Protein ID | Ophcf2|00705 |
Gene name | |
Location | scaffold_01:2681283..2683317 |
Strand | + |
Gene length (bp) | 2034 |
Transcript length (bp) | 1890 |
Coding sequence length (bp) | 1890 |
Protein length (aa) | 630 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF07719 | TPR_2 | Tetratricopeptide repeat | 1.4E-05 | 477 | 507 |
PF13431 | TPR_17 | Tetratricopeptide repeat | 4.9E-05 | 465 | 497 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 2.0E-04 | 317 | 372 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 3.0E-03 | 381 | 427 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 2.1E-03 | 453 | 504 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 1.3E-01 | 375 | 405 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 2.5E-02 | 409 | 440 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 2.4E-01 | 478 | 508 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 37 | 59 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|00705 MASPAPSMPPGPPAGVVLEPPPSAWDRLASWVSENKAVVYTIAGVAVVVTGAGVVYYLGSDPSKSDSSPKLSKKE RRKRKEAERKAAETKTSPASSKSPPAAATATAASAESDSDLPDVDEATVGNLTQQEREGHAAKLKQAGNKAYGDK AYNRAIDLYSRAILCKPDPVFYSNRAACYSAMSDWDKVVEDTTAAINMDPYYVKAINRRATAYEHQKKYSDALLD FTASCIIDNFKSDSTAQAVERLLKIIGEQRAKEMMATRTPKLPSPVFIGNYLQSFRQRPRPSGLEDTVELEPDHG SGQLQLGLRCLEKKTAEGYEEARLAFEKALELGGLGEHEALAYNLRGTMRTLLGNHADAVKDFDRSIELDPGMIQ SYIKRASISLELGETAKADAEFSKAIEQNSSDPDVYYHRAQANFIKGDLSEAQKGYQKSIDLDKDFIFSHIQLGV TQYKMGSIASSMATFRRCMKNFPKTSDVYNYYGELLLDQGNYAEAVEKFDTAIELEKQSKPMAINVLALINKSLA LFHWKQDFEEPQKLCQKALIIDPECDIAVATMAQLLLQQNNVAEAVKYFERTAELARTEGEIINALSYAEATRTQ VKVTEKYPKLADKLAGGGGAPPGLRMGPQ* |
Coding | >Ophcf2|00705 ATGGCCAGTCCTGCTCCTTCGATGCCGCCAGGGCCCCCTGCCGGTGTCGTACTCGAGCCTCCCCCGTCGGCCTGG GACCGACTGGCTTCGTGGGTGTCGGAGAACAAGGCCGTCGTCTACACCATCGCCGGCGTCGCTGTCGTCGTCACA GGCGCTGGTGTCGTCTACTATCTCGGCTCTGATCCGTCAAAGTCGGATTCGTCTCCCAAGCTCAGCAAGAAGGAG