© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00692 |
| Gene name | |
| Location | scaffold_01:2635787..2637775 |
| Strand | + |
| Gene length (bp) | 1988 |
| Transcript length (bp) | 1926 |
| Coding sequence length (bp) | 1926 |
| Protein length (aa) | 642 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01061 | ABC2_membrane | ABC-2 type transporter | 2.9E-23 | 366 | 574 |
| PF00005 | ABC_tran | ABC transporter | 5.6E-22 | 56 | 225 |
| PF19055 | ABC2_membrane_7 | ABC-2 type transporter | 1.1E-06 | 255 | 318 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0140359 | ABC-type transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0005575 | cellular_component | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0015399 | primary active transmembrane transporter activity | No |
| GO:0043167 | ion binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.1668 | 0.1525 | 0.048 | 0.4912 | 0.1353 | 0.035 | 0.4292 | 0.3946 | 0.1956 | 0.0091 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 382 | 401 | 19 |
| 2 | 416 | 438 | 22 |
| 3 | 459 | 481 | 22 |
| 4 | 496 | 518 | 22 |
| 5 | 525 | 543 | 18 |
| 6 | 619 | 638 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 120 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00692 MTSLTPSAVDVERQTSDEKNLTNSTVQSIAWRGVTITVPGRKGAPAKKIIDGAQGVVEAGELCAIMGPSGAGKTS LLNHLARRESQAAKMEGEVLVNGRVVADEEFRRLTSFVEQQDALISSLTCFETVDFNVRLTGTKCVFFSCLVSLQ YPLTGERGKRGRRTKTERIAFVNKLLRSLGLDGMENSFVGPFYRGNISGGEKRRLSVASQVGGEPKILFLDEPTS GIDSTGSQQMVRYLRELAKSTGIIIVCSIHQPSAAIFHKFDKLVLVSEGRMCYFGSTTDVVPYLEKRGHQMPPLS NPAEFILDLVNTSFSTDQSALDNLCRSWESSDLADELRRVIEDTHSHDDSADDPSLSRPSLAGRVVTLLRRSLIK SYRDPTVYLLRAVLYLLVAIIIGTIWPRHDGSQQSIDNLMTATFISTGFASLISVSCVPPVIEDIKHHLQEKRNG YSGCLEFSLSNFLLGLPYLLLISLLFSVVTLPLNGLKMSAGPFFCWLLWHFLGLVTMESAILLIAALVIKLNTAV ALLLLVSTIQFAAGGYVVKAKIMTMFYKYVLYYWDFLTYTYRGMLSGQFRDATYDCGPGCQCTYPPMPEDPCRIS GNRVLEQLEYSPKNLGRDIGIVLAMVVGYRLAAWVVISRRG* |
