© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00696 |
| Gene name | |
| Location | scaffold_01:2646142..2648282 |
| Strand | - |
| Gene length (bp) | 2140 |
| Transcript length (bp) | 1671 |
| Coding sequence length (bp) | 1671 |
| Protein length (aa) | 557 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 6.0E-95 | 27 | 490 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 63 | 85 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 160 | 182 | 22 |
| 5 | 189 | 211 | 22 |
| 6 | 241 | 260 | 19 |
| 7 | 280 | 302 | 22 |
| 8 | 399 | 421 | 22 |
| 9 | 445 | 467 | 22 |
| 10 | 482 | 501 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00696 MKPSSLFRRFELDNVSSLTNDDVRPCDAKRRTWNLLAFHNYWLLINCTIATFFAGSSLITLGLTWWQAVVSIVIG NLLVTAAILVSSVQGTHYHIGFPIYSRAVWGIWGAQFTIWNRVFLSFGGYGFQAWVGGQCIYLMILSWDPQYGSR IPNGIPSDTGTTTARFVCYIIFSVVSLPFIRLRPHRLQVFFNVTSVITFVFFFALLVWALATMGPDGFGDTVDSH QPGLAPDGMRVPRNTGWRIVYGVMSTMGSIAAGILNQSDFARLARRPRDAVYGQALAYPVYAIYTSVLGILVVAA TQRRFDGEAIWGLPTLLERLLERDPGPDARAAVFFSGLALVASQLGSSIPGNALAGGIDLASMFPRHINIRRGAY MTALVSPMVNPWRLVSTATVFLSVLNGYGIFLAPMTGIMTAFYFFVCRQKLKIEDLYRADGDGIYWYWRGLNWRA PCAWIVGVAPCLPGFVAQVNGDQTMPEPAMELFYLNYLYGYLVSGVVFVALHKLIPARSVDDFVRKPETARQLQL HYRQLWDEVPSEPSQASGDVSFQGKEPGSSK* |
| Coding | >Ophcf2|00696 ATGAAGCCCTCGTCTTTGTTCCGTCGGTTTGAGCTCGACAACGTTTCGTCCTTGACGAACGATGATGTCCGTCCC TGTGATGCGAAGCGTCGGACCTGGAACCTGCTCGCCTTTCACAACTACTGGCTGCTCATCAACTGCACCATCGCC ACCTTCTTCGCCGGAAGCAGCCTCATCACGCTCGGCCTGACGTGGTGGCAGGCCGTCGTCAGCATCGTCATCGGG AACCTGCTCGTGACGGCGGCCATCCTGGTGAGCTCGGTGCAGGGAACCCATTACCATATCGGATTCCCCATCTAC AGCCGCGCGGTATGGGGCATCTGGGGCGCCCAATTCACGATATGGAACCGTGTCTTTCTGTCGTTTGGTGGGTAC GGCTTCCAAGCCTGGGTCGGCGGCCAATGCATCTACCTCATGATCCTCTCCTGGGACCCCCAGTACGGCTCCCGA ATCCCCAACGGCATCCCCTCGGACACGGGCACGACGACGGCCCGCTTCGTCTGCTACATCATCTTCTCCGTCGTC AGCCTGCCCTTCATCCGGCTACGACCACACCGACTACAGGTCTTCTTCAACGTCACGAGCGTCATCACCTTCGTC TTCTTCTTCGCCCTGCTCGTCTGGGCCCTCGCCACCATGGGCCCGGACGGCTTCGGCGATACCGTCGACTCGCAC CAGCCCGGCCTGGCTCCGGACGGTATGAGGGTTCCGCGGAACACGGGCTGGCGCATCGTCTACGGCGTCATGTCC ACCATGGGATCCATCGCCGCCGGGATCCTGAACCAGAGTGACTTTGCCCGTCTGGCCCGTCGTCCCCGAGACGCC GTCTACGGTCAGGCTCTGGCGTATCCCGTCTATGCCATCTATACCTCGGTCCTCGGTATCCTCGTCGTGGCTGCC ACCCAGCGTCGCTTCGACGGAGAGGCCATCTGGGGTCTGCCCACGCTGCTCGAGCGCCTACTAGAGAGAGACCCG GGGCCGGATGCCCGTGCCGCCGTCTTCTTCTCCGGCTTGGCCCTCGTCGCCTCGCAGCTGGGCAGCAGCATCCCC