AGGCGGAAGCGGAAAGAGGCCGAGCGCAAGGCCGCCGAGACAAAGACCAGCCCGGCGTCCTCCAAGTCGCCTCCG GCCGCCGCCACCGCCACCGCCGCATCTGCCGAGAGCGACTCGGACCTGCCCGACGTCGACGAGGCGACGGTGGGC AACCTGACGCAACAAGAGCGCGAAGGCCACGCCGCCAAGCTCAAGCAGGCCGGAAACAAGGCATACGGTGACAAG GCCTACAACCGGGCCATCGACCTCTACTCCCGCGCCATCCTCTGCAAGCCCGACCCCGTCTTCTACTCCAACCGT GCCGCCTGCTATAGCGCAATGAGCGACTGGGACAAGGTCGTCGAGGACACGACGGCCGCCATCAACATGGACCCC TACTACGTCAAAGCCATCAATCGCCGGGCAACGGCTTACGAGCACCAGAAGAAGTACTCGGATGCCCTGCTCGAC TTTACCGCCTCGTGCATAATCGACAACTTCAAAAGCGATTCGACCGCCCAGGCTGTTGAGAGGCTTCTCAAGATC ATCGGCGAGCAACGGGCCAAGGAAATGATGGCGACGCGAACTCCGAAGCTCCCCAGCCCCGTCTTCATCGGCAAT TACCTCCAGAGCTTCCGCCAAAGGCCGCGCCCCTCCGGACTCGAAGACACGGTCGAGCTGGAGCCGGATCATGGC AGTGGCCAGCTGCAGCTTGGTCTTCGCTGCCTCGAGAAGAAGACGGCCGAGGGTTACGAGGAGGCGCGGCTGGCG TTCGAAAAGGCCCTCGAGCTTGGCGGCCTCGGAGAGCACGAGGCCCTGGCTTACAATCTCAGGGGCACCATGCGC ACTCTTCTCGGCAACCATGCCGATGCCGTCAAGGACTTTGACCGCAGCATTGAGCTCGACCCGGGCATGATTCAG AGCTACATCAAGCGCGCCAGCATCAGCCTCGAGCTTGGCGAGACGGCAAAGGCCGACGCCGAGTTCTCCAAGGCC ATTGAGCAGAACAGCTCCGATCCGGATGTCTACTACCACCGCGCACAGGCCAACTTTATCAAAGGCGACCTGTCG GAGGCTCAGAAAGGCTACCAAAAGTCCATCGACCTGGACAAGGATTTCATCTTCTCCCACATCCAGCTGGGCGTT ACGCAGTACAAGATGGGCTCCATCGCCTCGTCCATGGCTACCTTTCGCCGCTGCATGAAGAACTTCCCAAAGACC TCGGACGTCTATAACTACTACGGTGAGCTGCTGCTCGATCAGGGCAATTATGCCGAGGCGGTCGAGAAGTTCGAC ACGGCCATAGAGTTGGAGAAGCAATCCAAGCCGATGGCCATCAACGTGCTGGCCCTCATCAACAAGTCGCTGGCC CTCTTCCACTGGAAGCAGGACTTTGAAGAACCGCAGAAGCTGTGCCAAAAGGCCCTCATCATTGACCCGGAATGC GACATCGCCGTCGCCACCATGGCCCAGCTTCTCCTCCAGCAGAATAACGTGGCGGAGGCGGTCAAGTACTTTGAG CGCACGGCCGAGCTGGCCCGCACCGAGGGCGAGATCATCAACGCCCTCTCGTACGCCGAGGCGACGAGGACGCAG GTCAAGGTGACGGAGAAGTATCCCAAGCTGGCGGACAAGCTGGCGGGCGGTGGCGGCGCTCCCCCGGGCCTGCGG ATGGGCCCTCAATGA |
