© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00705 |
| Gene name | |
| Location | scaffold_01:2681283..2683317 |
| Strand | + |
| Gene length (bp) | 2034 |
| Transcript length (bp) | 1890 |
| Coding sequence length (bp) | 1890 |
| Protein length (aa) | 630 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07719 | TPR_2 | Tetratricopeptide repeat | 1.4E-05 | 477 | 507 |
| PF13431 | TPR_17 | Tetratricopeptide repeat | 4.9E-05 | 465 | 497 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 2.0E-04 | 317 | 372 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 3.0E-03 | 381 | 427 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 2.1E-03 | 453 | 504 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.3E-01 | 375 | 405 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 2.5E-02 | 409 | 440 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 2.4E-01 | 478 | 508 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 103.34 | 57.18 | 149.51 |
| Alive | In ants, during behavior modification | 77.74 | 43.89 | 111.59 |
| Dead | In ants, recently dead | 95.44 | 52.99 | 137.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.139258 | no |
| Alive | Dead | 0.231132 | no |
| Dead | Fungus | 0.730486 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00705 MASPAPSMPPGPPAGVVLEPPPSAWDRLASWVSENKAVVYTIAGVAVVVTGAGVVYYLGSDPSKSDSSPKLSKKE RRKRKEAERKAAETKTSPASSKSPPAAATATAASAESDSDLPDVDEATVGNLTQQEREGHAAKLKQAGNKAYGDK AYNRAIDLYSRAILCKPDPVFYSNRAACYSAMSDWDKVVEDTTAAINMDPYYVKAINRRATAYEHQKKYSDALLD FTASCIIDNFKSDSTAQAVERLLKIIGEQRAKEMMATRTPKLPSPVFIGNYLQSFRQRPRPSGLEDTVELEPDHG SGQLQLGLRCLEKKTAEGYEEARLAFEKALELGGLGEHEALAYNLRGTMRTLLGNHADAVKDFDRSIELDPGMIQ SYIKRASISLELGETAKADAEFSKAIEQNSSDPDVYYHRAQANFIKGDLSEAQKGYQKSIDLDKDFIFSHIQLGV TQYKMGSIASSMATFRRCMKNFPKTSDVYNYYGELLLDQGNYAEAVEKFDTAIELEKQSKPMAINVLALINKSLA LFHWKQDFEEPQKLCQKALIIDPECDIAVATMAQLLLQQNNVAEAVKYFERTAELARTEGEIINALSYAEATRTQ VKVTEKYPKLADKLAGGGGAPPGLRMGPQ* |
