© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00650 |
| Gene name | |
| Location | scaffold_01:2515458..2518147 |
| Strand | - |
| Gene length (bp) | 2689 |
| Transcript length (bp) | 2604 |
| Coding sequence length (bp) | 2604 |
| Protein length (aa) | 868 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 1.4E-167 | 153 | 824 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 159 | 176 | 17 |
| 2 | 229 | 251 | 22 |
| 3 | 266 | 288 | 22 |
| 4 | 335 | 357 | 22 |
| 5 | 412 | 434 | 22 |
| 6 | 479 | 501 | 22 |
| 7 | 547 | 569 | 22 |
| 8 | 574 | 593 | 19 |
| 9 | 656 | 675 | 19 |
| 10 | 696 | 713 | 17 |
| 11 | 723 | 745 | 22 |
| 12 | 766 | 788 | 22 |
| 13 | 803 | 825 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 23.12 | 12.77 | 33.46 |
| Alive | In ants, during behavior modification | 24.85 | 13.76 | 35.94 |
| Dead | In ants, recently dead | 24.82 | 13.78 | 35.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.763722 | no |
| Alive | Dead | 0.995812 | no |
| Dead | Fungus | 0.767797 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00650 MASSPSSSSSPDDDDKNRAVANEKSRDSPFAYDEDDDDDVCAGRLRATTEHDLDVTEDDLLEAKELASQYTLQQV RQVMIRVRRVHEKDPNFPAAVMGKIQAFLDNEAVFARPEKHQHLIQEMKLEAALVSCNSPYAEVRAVVSNRDDVS TPCSTIRSWSIGLVFAVLLAFVNQLFEIRQPAIRVMANVAQLLAYPLGKAAENWLPDRAVTVWGVRHSLNPGPFS KKEHMLITIMANVAYNTPYTNYIIWVQFLPQYFDQPYASHFAYQLLIALATNFIGYGIAGVCRRFLVYPSYCVWP ASLVTIALNSAFHTDVNPPVEGPLRRVWRLSRIRFFYLMFACMFLWFWLPGYVWVGLSKFNWLGWISPANRHLNV VTGINNGLGVNPFPTWDWNVLLWDSADPLMVPFFSTLNRFVGVFASFWLVLGLWYSNAFNTGYLPINTNRVYDHF AQLYNITRATDDHGLFNQTKYERYSPPFLGAGNIVIYVFFFGIYTSTLTYAALYHRHQIAMGFKALWRSLRRRQP PRRHSLDVHSRLMAAYPEVPDWWYLACLVCAMAFGVAAIAAWNTHTSPVVVLYGLALCVVFVIPVGIIKAMTGIE VTLNVLAEFVGGSWVDGNALAMNYFKSFGYVTCAHAIWFCNDLKLAHYVKIPPRHTFVAQMAATFVSTLVCIGVL NFQMLSIDDVCTPYAQYKLTCPGVNTFFTASVLWGTVGPDRIFGHRGQYSAALVGFPLGVVIVVFFWVLGRRFPR WDWVRQIHPVAIMYGGIVWAPYNMSYVWPSVPVAWFSWIYLRSRYLGLWSKYNFVLSAAWSCGIAIAGIIIFFAL QYTGTDLDWWGNRVVDAGCEGKACTLKTLAPGEYFGPRIGDF* |
| Coding | >Ophcf2|00650 ATGGCCTCCTCTCCCTCCTCGTCCTCCTCTCCGGACGACGACGACAAGAACCGGGCCGTCGCCAACGAAAAGTCA CGAGACTCGCCCTTTGCCTATGACGAGGACGACGACGACGATGTATGCGCTGGCAGGCTGCGGGCTACGACGGAG CATGACCTCGACGTCACGGAAGACGACCTCCTCGAAGCAAAGGAGCTGGCTTCGCAGTACACGCTCCAGCAAGTG CGTCAGGTCATGATCCGGGTGCGGCGCGTACACGAAAAGGATCCCAACTTCCCCGCCGCCGTCATGGGAAAGATC CAGGCTTTCCTCGACAACGAGGCCGTCTTCGCCCGGCCCGAGAAGCACCAACACCTGATACAGGAGATGAAGCTC