GGAAACGCGCTGGCGGGCGGCATAGACCTGGCCTCCATGTTCCCGCGTCACATCAACATCCGTCGAGGAGCCTAC ATGACCGCTCTCGTGAGTCCCATGGTGAACCCCTGGCGCCTGGTCAGCACCGCCACCGTCTTTCTCAGCGTCCTC AACGGCTATGGCATCTTCCTGGCGCCCATGACGGGCATCATGACGGCCTTTTACTTTTTCGTCTGCCGCCAGAAG CTCAAGATCGAGGACCTGTACCGAGCCGATGGCGACGGCATCTACTGGTACTGGCGAGGTCTGAACTGGCGGGCT CCCTGTGCGTGGATCGTCGGCGTCGCCCCCTGCCTCCCCGGCTTCGTCGCCCAGGTCAACGGAGACCAGACGATG CCCGAGCCCGCCATGGAGCTCTTTTACCTCAACTACCTCTACGGCTACCTCGTCAGCGGCGTCGTCTTCGTTGCT CTGCACAAGCTGATTCCCGCCCGGTCCGTGGATGACTTCGTCCGGAAGCCCGAGACGGCGCGTCAGCTTCAGCTA CACTATCGTCAGCTGTGGGACGAGGTGCCGTCCGAGCCCAGCCAAGCCAGCGGTGATGTGTCTTTTCAGGGAAAG GAGCCGGGATCGAGCAAGTGA |
| Transcript | >Ophcf2|00696 ATGAAGCCCTCGTCTTTGTTCCGTCGGTTTGAGCTCGACAACGTTTCGTCCTTGACGAACGATGATGTCCGTCCC TGTGATGCGAAGCGTCGGACCTGGAACCTGCTCGCCTTTCACAACTACTGGCTGCTCATCAACTGCACCATCGCC ACCTTCTTCGCCGGAAGCAGCCTCATCACGCTCGGCCTGACGTGGTGGCAGGCCGTCGTCAGCATCGTCATCGGG AACCTGCTCGTGACGGCGGCCATCCTGGTGAGCTCGGTGCAGGGAACCCATTACCATATCGGATTCCCCATCTAC AGCCGCGCGGTATGGGGCATCTGGGGCGCCCAATTCACGATATGGAACCGTGTCTTTCTGTCGTTTGGTGGGTAC GGCTTCCAAGCCTGGGTCGGCGGCCAATGCATCTACCTCATGATCCTCTCCTGGGACCCCCAGTACGGCTCCCGA ATCCCCAACGGCATCCCCTCGGACACGGGCACGACGACGGCCCGCTTCGTCTGCTACATCATCTTCTCCGTCGTC AGCCTGCCCTTCATCCGGCTACGACCACACCGACTACAGGTCTTCTTCAACGTCACGAGCGTCATCACCTTCGTC TTCTTCTTCGCCCTGCTCGTCTGGGCCCTCGCCACCATGGGCCCGGACGGCTTCGGCGATACCGTCGACTCGCAC CAGCCCGGCCTGGCTCCGGACGGTATGAGGGTTCCGCGGAACACGGGCTGGCGCATCGTCTACGGCGTCATGTCC ACCATGGGATCCATCGCCGCCGGGATCCTGAACCAGAGTGACTTTGCCCGTCTGGCCCGTCGTCCCCGAGACGCC GTCTACGGTCAGGCTCTGGCGTATCCCGTCTATGCCATCTATACCTCGGTCCTCGGTATCCTCGTCGTGGCTGCC ACCCAGCGTCGCTTCGACGGAGAGGCCATCTGGGGTCTGCCCACGCTGCTCGAGCGCCTACTAGAGAGAGACCCG GGGCCGGATGCCCGTGCCGCCGTCTTCTTCTCCGGCTTGGCCCTCGTCGCCTCGCAGCTGGGCAGCAGCATCCCC GGAAACGCGCTGGCGGGCGGCATAGACCTGGCCTCCATGTTCCCGCGTCACATCAACATCCGTCGAGGAGCCTAC ATGACCGCTCTCGTGAGTCCCATGGTGAACCCCTGGCGCCTGGTCAGCACCGCCACCGTCTTTCTCAGCGTCCTC AACGGCTATGGCATCTTCCTGGCGCCCATGACGGGCATCATGACGGCCTTTTACTTTTTCGTCTGCCGCCAGAAG CTCAAGATCGAGGACCTGTACCGAGCCGATGGCGACGGCATCTACTGGTACTGGCGAGGTCTGAACTGGCGGGCT CCCTGTGCGTGGATCGTCGGCGTCGCCCCCTGCCTCCCCGGCTTCGTCGCCCAGGTCAACGGAGACCAGACGATG CCCGAGCCCGCCATGGAGCTCTTTTACCTCAACTACCTCTACGGCTACCTCGTCAGCGGCGTCGTCTTCGTTGCT CTGCACAAGCTGATTCCCGCCCGGTCCGTGGATGACTTCGTCCGGAAGCCCGAGACGGCGCGTCAGCTTCAGCTA CACTATCGTCAGCTGTGGGACGAGGTGCCGTCCGAGCCCAGCCAAGCCAGCGGTGATGTGTCTTTTCAGGGAAAG GAGCCGGGATCGAGCAAGTGA |