Transcript | >Ophcf2|00705 ATGGCCAGTCCTGCTCCTTCGATGCCGCCAGGGCCCCCTGCCGGTGTCGTACTCGAGCCTCCCCCGTCGGCCTGG GACCGACTGGCTTCGTGGGTGTCGGAGAACAAGGCCGTCGTCTACACCATCGCCGGCGTCGCTGTCGTCGTCACA GGCGCTGGTGTCGTCTACTATCTCGGCTCTGATCCGTCAAAGTCGGATTCGTCTCCCAAGCTCAGCAAGAAGGAG AGGCGGAAGCGGAAAGAGGCCGAGCGCAAGGCCGCCGAGACAAAGACCAGCCCGGCGTCCTCCAAGTCGCCTCCG GCCGCCGCCACCGCCACCGCCGCATCTGCCGAGAGCGACTCGGACCTGCCCGACGTCGACGAGGCGACGGTGGGC AACCTGACGCAACAAGAGCGCGAAGGCCACGCCGCCAAGCTCAAGCAGGCCGGAAACAAGGCATACGGTGACAAG GCCTACAACCGGGCCATCGACCTCTACTCCCGCGCCATCCTCTGCAAGCCCGACCCCGTCTTCTACTCCAACCGT GCCGCCTGCTATAGCGCAATGAGCGACTGGGACAAGGTCGTCGAGGACACGACGGCCGCCATCAACATGGACCCC TACTACGTCAAAGCCATCAATCGCCGGGCAACGGCTTACGAGCACCAGAAGAAGTACTCGGATGCCCTGCTCGAC TTTACCGCCTCGTGCATAATCGACAACTTCAAAAGCGATTCGACCGCCCAGGCTGTTGAGAGGCTTCTCAAGATC ATCGGCGAGCAACGGGCCAAGGAAATGATGGCGACGCGAACTCCGAAGCTCCCCAGCCCCGTCTTCATCGGCAAT TACCTCCAGAGCTTCCGCCAAAGGCCGCGCCCCTCCGGACTCGAAGACACGGTCGAGCTGGAGCCGGATCATGGC AGTGGCCAGCTGCAGCTTGGTCTTCGCTGCCTCGAGAAGAAGACGGCCGAGGGTTACGAGGAGGCGCGGCTGGCG TTCGAAAAGGCCCTCGAGCTTGGCGGCCTCGGAGAGCACGAGGCCCTGGCTTACAATCTCAGGGGCACCATGCGC ACTCTTCTCGGCAACCATGCCGATGCCGTCAAGGACTTTGACCGCAGCATTGAGCTCGACCCGGGCATGATTCAG AGCTACATCAAGCGCGCCAGCATCAGCCTCGAGCTTGGCGAGACGGCAAAGGCCGACGCCGAGTTCTCCAAGGCC ATTGAGCAGAACAGCTCCGATCCGGATGTCTACTACCACCGCGCACAGGCCAACTTTATCAAAGGCGACCTGTCG GAGGCTCAGAAAGGCTACCAAAAGTCCATCGACCTGGACAAGGATTTCATCTTCTCCCACATCCAGCTGGGCGTT ACGCAGTACAAGATGGGCTCCATCGCCTCGTCCATGGCTACCTTTCGCCGCTGCATGAAGAACTTCCCAAAGACC TCGGACGTCTATAACTACTACGGTGAGCTGCTGCTCGATCAGGGCAATTATGCCGAGGCGGTCGAGAAGTTCGAC ACGGCCATAGAGTTGGAGAAGCAATCCAAGCCGATGGCCATCAACGTGCTGGCCCTCATCAACAAGTCGCTGGCC CTCTTCCACTGGAAGCAGGACTTTGAAGAACCGCAGAAGCTGTGCCAAAAGGCCCTCATCATTGACCCGGAATGC GACATCGCCGTCGCCACCATGGCCCAGCTTCTCCTCCAGCAGAATAACGTGGCGGAGGCGGTCAAGTACTTTGAG CGCACGGCCGAGCTGGCCCGCACCGAGGGCGAGATCATCAACGCCCTCTCGTACGCCGAGGCGACGAGGACGCAG GTCAAGGTGACGGAGAAGTATCCCAAGCTGGCGGACAAGCTGGCGGGCGGTGGCGGCGCTCCCCCGGGCCTGCGG ATGGGCCCTCAATGA |