| Coding | >Ophcf2|00705 ATGGCCAGTCCTGCTCCTTCGATGCCGCCAGGGCCCCCTGCCGGTGTCGTACTCGAGCCTCCCCCGTCGGCCTGG GACCGACTGGCTTCGTGGGTGTCGGAGAACAAGGCCGTCGTCTACACCATCGCCGGCGTCGCTGTCGTCGTCACA GGCGCTGGTGTCGTCTACTATCTCGGCTCTGATCCGTCAAAGTCGGATTCGTCTCCCAAGCTCAGCAAGAAGGAG AGGCGGAAGCGGAAAGAGGCCGAGCGCAAGGCCGCCGAGACAAAGACCAGCCCGGCGTCCTCCAAGTCGCCTCCG GCCGCCGCCACCGCCACCGCCGCATCTGCCGAGAGCGACTCGGACCTGCCCGACGTCGACGAGGCGACGGTGGGC AACCTGACGCAACAAGAGCGCGAAGGCCACGCCGCCAAGCTCAAGCAGGCCGGAAACAAGGCATACGGTGACAAG GCCTACAACCGGGCCATCGACCTCTACTCCCGCGCCATCCTCTGCAAGCCCGACCCCGTCTTCTACTCCAACCGT GCCGCCTGCTATAGCGCAATGAGCGACTGGGACAAGGTCGTCGAGGACACGACGGCCGCCATCAACATGGACCCC TACTACGTCAAAGCCATCAATCGCCGGGCAACGGCTTACGAGCACCAGAAGAAGTACTCGGATGCCCTGCTCGAC TTTACCGCCTCGTGCATAATCGACAACTTCAAAAGCGATTCGACCGCCCAGGCTGTTGAGAGGCTTCTCAAGATC ATCGGCGAGCAACGGGCCAAGGAAATGATGGCGACGCGAACTCCGAAGCTCCCCAGCCCCGTCTTCATCGGCAAT TACCTCCAGAGCTTCCGCCAAAGGCCGCGCCCCTCCGGACTCGAAGACACGGTCGAGCTGGAGCCGGATCATGGC AGTGGCCAGCTGCAGCTTGGTCTTCGCTGCCTCGAGAAGAAGACGGCCGAGGGTTACGAGGAGGCGCGGCTGGCG TTCGAAAAGGCCCTCGAGCTTGGCGGCCTCGGAGAGCACGAGGCCCTGGCTTACAATCTCAGGGGCACCATGCGC ACTCTTCTCGGCAACCATGCCGATGCCGTCAAGGACTTTGACCGCAGCATTGAGCTCGACCCGGGCATGATTCAG AGCTACATCAAGCGCGCCAGCATCAGCCTCGAGCTTGGCGAGACGGCAAAGGCCGACGCCGAGTTCTCCAAGGCC ATTGAGCAGAACAGCTCCGATCCGGATGTCTACTACCACCGCGCACAGGCCAACTTTATCAAAGGCGACCTGTCG GAGGCTCAGAAAGGCTACCAAAAGTCCATCGACCTGGACAAGGATTTCATCTTCTCCCACATCCAGCTGGGCGTT ACGCAGTACAAGATGGGCTCCATCGCCTCGTCCATGGCTACCTTTCGCCGCTGCATGAAGAACTTCCCAAAGACC TCGGACGTCTATAACTACTACGGTGAGCTGCTGCTCGATCAGGGCAATTATGCCGAGGCGGTCGAGAAGTTCGAC ACGGCCATAGAGTTGGAGAAGCAATCCAAGCCGATGGCCATCAACGTGCTGGCCCTCATCAACAAGTCGCTGGCC CTCTTCCACTGGAAGCAGGACTTTGAAGAACCGCAGAAGCTGTGCCAAAAGGCCCTCATCATTGACCCGGAATGC GACATCGCCGTCGCCACCATGGCCCAGCTTCTCCTCCAGCAGAATAACGTGGCGGAGGCGGTCAAGTACTTTGAG CGCACGGCCGAGCTGGCCCGCACCGAGGGCGAGATCATCAACGCCCTCTCGTACGCCGAGGCGACGAGGACGCAG GTCAAGGTGACGGAGAAGTATCCCAAGCTGGCGGACAAGCTGGCGGGCGGTGGCGGCGCTCCCCCGGGCCTGCGG ATGGGCCCTCAATGA |