| Coding | >Ophcf2|00692 ATGACCTCTCTCACCCCATCCGCCGTCGACGTCGAGCGGCAGACATCAGATGAAAAGAACTTGACCAACTCGACG GTGCAGAGCATCGCCTGGCGCGGCGTCACCATAACCGTGCCTGGCCGCAAGGGGGCTCCGGCGAAGAAGATTATC GATGGCGCCCAGGGCGTTGTCGAGGCGGGCGAGCTGTGTGCCATCATGGGTCCTTCAGGTGCCGGAAAGACCTCT CTCCTTAACCACCTCGCCAGACGCGAGAGCCAGGCCGCCAAGATGGAGGGCGAGGTGCTCGTCAACGGCAGGGTC GTTGCGGATGAAGAGTTCCGTCGGCTCACTTCGTTCGTGGAGCAGCAGGATGCTCTCATCTCGTCGCTCACTTGC TTCGAGACGGTTGATTTCAACGTCAGGCTGACTGGCACCAAGTGCGTCTTTTTCTCGTGTCTTGTTTCGCTCCAA TATCCGCTGACGGGTGAACGGGGAAAACGCGGCAGACGGACCAAGACGGAACGTATCGCCTTTGTCAACAAGCTC CTCCGATCCCTGGGCCTCGACGGGATGGAAAACTCCTTCGTCGGCCCCTTTTACCGCGGCAACATCTCCGGCGGT GAGAAGCGGCGGCTCTCCGTCGCCAGCCAGGTAGGAGGCGAGCCCAAGATCCTCTTCCTCGACGAGCCCACCAGC GGCATCGACTCGACCGGCAGCCAGCAGATGGTTCGGTATCTGAGGGAGCTGGCCAAGAGCACGGGCATCATCATC GTCTGCTCCATTCATCAGCCGTCGGCCGCCATCTTCCACAAGTTCGACAAGTTGGTGCTGGTTTCCGAGGGGAGG ATGTGCTATTTCGGTTCGACGACGGATGTTGTGCCTTACTTGGAGAAAAGGGGTCATCAGATGCCCCCCCTGTCC AACCCTGCCGAGTTCATCCTCGATCTCGTCAACACCAGCTTCTCGACGGATCAATCAGCACTCGACAACCTTTGC CGATCTTGGGAGAGCTCGGATCTTGCAGACGAGCTTCGCAGGGTCATCGAGGACACGCACAGTCACGACGATTCA GCCGACGATCCGTCCTTGTCTCGCCCGAGCTTGGCTGGTCGGGTCGTAACCTTGCTTCGCCGCAGCTTGATCAAG AGCTATCGAGACCCGACCGTCTACCTCCTTCGGGCCGTGCTGTACCTGTTGGTCGCCATCATCATCGGCACGATT TGGCCGCGTCACGATGGGAGTCAACAGTCCATCGACAATCTGATGACGGCCACTTTTATTTCCACGGGCTTTGCG TCTCTCATCTCGGTATCCTGCGTTCCGCCGGTCATCGAAGACATCAAACACCATCTGCAGGAGAAACGCAATGGC TACAGCGGCTGTCTGGAATTCTCCCTCTCCAACTTCCTCCTTGGCCTGCCTTATCTGCTACTCATCTCCCTCCTC TTCTCCGTCGTCACTCTCCCGCTGAACGGGCTCAAAATGTCGGCTGGGCCGTTCTTTTGTTGGCTTCTTTGGCAT TTTCTGGGTCTGGTGACCATGGAGTCCGCCATCCTCTTGATCGCGGCGCTCGTCATCAAGCTCAACACGGCGGTG GCCTTGCTGCTGCTCGTCAGCACCATCCAGTTCGCCGCCGGTGGCTACGTGGTCAAGGCCAAGATCATGACCATG TTTTACAAGTACGTCTTGTACTACTGGGACTTCTTGACCTATACATACAGGGGTATGCTGTCTGGCCAGTTCCGC GACGCCACGTACGACTGCGGACCGGGCTGCCAGTGCACCTATCCGCCCATGCCCGAGGACCCTTGCCGCATTTCC GGCAATCGAGTCCTCGAGCAACTCGAATATTCGCCAAAGAATCTCGGCAGGGATATTGGGATAGTATTGGCCATG GTGGTCGGCTACCGGCTGGCAGCGTGGGTTGTCATCAGTCGTCGAGGCTGA |