GAGGCCGCCCTCGTAAGCTGCAACAGTCCCTACGCCGAGGTACGGGCCGTCGTCAGCAACCGCGACGATGTCTCA ACACCTTGCTCGACGATACGTTCGTGGTCCATCGGCCTCGTCTTCGCCGTCCTCCTCGCCTTCGTCAACCAGCTC TTCGAGATTCGACAGCCCGCCATCCGCGTCATGGCAAACGTCGCCCAGCTGCTCGCCTATCCGCTCGGCAAGGCG GCCGAGAACTGGCTACCGGACCGGGCGGTGACCGTCTGGGGCGTCCGCCACTCGCTCAACCCGGGTCCCTTCTCC AAGAAGGAGCACATGCTCATCACCATCATGGCAAACGTGGCCTACAACACGCCCTACACGAACTACATCATCTGG GTCCAATTCCTGCCCCAGTACTTCGACCAGCCCTACGCCTCCCACTTCGCCTACCAGCTCCTCATCGCCCTCGCC ACAAACTTCATCGGCTATGGCATCGCCGGAGTCTGCCGCCGCTTCCTCGTCTACCCTTCCTACTGCGTCTGGCCG GCCTCCCTCGTCACCATCGCCCTCAACTCGGCCTTCCACACCGACGTCAACCCGCCCGTCGAAGGGCCCCTGCGC CGCGTCTGGCGACTCTCGCGCATCCGCTTCTTCTACCTCATGTTCGCCTGCATGTTCCTCTGGTTCTGGCTGCCC GGATACGTCTGGGTCGGCCTGTCCAAGTTCAACTGGCTCGGCTGGATATCGCCGGCCAACCGCCACCTCAACGTG GTGACGGGCATCAACAACGGCCTCGGCGTCAACCCCTTCCCGACCTGGGACTGGAACGTCCTGCTCTGGGACTCG GCGGACCCTCTCATGGTGCCCTTCTTCAGCACGCTCAACCGCTTCGTCGGCGTCTTCGCCTCCTTCTGGCTCGTC CTCGGCCTCTGGTACTCCAACGCCTTCAACACGGGCTACCTCCCCATCAACACCAACCGCGTCTACGACCACTTC GCCCAGCTCTACAACATCACGCGCGCCACGGACGACCACGGCCTCTTCAACCAGACAAAGTACGAGCGGTACTCG CCACCCTTCCTCGGCGCCGGCAACATCGTCATCTACGTCTTCTTCTTCGGCATCTACACCTCGACCCTGACGTAC GCCGCCCTCTACCACCGCCATCAGATCGCAATGGGCTTCAAGGCCCTCTGGCGCAGTCTCCGTCGCCGCCAGCCT CCCCGTCGCCACTCCCTAGACGTCCACAGCCGCCTCATGGCCGCCTACCCCGAGGTGCCCGACTGGTGGTATCTG GCCTGCCTCGTCTGCGCCATGGCCTTTGGCGTCGCCGCCATAGCCGCCTGGAACACGCACACGTCGCCCGTCGTC GTCCTCTACGGCCTCGCCCTCTGCGTCGTCTTCGTCATCCCCGTCGGCATCATCAAGGCCATGACGGGCATCGAG GTGACGCTCAACGTCCTGGCCGAGTTCGTAGGCGGTTCCTGGGTGGACGGGAACGCGCTGGCCATGAACTACTTC AAGTCCTTCGGCTACGTCACCTGCGCCCACGCCATCTGGTTCTGCAACGACCTCAAGCTGGCTCACTACGTCAAG ATCCCCCCCAGACACACCTTCGTCGCCCAGATGGCGGCCACCTTCGTCAGCACCCTCGTCTGCATCGGCGTCCTC AACTTCCAGATGCTCAGCATCGACGACGTCTGCACCCCCTACGCCCAGTACAAGCTGACGTGCCCCGGCGTCAAC ACCTTCTTCACCGCCTCGGTCCTCTGGGGAACGGTCGGCCCGGACCGCATCTTCGGTCACCGAGGCCAGTACAGC GCCGCCCTCGTCGGCTTCCCCCTCGGCGTCGTCATCGTCGTCTTCTTCTGGGTCCTCGGCCGCCGTTTCCCCCGC TGGGATTGGGTCCGCCAGATCCATCCCGTGGCCATCATGTACGGCGGCATCGTCTGGGCCCCCTACAACATGTCG TACGTCTGGCCGTCGGTGCCCGTCGCCTGGTTCTCGTGGATCTACCTCAGGTCGCGCTATCTCGGCCTGTGGTCC AAGTACAACTTCGTCCTCTCCGCCGCCTGGTCATGCGGCATCGCCATCGCCGGCATCATCATCTTCTTCGCCCTG CAATACACGGGCACCGACCTCGACTGGTGGGGCAACCGCGTCGTCGACGCCGGCTGCGAGGGAAAGGCCTGCACC CTCAAGACTCTCGCCCCCGGCGAGTATTTCGGCCCACGCATCGGTGATTTCTAG |