Gene | >Ophcf2|00705 ATGGCCAGTCCTGCTCCTTCGATGCCGCCAGGGCCCCCTGCCGGTGTCGTACTCGAGCCTCCCCCGTCGGCCTGG GACCGACTGGCTTCGTGGGTGTCGGAGAACAAGGCCGTCGTCTACACCATCGCCGGCGTCGCTGTCGTCGTCACA GGCGCTGGTGTCGTCTACTATCTCGGCTCTGATCCGGTAAGCTATCTTCTCTCGCTACTGCGTCTTCCTCCTCCT CCCCGACCCGTTATCACTGACCCGTCGCGGTGAAACAGTCAAAGTCGGATTCGTCTCCCAAGCTCAGCAAGAAGG AGAGGCGGAAGCGGAAAGAGGCCGAGCGCAAGGCCGCCGAGACAAAGACCAGCCCGGCGTCCTCCAAGTCGCCTC CGGCCGCCGCCACCGCCACCGCCGCATCTGCCGAGAGCGACTCGGACCTGCCCGACGTCGACGAGGCGACGGTGG GCAACCTGACGCAACAAGAGCGCGAAGGCCACGCCGCCAAGCTCAAGCAGGCCGGAAACAAGGCATACGGTGACA AGGCCTACAACCGGGCCATCGACCTCTACTCCCGCGCCATCCTCTGCAAGCCCGACCCCGTCTTCTACTCCAACC GTGCCGCCTGCTATAGCGCAATGAGCGACTGGGACAAGGTCGTCGAGGACACGACGGCCGCCATCAACATGGACC CCTACTACGTCAAAGCCATCAATCGCCGGGCAACGGCTTACGAGCACCAGAAGAAGTACTCGGATGCCCTGCTCG ACTTTACCGCCTCGTGCATAATCGACAACTTCAAAAGCGATTCGACCGCCCAGGCTGTTGAGAGGCTTCTCAAGA TCATCGGCGAGCAACGGGCCAAGGAAATGATGGCGACGCGAACTCCGAAGCTCCCCAGCCCCGTCTTCATCGGCA ATTACCTCCAGAGCTTCCGCCAAAGGCCGCGCCCCTCCGGACTCGAAGACACGGTCGAGCTGGAGCCGGATCATG GCAGTGGCCAGCTGCAGCTTGGTCTTCGCTGCCTCGAGAAGAAGACGGCCGAGGGTTACGAGGAGGCGCGGCTGG CGTTCGAAAAGGCCCTCGAGCTTGGCGGCCTCGGAGAGCACGAGGCCCTGGCTTACAATCTCAGGGGCACCATGC GCACTCTTCTCGGCAACCATGCCGATGCCGTCAAGGACTTTGACCGCAGCATTGAGCTCGACCCGGGCATGATTC AGAGCTACATCAAGCGCGCCAGCATCAGCCTCGAGCTTGGCGAGACGGCAAAGGCCGACGCCGAGTTCTCCAAGG CCATTGAGCAGAACAGCTCCGATCCGGATGTCTACTACCACCGCGCACAGGCCAACTTTATCAAAGGCGACCTGT CGGAGGCTCAGAAAGGCTACCAAAAGTCCATCGACCTGGACAAGGATTTCATCTTCTCCCACATCCAGCTGGGCG TTACGCAGTACAAGATGGGCTCCATCGCCTCGTCCATGGCTACCTTTCGCCGCTGCATGAAGAACTTCCCAAAGA CCTCGGACGTCTATAACTACTACGGTGAGCTGCTGCTCGATCAGGGCAATTATGCCGAGGCGGTCGAGAAGTTCG ACACGGCCATAGAGTTGGAGAAGCAATCCAAGCCGATGGCCATCAACGTGCTGGCCCTCATCAACAAGTCGCTGG CCCTCTTCCACTGGAAGCAGGACTTTGAAGAACCGCAGAAGCTGTGCCAAAAGGCCCTCATCAGTGAGTCCCATC CCCCCCCCCCCTTCTTCCATGCCGGATGGGATTGCTGACGGATCTCGCTTCGCAGTTGACCCGGAATGCGACATC GCCGTCGCCACCATGGCCCAGCTTCTCCTCCAGCAGAATAACGTGGCGGAGGCGGTCAAGTACTTTGAGCGCACG GCCGAGCTGGCCCGCACCGAGGGCGAGATCATCAACGCCCTCTCGTACGCCGAGGCGACGAGGACGCAGGTCAAG GTGACGGAGAAGTATCCCAAGCTGGCGGACAAGCTGGCGGGCGGTGGCGGCGCTCCCCCGGGCCTGCGGATGGGC CCTCAATGA |