Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00668
Gene name
Locationscaffold_01:2573398..2574182
Strand+
Gene length (bp)784
Transcript length (bp)732
Coding sequence length (bp)732
Protein length (aa) 244

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 4.6E-14 156 216

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

Domain # Start End Length
1 222 241 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00668
MNVLYNSALRQSRAIRAELVELNAKGAPTPAEMGNVSASLASFGKTINDYQQLSRQELVQKKQEEAVERIKKFRL
DLSDFRSQIDALNKVREDAQHQANRSELLGRRPYNATPENPYANAAVGPTPSAFQPRQPAHAGGSLTTGSADEIR
EAHAFREQNFFANTNQALDDYIARGQAVLGDLGQQREMLKNTQKRLYNVANTLGVSGDTIRMVERRAREDKWIFF
AGVIAFFFFCWLVLHYLR*
Coding >Ophcf2|00668
ATGAACGTGCTATACAACTCGGCCCTGCGGCAGAGCAGGGCCATCCGCGCCGAGCTGGTCGAGCTCAACGCCAAG
GGCGCGCCGACGCCGGCCGAGATGGGCAACGTATCTGCGTCGCTGGCCTCGTTTGGCAAGACGATCAACGACTAC
CAGCAGCTCTCGCGCCAGGAGCTCGTGCAGAAGAAGCAGGAAGAGGCCGTCGAGCGCATCAAGAAGTTCCGCCTC
GACCTGTCCGACTTTCGCTCCCAGATCGATGCCCTCAACAAGGTTCGCGAAGACGCTCAGCACCAGGCCAACAGA
AGCGAGCTTCTCGGCAGGAGACCCTACAATGCGACGCCCGAGAACCCGTATGCAAACGCCGCTGTTGGTCCGACG
CCGTCGGCCTTCCAGCCCCGGCAACCCGCGCACGCCGGCGGCTCGCTGACGACGGGGTCGGCGGACGAGATCCGC
GAGGCTCACGCGTTTCGCGAACAAAACTTCTTCGCCAACACGAACCAGGCGCTCGACGACTACATCGCCAGAGGG
CAGGCCGTTCTGGGCGACCTGGGTCAGCAGCGCGAGATGCTCAAAAACACGCAGAAAAGGTTGTACAACGTGGCC
AATACGCTGGGCGTCAGCGGAGACACTATTCGCATGGTCGAGCGGCGAGCGCGAGAGGACAAGTGGATCTTCTTC
GCCGGCGTCATCGCCTTCTTCTTCTTTTGCTGGCTCGTGCTACACTATCTGCGATGA
Transcript >Ophcf2|00668
ATGAACGTGCTATACAACTCGGCCCTGCGGCAGAGCAGGGCCATCCGCGCCGAGCTGGTCGAGCTCAACGCCAAG
GGCGCGCCGACGCCGGCCGAGATGGGCAACGTATCTGCGTCGCTGGCCTCGTTTGGCAAGACGATCAACGACTAC
CAGCAGCTCTCGCGCCAGGAGCTCGTGCAGAAGAAGCAGGAAGAGGCCGTCGAGCGCATCAAGAAGTTCCGCCTC
GACCTGTCCGACTTTCGCTCCCAGATCGATGCCCTCAACAAGGTTCGCGAAGACGCTCAGCACCAGGCCAACAGA
AGCGAGCTTCTCGGCAGGAGACCCTACAATGCGACGCCCGAGAACCCGTATGCAAACGCCGCTGTTGGTCCGACG
CCGTCGGCCTTCCAGCCCCGGCAACCCGCGCACGCCGGCGGCTCGCTGACGACGGGGTCGGCGGACGAGATCCGC
GAGGCTCACGCGTTTCGCGAACAAAACTTCTTCGCCAACACGAACCAGGCGCTCGACGACTACATCGCCAGAGGG
CAGGCCGTTCTGGGCGACCTGGGTCAGCAGCGCGAGATGCTCAAAAACACGCAGAAAAGGTTGTACAACGTGGCC
AATACGCTGGGCGTCAGCGGAGACACTATTCGCATGGTCGAGCGGCGAGCGCGAGAGGACAAGTGGATCTTCTTC
GCCGGCGTCATCGCCTTCTTCTTCTTTTGCTGGCTCGTGCTACACTATCTGCGATGA
Gene >Ophcf2|00668
ATGGTGAGAAGAAGAGCTCGTTAACTGGACGGTCCGCAGCTAATAGCCATGCCAGAACGTGCTATACAACTCGGC
CCTGCGGCAGAGCAGGGCCATCCGCGCCGAGCTGGTCGAGCTCAACGCCAAGGGCGCGCCGACGCCGGCCGAGAT
GGGCAACGTATCTGCGTCGCTGGCCTCGTTTGGCAAGACGATCAACGACTACCAGCAGCTCTCGCGCCAGGAGCT
CGTGCAGAAGAAGCAGGAAGAGGCCGTCGAGCGCATCAAGAAGTTCCGCCTCGACCTGTCCGACTTTCGCTCCCA
GATCGATGCCCTCAACAAGGTTCGCGAAGACGCTCAGCACCAGGCCAACAGAAGCGAGCTTCTCGGCAGGAGACC
CTACAATGCGACGCCCGAGAACCCGTATGCAAACGCCGCTGTTGGTCCGACGCCGTCGGCCTTCCAGCCCCGGCA
ACCCGCGCACGCCGGCGGCTCGCTGACGACGGGGTCGGCGGACGAGATCCGCGAGGCTCACGCGTTTCGCGAACA
AAACTTCTTCGCCAACACGAACCAGGCGCTCGACGACTACATCGCCAGAGGGCAGGCCGTTCTGGGCGACCTGGG
TCAGCAGCGCGAGATGCTCAAAAACACGCAGAAAAGGTTGTACAACGTGGCCAATACGCTGGGCGTCAGCGGAGA
CACTATTCGCATGGTCGAGCGGCGAGCGCGAGAGGACAAGTGGATCTTCTTCGCCGGCGTCATCGCCTTCTTCTT
CTTTTGCTGGCTCGTGCTACACTATCTGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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