGGAAACAGCCTGGGATGGGACCCGGACAGGAGCCCTTGAGTGAGCGAGCT GGGAATTTGAATTTCGACTGGGAGGGTCATGCGCGGACGCATAAGAGGGAGGATCATCGTCGGTGGGAGCGGATG CGTCGTGCCGTTGATGAGGATGGCACCGAGTTTGAGCCGCAGCTGAGTCTTGCCGGTAATTTTTGCGTGCTTGCC GCTATATTGGGGGTTGCTCTTGGTGGGCCGTTCGTCTATCTGTATGTCTTGCGGTATAAACGCCGGAGGAGGGAT CTTGATTGA
Transcript	>Ophcf2\|00710 ATGACCCCCATCATCACCGCAAGACCAACCCTCTACCGCTCAATCCGCCTCCTCCACACCTCCCCCCCGAAAGCC ACCGATCTATACGCCCGTCTAGGCGTCAAACGCGATGCCTCCGCCGCCGAGATCAAACGATCCTTCTACGCCCTC TCCAAAACCCACCATCCAGACGTGAACCCTTCCCCCACCGCATCCTCCTCCTTCTCCCTCCTGGCAGACGCCTAC GCCATCCTCTCCGACCCCCCCCGTCGCGCAGCCTACGACGCCACCCTCCCAGCAGCCTTCCCACCCCCCCCCCGT CGAAGACCTCCGGGGCCCTTCCGCGGACCGGCTCCGAGCTTCTACCGTAACGGCGGGTGGGGCATCCACGCTTCG GTTCGGCGGCGCGCCCATCAGGAATCTACGGGGTTCGCAGCTCGGGTGCGCGCCTCTCGACGGGGACGCGGTGAT GATGGCGATGGGGGGAAGGGCGGGCGGAAACAGCCTGGGATGGGACCCGGACAGGAGCCCTTGAGTGAGCGAGCT GGGAATTTGAATTTCGACTGGGAGGGTCATGCGCGGACGCATAAGAGGGAGGATCATCGTCGGTGGGAGCGGATG CGTCGTGCCGTTGATGAGGATGGCACCGAGTTTGAGCCGCAGCTGAGTCTTGCCGGTAATTTTTGCGTGCTTGCC GCTATATTGGGGGTTGCTCTTGGTGGGCCGTTCGTCTATCTGTATGTCTTGCGGTATAAACGCCGGAGGAGGGAT CTTGATTGA
Gene	>Ophcf2\|00710 ATGACCCCCATCATCACCGCAAGACCAACCCTCTACCGCTCAATCCGCCTCCTCCACACCTCCCCCCCGAAAGCC ACCGATCTATACGCCCGTCTAGGCGTCAAACGCGATGCCTCCGCCGCCGAGATCAAACGGTCCGTCCTCTTCCAA TCCAACAAAAACAACCAACCACCATCTAACGAAACCGAAAAACCCAGATCCTTCTACGCCCTCTCCAAAACCCAC CATCCAGACGTGAACCCTTCCCCCACCGCATCCTCCTCCTTCTCCCTCCTGGCAGACGCCTACGCCATCCTCTCC GACCCCCCCCGTCGCGCAGCCTACGACGCCACCCTCCCAGCAGCCTTCCCACCCCCCCCCCGTCGAAGACCTCCG GGGCCCTTCCGCGGACCGGCTCCGAGCTTCTACCGTAACGGCGGGTGGGGCATCCACGCTTCGGTTCGGCGGCGC GCCCATCAGGAATCTACGGGGTTCGCAGCTCGGGTGCGCGCCTCTCGACGGGGACGCGGTGATGATGGCGATGGG GGGAAGGGCGGGCGGAAACAGCCTGGGATGGGACCCGGACAGGAGCCCTTGAGTGAGCGAGCTGGGAATTTGAAT TTCGACTGGGAGGGTCATGCGCGGACGCATAAGAGGGAGGATCATCGTCGGTGGGAGCGGATGCGTCGTGCCGTT GATGAGGATGGCACCGAGTTTGAGCCGCAGCTGAGTCTTGCCGGTAATTTTTGCGTGCTTGCCGCTATATTGGGG GTTGCTCTTGGTGGGCCGTTCGTCTATCTGTATGTCTTGCGGTATAAACGCCGGAGGAGGGATCTTGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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