Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00706
Gene name
Locationscaffold_01:2684252..2685274
Strand-
Gene length (bp)1022
Transcript length (bp)957
Coding sequence length (bp)957
Protein length (aa) 319

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00804 Syntaxin Syntaxin 1.2E-25 45 234
PF05739 SNARE SNARE domain 8.6E-14 237 287

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

Domain # Start End Length
1 275 297 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00706
MATGGYGHGYGENNPYAQDQYEMTDYGSPDKPETHTTTVLSQQAFLDRVQNLRDDIRQLTSDVDHIGQLHHRCLA
STDGSAQQQLEQAVVQTQIRNTAIKDGIKGLERDLSRTSDASRVIKRTQLQSLRTFFKAELDKYQAVERDYQIRY
REQIARQYRIVNPEASEDEVRQAAEADWGNEGVFQTALRTNRTGHATSLLGNVRARHNELQRIEQTLTEIAILYD
ELATLVEQQDPIIQSAEQNAQNTVDHMEKGNDQVKQANEHARRRRKLKWWCLLLVVLIIIGIALGVGLGLCLGTD
RCSKSKSSSSSSPSPSSS*
Coding >Ophcf2|00706
ATGGCCACGGGCGGCTATGGCCACGGCTACGGGGAAAACAACCCCTACGCCCAAGACCAGTACGAGATGACAGAC
TACGGCAGCCCGGATAAGCCCGAGACACACACGACAACAGTCCTCAGCCAGCAGGCCTTCCTCGACCGCGTGCAG
AATCTCCGCGACGACATCCGCCAACTGACGAGCGACGTCGACCACATCGGCCAGCTTCACCACCGCTGCCTCGCC
AGCACCGACGGCTCAGCCCAGCAGCAGCTCGAACAGGCCGTCGTCCAGACGCAGATCCGTAACACGGCCATCAAA
GACGGCATCAAGGGTCTTGAGCGCGACCTGTCACGCACCTCGGACGCATCGCGCGTCATCAAGCGTACCCAGCTC
CAATCACTGCGCACCTTCTTCAAGGCAGAGCTCGACAAGTATCAGGCCGTCGAGCGCGATTATCAAATTCGTTAT
CGCGAGCAGATCGCCCGCCAGTATCGCATCGTCAACCCGGAAGCCAGCGAGGATGAGGTCCGTCAGGCCGCCGAG
GCCGACTGGGGTAACGAGGGCGTCTTCCAGACAGCCCTGCGCACGAATCGTACCGGCCACGCAACCTCCCTCCTA
GGCAACGTCCGCGCCCGCCACAACGAACTCCAGCGTATCGAGCAGACGCTCACCGAAATAGCCATCTTATACGAC
GAGCTCGCCACCCTCGTCGAGCAACAAGACCCCATCATCCAATCGGCAGAGCAGAACGCGCAGAACACGGTCGAC
CACATGGAAAAGGGCAACGACCAGGTCAAGCAGGCCAACGAGCACGCCCGTCGCCGCCGCAAGCTCAAGTGGTGG
TGTCTCCTGCTCGTCGTTCTCATCATCATCGGCATCGCCCTCGGTGTCGGTCTCGGCCTGTGTCTCGGCACGGAC
CGCTGTAGCAAGTCGAAGTCGTCGTCGTCGTCGTCGCCGTCGCCGTCGTCATCATAA
Transcript >Ophcf2|00706
ATGGCCACGGGCGGCTATGGCCACGGCTACGGGGAAAACAACCCCTACGCCCAAGACCAGTACGAGATGACAGAC
TACGGCAGCCCGGATAAGCCCGAGACACACACGACAACAGTCCTCAGCCAGCAGGCCTTCCTCGACCGCGTGCAG