| Gene | >Ophcf2|00696 ATGAAGCCCTCGTCTTTGTTCCGTCGGTTTGAGCTCGACAACGTTTCGTCCTTGACGGTGGGGATTCCCGATTCA GAGAGTTGCTTGCTATTGATGCTTGATGGAACGCTGATGGGGGGTCAGAACGATGATGTCCGTCCCTGTGATGCG AAGCGTCGGACCTGGAACCTGCTCGCCTTTCACAACTACTGTACGCCATGACGAACAAGCACATACCTATCCTCC CTCACATGTACAACATCAGCTCACCATCTCGACCACAGGGCTGCTCATCAACTGCACCATCGCCACCTTCTTCGC CGGAAGCAGCCTCATCACGCTCGGCCTGACGTGGTGGCAGGCCGTCGTCAGTAAGCCGGCCAGCCCGCTGATGCC CGCTCGCTGACGTGGTCCAGGCATCGTCATCGGGAACCTGCTCGTGACGGCGGCCATCCTGGTGAGCTCGGTGCA GGGAACCCATTACCATAGTATGTCGTCTCGTCTCTCCTCTTGCCTGTCCTCTCCGGCTGACGGACGCCAAGTCGG ATTCCCCATCTACAGCCGCGCGGTATGGGGCATCTGGGGCGCCCAATTCACGATATGGAACCGTGTCTTTCTGTC GTTTGGTGGGTGCTGGCGAACTCCCCTGACCGTCGAGGCGTCATATCCTGGTTGATAAACCATGTATCGATAACT AACGACGAAACTTGCAGTATGGTGAGTCCGTCCACCGTCTCACAGCATTTCCATCCCTCCATAGCCCTCCCTATC CCAGCTCTAACATGAACAACCATGACAAGGTACGGCTTCCAAGCCTGGGTCGGCGGCCAATGCATCTACCTCATG ATCCTCTCCTGGGACCCCCAGTACGGCTCCCGAATCCCCAACGGCATCCCCTCGGACACGGGCACGACGACGGCC CGCTTCGTCTGCTACATCATCTTCTCCGTCGTCAGCCTGCCCTTCATCCGGCTACGACCACACCGACTACAGGTC TTCTTCAACGTCACGAGCGTCATCACCTTCGTCTTCTTCTTCGCCCTGCTCGTCTGGGCCCTCGCCACCATGGGC CCGGACGGCTTCGGCGATACCGTCGACTCGCACCAGCCCGGCCTGGCTCCGGACGGTATGAGGGTTCCGCGGAAC ACGGGCTGGCGCATCGTCTACGGCGTCATGTCCACCATGGGATCCATCGCCGCCGGGATCCTGAACCAGAGTGAC TTTGCCCGTCTGGCCCGTCGTCCCCGAGACGCCGTCTACGGTCAGGCTCTGGCGTATCCCGTCTATGCCATCTAT ACCTCGGTCCTCGGTATCCTCGTCGTGGCTGCCACCCAGCGTCGCTTCGACGGAGAGGCCATCTGGGGTCTGCCC ACGCTGCTCGAGCGCCTACTAGAGAGAGACCCGGGGCCGGATGCCCGTGCCGCCGTCTTCTTCTCCGGCTTGGCC CTCGTCGCCTCGCAGCTGGGCAGCAGCATCCCCGGAAACGCGCTGGCGGGCGGCATAGACCTGGCCTCCATGTTC CCGCGTCACATCAACATCCGTCGAGGAGCCTACATGACCGCTCTCGTGAGTCCCATGGTGAACCCCTGGCGCCTG GTCAGCACCGCCACCGTCTTTCTCAGCGTCCTCAACGGCTATGGCATCTTCCTGGCGCCCATGACGGGCATCATG ACGGCCTTTTACTTTTTCGTCTGCCGCCAGAAGCTCAAGATCGAGGACCTGTACCGAGCCGATGGCGACGGCATC TACTGGTACTGGCGAGGTCTGAACTGGCGGGCTCCCTGTGCGGTGCGTCACTGAAACAAACACTCCCGTCACTTC CCAAGTGCAGACTGACGGCTGGCTACAGTGGATCGTCGGCGTCGCCCCCTGCCTCCCCGGCTTCGTCGCCCAGGT CAACGGAGACCAGACGATGCCCGAGCCCGCCATGGAGCTCTTTTACCTCAACTACCTCTACGGCTACCTCGTCAG CGGCGTCGTCTTCGTTGCTCTGCACAAGCTGATTCCCGCCCGGTCCGTGGATGACTTCGTCCGGAAGCCCGAGAC GGCGCGTCAGCTTCAGCTACACTATCGTCAGCTGTGGGACGAGGTGCCGTCCGAGCCCAGCCAAGCCAGCGGTGA TGTGTCTTTTCAGGGAAAGGAGCCGGGATCGAGCAAGTGA |