| Transcript | >Ophcf2|00705 ATGGCCAGTCCTGCTCCTTCGATGCCGCCAGGGCCCCCTGCCGGTGTCGTACTCGAGCCTCCCCCGTCGGCCTGG GACCGACTGGCTTCGTGGGTGTCGGAGAACAAGGCCGTCGTCTACACCATCGCCGGCGTCGCTGTCGTCGTCACA GGCGCTGGTGTCGTCTACTATCTCGGCTCTGATCCGTCAAAGTCGGATTCGTCTCCCAAGCTCAGCAAGAAGGAG AGGCGGAAGCGGAAAGAGGCCGAGCGCAAGGCCGCCGAGACAAAGACCAGCCCGGCGTCCTCCAAGTCGCCTCCG GCCGCCGCCACCGCCACCGCCGCATCTGCCGAGAGCGACTCGGACCTGCCCGACGTCGACGAGGCGACGGTGGGC AACCTGACGCAACAAGAGCGCGAAGGCCACGCCGCCAAGCTCAAGCAGGCCGGAAACAAGGCATACGGTGACAAG GCCTACAACCGGGCCATCGACCTCTACTCCCGCGCCATCCTCTGCAAGCCCGACCCCGTCTTCTACTCCAACCGT GCCGCCTGCTATAGCGCAATGAGCGACTGGGACAAGGTCGTCGAGGACACGACGGCCGCCATCAACATGGACCCC TACTACGTCAAAGCCATCAATCGCCGGGCAACGGCTTACGAGCACCAGAAGAAGTACTCGGATGCCCTGCTCGAC TTTACCGCCTCGTGCATAATCGACAACTTCAAAAGCGATTCGACCGCCCAGGCTGTTGAGAGGCTTCTCAAGATC ATCGGCGAGCAACGGGCCAAGGAAATGATGGCGACGCGAACTCCGAAGCTCCCCAGCCCCGTCTTCATCGGCAAT TACCTCCAGAGCTTCCGCCAAAGGCCGCGCCCCTCCGGACTCGAAGACACGGTCGAGCTGGAGCCGGATCATGGC AGTGGCCAGCTGCAGCTTGGTCTTCGCTGCCTCGAGAAGAAGACGGCCGAGGGTTACGAGGAGGCGCGGCTGGCG TTCGAAAAGGCCCTCGAGCTTGGCGGCCTCGGAGAGCACGAGGCCCTGGCTTACAATCTCAGGGGCACCATGCGC ACTCTTCTCGGCAACCATGCCGATGCCGTCAAGGACTTTGACCGCAGCATTGAGCTCGACCCGGGCATGATTCAG AGCTACATCAAGCGCGCCAGCATCAGCCTCGAGCTTGGCGAGACGGCAAAGGCCGACGCCGAGTTCTCCAAGGCC ATTGAGCAGAACAGCTCCGATCCGGATGTCTACTACCACCGCGCACAGGCCAACTTTATCAAAGGCGACCTGTCG GAGGCTCAGAAAGGCTACCAAAAGTCCATCGACCTGGACAAGGATTTCATCTTCTCCCACATCCAGCTGGGCGTT ACGCAGTACAAGATGGGCTCCATCGCCTCGTCCATGGCTACCTTTCGCCGCTGCATGAAGAACTTCCCAAAGACC TCGGACGTCTATAACTACTACGGTGAGCTGCTGCTCGATCAGGGCAATTATGCCGAGGCGGTCGAGAAGTTCGAC ACGGCCATAGAGTTGGAGAAGCAATCCAAGCCGATGGCCATCAACGTGCTGGCCCTCATCAACAAGTCGCTGGCC CTCTTCCACTGGAAGCAGGACTTTGAAGAACCGCAGAAGCTGTGCCAAAAGGCCCTCATCATTGACCCGGAATGC GACATCGCCGTCGCCACCATGGCCCAGCTTCTCCTCCAGCAGAATAACGTGGCGGAGGCGGTCAAGTACTTTGAG CGCACGGCCGAGCTGGCCCGCACCGAGGGCGAGATCATCAACGCCCTCTCGTACGCCGAGGCGACGAGGACGCAG GTCAAGGTGACGGAGAAGTATCCCAAGCTGGCGGACAAGCTGGCGGGCGGTGGCGGCGCTCCCCCGGGCCTGCGG ATGGGCCCTCAATGA |