| Transcript | >Ophcf2|00692 ATGACCTCTCTCACCCCATCCGCCGTCGACGTCGAGCGGCAGACATCAGATGAAAAGAACTTGACCAACTCGACG GTGCAGAGCATCGCCTGGCGCGGCGTCACCATAACCGTGCCTGGCCGCAAGGGGGCTCCGGCGAAGAAGATTATC GATGGCGCCCAGGGCGTTGTCGAGGCGGGCGAGCTGTGTGCCATCATGGGTCCTTCAGGTGCCGGAAAGACCTCT CTCCTTAACCACCTCGCCAGACGCGAGAGCCAGGCCGCCAAGATGGAGGGCGAGGTGCTCGTCAACGGCAGGGTC GTTGCGGATGAAGAGTTCCGTCGGCTCACTTCGTTCGTGGAGCAGCAGGATGCTCTCATCTCGTCGCTCACTTGC TTCGAGACGGTTGATTTCAACGTCAGGCTGACTGGCACCAAGTGCGTCTTTTTCTCGTGTCTTGTTTCGCTCCAA TATCCGCTGACGGGTGAACGGGGAAAACGCGGCAGACGGACCAAGACGGAACGTATCGCCTTTGTCAACAAGCTC CTCCGATCCCTGGGCCTCGACGGGATGGAAAACTCCTTCGTCGGCCCCTTTTACCGCGGCAACATCTCCGGCGGT GAGAAGCGGCGGCTCTCCGTCGCCAGCCAGGTAGGAGGCGAGCCCAAGATCCTCTTCCTCGACGAGCCCACCAGC GGCATCGACTCGACCGGCAGCCAGCAGATGGTTCGGTATCTGAGGGAGCTGGCCAAGAGCACGGGCATCATCATC GTCTGCTCCATTCATCAGCCGTCGGCCGCCATCTTCCACAAGTTCGACAAGTTGGTGCTGGTTTCCGAGGGGAGG ATGTGCTATTTCGGTTCGACGACGGATGTTGTGCCTTACTTGGAGAAAAGGGGTCATCAGATGCCCCCCCTGTCC AACCCTGCCGAGTTCATCCTCGATCTCGTCAACACCAGCTTCTCGACGGATCAATCAGCACTCGACAACCTTTGC CGATCTTGGGAGAGCTCGGATCTTGCAGACGAGCTTCGCAGGGTCATCGAGGACACGCACAGTCACGACGATTCA GCCGACGATCCGTCCTTGTCTCGCCCGAGCTTGGCTGGTCGGGTCGTAACCTTGCTTCGCCGCAGCTTGATCAAG AGCTATCGAGACCCGACCGTCTACCTCCTTCGGGCCGTGCTGTACCTGTTGGTCGCCATCATCATCGGCACGATT TGGCCGCGTCACGATGGGAGTCAACAGTCCATCGACAATCTGATGACGGCCACTTTTATTTCCACGGGCTTTGCG TCTCTCATCTCGGTATCCTGCGTTCCGCCGGTCATCGAAGACATCAAACACCATCTGCAGGAGAAACGCAATGGC TACAGCGGCTGTCTGGAATTCTCCCTCTCCAACTTCCTCCTTGGCCTGCCTTATCTGCTACTCATCTCCCTCCTC TTCTCCGTCGTCACTCTCCCGCTGAACGGGCTCAAAATGTCGGCTGGGCCGTTCTTTTGTTGGCTTCTTTGGCAT TTTCTGGGTCTGGTGACCATGGAGTCCGCCATCCTCTTGATCGCGGCGCTCGTCATCAAGCTCAACACGGCGGTG GCCTTGCTGCTGCTCGTCAGCACCATCCAGTTCGCCGCCGGTGGCTACGTGGTCAAGGCCAAGATCATGACCATG TTTTACAAGTACGTCTTGTACTACTGGGACTTCTTGACCTATACATACAGGGGTATGCTGTCTGGCCAGTTCCGC GACGCCACGTACGACTGCGGACCGGGCTGCCAGTGCACCTATCCGCCCATGCCCGAGGACCCTTGCCGCATTTCC GGCAATCGAGTCCTCGAGCAACTCGAATATTCGCCAAAGAATCTCGGCAGGGATATTGGGATAGTATTGGCCATG GTGGTCGGCTACCGGCTGGCAGCGTGGGTTGTCATCAGTCGTCGAGGCTGA |