AATCTCCGCGACGACATCCGCCAACTGACGAGCGACGTCGACCACATCGGCCAGCTTCACCACCGCTGCCTCGCC
AGCACCGACGGCTCAGCCCAGCAGCAGCTCGAACAGGCCGTCGTCCAGACGCAGATCCGTAACACGGCCATCAAA
GACGGCATCAAGGGTCTTGAGCGCGACCTGTCACGCACCTCGGACGCATCGCGCGTCATCAAGCGTACCCAGCTC
CAATCACTGCGCACCTTCTTCAAGGCAGAGCTCGACAAGTATCAGGCCGTCGAGCGCGATTATCAAATTCGTTAT
CGCGAGCAGATCGCCCGCCAGTATCGCATCGTCAACCCGGAAGCCAGCGAGGATGAGGTCCGTCAGGCCGCCGAG
GCCGACTGGGGTAACGAGGGCGTCTTCCAGACAGCCCTGCGCACGAATCGTACCGGCCACGCAACCTCCCTCCTA
GGCAACGTCCGCGCCCGCCACAACGAACTCCAGCGTATCGAGCAGACGCTCACCGAAATAGCCATCTTATACGAC
GAGCTCGCCACCCTCGTCGAGCAACAAGACCCCATCATCCAATCGGCAGAGCAGAACGCGCAGAACACGGTCGAC
CACATGGAAAAGGGCAACGACCAGGTCAAGCAGGCCAACGAGCACGCCCGTCGCCGCCGCAAGCTCAAGTGGTGG
TGTCTCCTGCTCGTCGTTCTCATCATCATCGGCATCGCCCTCGGTGTCGGTCTCGGCCTGTGTCTCGGCACGGAC
CGCTGTAGCAAGTCGAAGTCGTCGTCGTCGTCGTCGCCGTCGCCGTCGTCATCATAA
Gene >Ophcf2|00706
ATGGCCACGGGCGGCTATGGCCACGGCTACGGGGAAAACAACCCCTACGCCCAAGACCAGTACGAGATGACAGAC
TACGGCAGCCCGGATAAGCCCGAGACACACACGACAACAGTCCTCAGCCAGCAGGCCTTCCTCGACCGCGTGCAG
AATCTCCGCGACGACATCCGCCAACTGACGAGCGACGTCGACCACATCGGCCAGCTTCACCACCGCTGCCTCGCC
AGCACCGACGGCTCAGCCCAGCAGCAGCTCGAACAGGCCGTCGTCCAGACGCAGATCCGTAACACGGCCATCAAA
GACGGCATCAAGGGTCTTGAGCGCGACCTGTCACGCACCTCGGACGCATCGCGCGTCATCAAGCGTACCCAGCTC
CAATCACTGCGCACCTTCTTCAAGGCAGAGCTCGACAAGTATCAGGCCGTCGAGCGCGATTATCAAATTCGTTAT
CGCGAGCAGATCGCCCGCCAGTATCGCATCGTCAACCCGGAAGCCAGCGAGGATGAGGTCCGTCAGGCCGCCGAG
GCCGACTGGGGTAACGAGGGCGTCTTCCAGACAGCCGTACGTCTTTTCTTTCCCCTTGACCATGTGCCCACCAGC
AACAAAAACTGATGACATCTCGCCAGCTGCGCACGAATCGTACCGGCCACGCAACCTCCCTCCTAGGCAACGTCC
GCGCCCGCCACAACGAACTCCAGCGTATCGAGCAGACGCTCACCGAAATAGCCATCTTATACGACGAGCTCGCCA
CCCTCGTCGAGCAACAAGACCCCATCATCCAATCGGCAGAGCAGAACGCGCAGAACACGGTCGACCACATGGAAA
AGGGCAACGACCAGGTCAAGCAGGCCAACGAGCACGCCCGTCGCCGCCGCAAGCTCAAGTGGTGGTGTCTCCTGC
TCGTCGTTCTCATCATCATCGGCATCGCCCTCGGTGTCGGTCTCGGCCTGTGTCTCGGCACGGACCGCTGTAGCA
AGTCGAAGTCGTCGTCGTCGTCGTCGCCGTCGCCGTCGTCATCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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