| Gene | >Ophcf2|00705 ATGGCCAGTCCTGCTCCTTCGATGCCGCCAGGGCCCCCTGCCGGTGTCGTACTCGAGCCTCCCCCGTCGGCCTGG GACCGACTGGCTTCGTGGGTGTCGGAGAACAAGGCCGTCGTCTACACCATCGCCGGCGTCGCTGTCGTCGTCACA GGCGCTGGTGTCGTCTACTATCTCGGCTCTGATCCGGTAAGCTATCTTCTCTCGCTACTGCGTCTTCCTCCTCCT CCCCGACCCGTTATCACTGACCCGTCGCGGTGAAACAGTCAAAGTCGGATTCGTCTCCCAAGCTCAGCAAGAAGG AGAGGCGGAAGCGGAAAGAGGCCGAGCGCAAGGCCGCCGAGACAAAGACCAGCCCGGCGTCCTCCAAGTCGCCTC CGGCCGCCGCCACCGCCACCGCCGCATCTGCCGAGAGCGACTCGGACCTGCCCGACGTCGACGAGGCGACGGTGG GCAACCTGACGCAACAAGAGCGCGAAGGCCACGCCGCCAAGCTCAAGCAGGCCGGAAACAAGGCATACGGTGACA AGGCCTACAACCGGGCCATCGACCTCTACTCCCGCGCCATCCTCTGCAAGCCCGACCCCGTCTTCTACTCCAACC GTGCCGCCTGCTATAGCGCAATGAGCGACTGGGACAAGGTCGTCGAGGACACGACGGCCGCCATCAACATGGACC CCTACTACGTCAAAGCCATCAATCGCCGGGCAACGGCTTACGAGCACCAGAAGAAGTACTCGGATGCCCTGCTCG ACTTTACCGCCTCGTGCATAATCGACAACTTCAAAAGCGATTCGACCGCCCAGGCTGTTGAGAGGCTTCTCAAGA TCATCGGCGAGCAACGGGCCAAGGAAATGATGGCGACGCGAACTCCGAAGCTCCCCAGCCCCGTCTTCATCGGCA ATTACCTCCAGAGCTTCCGCCAAAGGCCGCGCCCCTCCGGACTCGAAGACACGGTCGAGCTGGAGCCGGATCATG GCAGTGGCCAGCTGCAGCTTGGTCTTCGCTGCCTCGAGAAGAAGACGGCCGAGGGTTACGAGGAGGCGCGGCTGG CGTTCGAAAAGGCCCTCGAGCTTGGCGGCCTCGGAGAGCACGAGGCCCTGGCTTACAATCTCAGGGGCACCATGC GCACTCTTCTCGGCAACCATGCCGATGCCGTCAAGGACTTTGACCGCAGCATTGAGCTCGACCCGGGCATGATTC AGAGCTACATCAAGCGCGCCAGCATCAGCCTCGAGCTTGGCGAGACGGCAAAGGCCGACGCCGAGTTCTCCAAGG CCATTGAGCAGAACAGCTCCGATCCGGATGTCTACTACCACCGCGCACAGGCCAACTTTATCAAAGGCGACCTGT CGGAGGCTCAGAAAGGCTACCAAAAGTCCATCGACCTGGACAAGGATTTCATCTTCTCCCACATCCAGCTGGGCG TTACGCAGTACAAGATGGGCTCCATCGCCTCGTCCATGGCTACCTTTCGCCGCTGCATGAAGAACTTCCCAAAGA CCTCGGACGTCTATAACTACTACGGTGAGCTGCTGCTCGATCAGGGCAATTATGCCGAGGCGGTCGAGAAGTTCG ACACGGCCATAGAGTTGGAGAAGCAATCCAAGCCGATGGCCATCAACGTGCTGGCCCTCATCAACAAGTCGCTGG CCCTCTTCCACTGGAAGCAGGACTTTGAAGAACCGCAGAAGCTGTGCCAAAAGGCCCTCATCAGTGAGTCCCATC CCCCCCCCCCCTTCTTCCATGCCGGATGGGATTGCTGACGGATCTCGCTTCGCAGTTGACCCGGAATGCGACATC GCCGTCGCCACCATGGCCCAGCTTCTCCTCCAGCAGAATAACGTGGCGGAGGCGGTCAAGTACTTTGAGCGCACG GCCGAGCTGGCCCGCACCGAGGGCGAGATCATCAACGCCCTCTCGTACGCCGAGGCGACGAGGACGCAGGTCAAG GTGACGGAGAAGTATCCCAAGCTGGCGGACAAGCTGGCGGGCGGTGGCGGCGCTCCCCCGGGCCTGCGGATGGGC CCTCAATGA |