| Gene | >Ophcf2|00692 ATGACCTCTCTCACCCCATCCGCCGTCGACGTCGAGCGGCAGACATCAGATGAAAAGAACTTGACCAACTCGACG GTGCAGAGCATCGCCTGGCGCGGCGTCACCATAACCGTGCCTGGCCGCAAGGGGGCTCCGGCGAAGAAGATTATC GATGGCGCCCAGGGCGTTGTCGAGGCGGGTAACGAGATCCCAGCCATTGCTTTCCCCATCGGGATGGATAGGCTG AGAGTCCCCTTTTAGGCGAGCTGTGTGCCATCATGGGTCCTTCAGGTGCCGGAAAGACCTCTCTCCTTAACCACC TCGCCAGACGCGAGAGCCAGGCCGCCAAGATGGAGGGCGAGGTGCTCGTCAACGGCAGGGTCGTTGCGGATGAAG AGTTCCGTCGGCTCACTTCGTTCGTGGAGCAGCAGGATGCTCTCATCTCGTCGCTCACTTGCTTCGAGACGGTTG ATTTCAACGTCAGGCTGACTGGCACCAAGTGCGTCTTTTTCTCGTGTCTTGTTTCGCTCCAATATCCGCTGACGG GTGAACGGGGAAAACGCGGCAGACGGACCAAGACGGAACGTATCGCCTTTGTCAACAAGCTCCTCCGATCCCTGG GCCTCGACGGGATGGAAAACTCCTTCGTCGGCCCCTTTTACCGCGGCAACATCTCCGGCGGTGAGAAGCGGCGGC TCTCCGTCGCCAGCCAGGTAGGAGGCGAGCCCAAGATCCTCTTCCTCGACGAGCCCACCAGCGGCATCGACTCGA CCGGCAGCCAGCAGATGGTTCGGTATCTGAGGGAGCTGGCCAAGAGCACGGGCATCATCATCGTCTGCTCCATTC ATCAGCCGTCGGCCGCCATCTTCCACAAGTTCGACAAGTTGGTGCTGGTTTCCGAGGGGAGGATGTGCTATTTCG GTTCGACGACGGATGTTGTGCCTTACTTGGAGAAAAGGGGTCATCAGATGCCCCCCCTGTCCAACCCTGCCGAGT TCATCCTCGATCTCGTCAACACCAGCTTCTCGACGGATCAATCAGCACTCGACAACCTTTGCCGATCTTGGGAGA GCTCGGATCTTGCAGACGAGCTTCGCAGGGTCATCGAGGACACGCACAGTCACGACGATTCAGCCGACGATCCGT CCTTGTCTCGCCCGAGCTTGGCTGGTCGGGTCGTAACCTTGCTTCGCCGCAGCTTGATCAAGAGCTATCGAGACC CGACCGTCTACCTCCTTCGGGCCGTGCTGTACCTGTTGGTCGCCATCATCATCGGCACGATTTGGCCGCGTCACG ATGGGAGTCAACAGTCCATCGACAATCTGATGACGGCCACTTTTATTTCCACGGGCTTTGCGTCTCTCATCTCGG TATCCTGCGTTCCGCCGGTCATCGAAGACATCAAACACCATCTGCAGGAGAAACGCAATGGCTACAGCGGCTGTC TGGAATTCTCCCTCTCCAACTTCCTCCTTGGCCTGCCTTATCTGCTACTCATCTCCCTCCTCTTCTCCGTCGTCA CTCTCCCGCTGAACGGGCTCAAAATGTCGGCTGGGCCGTTCTTTTGTTGGCTTCTTTGGCATTTTCTGGGTCTGG TGACCATGGAGTCCGCCATCCTCTTGATCGCGGCGCTCGTCATCAAGCTCAACACGGCGGTGGCCTTGCTGCTGC TCGTCAGCACCATCCAGTTCGCCGCCGGTGGCTACGTGGTCAAGGCCAAGATCATGACCATGTTTTACAAGTACG TCTTGTACTACTGGGACTTCTTGACCTATACATACAGGGGTATGCTGTCTGGCCAGTTCCGCGACGCCACGTACG ACTGCGGACCGGGCTGCCAGTGCACCTATCCGCCCATGCCCGAGGACCCTTGCCGCATTTCCGGCAATCGAGTCC TCGAGCAACTCGAATATTCGCCAAAGAATCTCGGCAGGGATATTGGGATAGTATTGGCCATGGTGGTCGGCTACC GGCTGGCAGCGTGGGTTGTCATCAGTCGTCGAGGCTGA |