| Transcript | >Ophcf2|00650 ATGGCCTCCTCTCCCTCCTCGTCCTCCTCTCCGGACGACGACGACAAGAACCGGGCCGTCGCCAACGAAAAGTCA CGAGACTCGCCCTTTGCCTATGACGAGGACGACGACGACGATGTATGCGCTGGCAGGCTGCGGGCTACGACGGAG CATGACCTCGACGTCACGGAAGACGACCTCCTCGAAGCAAAGGAGCTGGCTTCGCAGTACACGCTCCAGCAAGTG CGTCAGGTCATGATCCGGGTGCGGCGCGTACACGAAAAGGATCCCAACTTCCCCGCCGCCGTCATGGGAAAGATC CAGGCTTTCCTCGACAACGAGGCCGTCTTCGCCCGGCCCGAGAAGCACCAACACCTGATACAGGAGATGAAGCTC GAGGCCGCCCTCGTAAGCTGCAACAGTCCCTACGCCGAGGTACGGGCCGTCGTCAGCAACCGCGACGATGTCTCA ACACCTTGCTCGACGATACGTTCGTGGTCCATCGGCCTCGTCTTCGCCGTCCTCCTCGCCTTCGTCAACCAGCTC TTCGAGATTCGACAGCCCGCCATCCGCGTCATGGCAAACGTCGCCCAGCTGCTCGCCTATCCGCTCGGCAAGGCG GCCGAGAACTGGCTACCGGACCGGGCGGTGACCGTCTGGGGCGTCCGCCACTCGCTCAACCCGGGTCCCTTCTCC AAGAAGGAGCACATGCTCATCACCATCATGGCAAACGTGGCCTACAACACGCCCTACACGAACTACATCATCTGG GTCCAATTCCTGCCCCAGTACTTCGACCAGCCCTACGCCTCCCACTTCGCCTACCAGCTCCTCATCGCCCTCGCC ACAAACTTCATCGGCTATGGCATCGCCGGAGTCTGCCGCCGCTTCCTCGTCTACCCTTCCTACTGCGTCTGGCCG GCCTCCCTCGTCACCATCGCCCTCAACTCGGCCTTCCACACCGACGTCAACCCGCCCGTCGAAGGGCCCCTGCGC CGCGTCTGGCGACTCTCGCGCATCCGCTTCTTCTACCTCATGTTCGCCTGCATGTTCCTCTGGTTCTGGCTGCCC GGATACGTCTGGGTCGGCCTGTCCAAGTTCAACTGGCTCGGCTGGATATCGCCGGCCAACCGCCACCTCAACGTG GTGACGGGCATCAACAACGGCCTCGGCGTCAACCCCTTCCCGACCTGGGACTGGAACGTCCTGCTCTGGGACTCG GCGGACCCTCTCATGGTGCCCTTCTTCAGCACGCTCAACCGCTTCGTCGGCGTCTTCGCCTCCTTCTGGCTCGTC CTCGGCCTCTGGTACTCCAACGCCTTCAACACGGGCTACCTCCCCATCAACACCAACCGCGTCTACGACCACTTC GCCCAGCTCTACAACATCACGCGCGCCACGGACGACCACGGCCTCTTCAACCAGACAAAGTACGAGCGGTACTCG CCACCCTTCCTCGGCGCCGGCAACATCGTCATCTACGTCTTCTTCTTCGGCATCTACACCTCGACCCTGACGTAC GCCGCCCTCTACCACCGCCATCAGATCGCAATGGGCTTCAAGGCCCTCTGGCGCAGTCTCCGTCGCCGCCAGCCT CCCCGTCGCCACTCCCTAGACGTCCACAGCCGCCTCATGGCCGCCTACCCCGAGGTGCCCGACTGGTGGTATCTG GCCTGCCTCGTCTGCGCCATGGCCTTTGGCGTCGCCGCCATAGCCGCCTGGAACACGCACACGTCGCCCGTCGTC GTCCTCTACGGCCTCGCCCTCTGCGTCGTCTTCGTCATCCCCGTCGGCATCATCAAGGCCATGACGGGCATCGAG GTGACGCTCAACGTCCTGGCCGAGTTCGTAGGCGGTTCCTGGGTGGACGGGAACGCGCTGGCCATGAACTACTTC AAGTCCTTCGGCTACGTCACCTGCGCCCACGCCATCTGGTTCTGCAACGACCTCAAGCTGGCTCACTACGTCAAG ATCCCCCCCAGACACACCTTCGTCGCCCAGATGGCGGCCACCTTCGTCAGCACCCTCGTCTGCATCGGCGTCCTC AACTTCCAGATGCTCAGCATCGACGACGTCTGCACCCCCTACGCCCAGTACAAGCTGACGTGCCCCGGCGTCAAC ACCTTCTTCACCGCCTCGGTCCTCTGGGGAACGGTCGGCCCGGACCGCATCTTCGGTCACCGAGGCCAGTACAGC GCCGCCCTCGTCGGCTTCCCCCTCGGCGTCGTCATCGTCGTCTTCTTCTGGGTCCTCGGCCGCCGTTTCCCCCGC TGGGATTGGGTCCGCCAGATCCATCCCGTGGCCATCATGTACGGCGGCATCGTCTGGGCCCCCTACAACATGTCG TACGTCTGGCCGTCGGTGCCCGTCGCCTGGTTCTCGTGGATCTACCTCAGGTCGCGCTATCTCGGCCTGTGGTCC AAGTACAACTTCGTCCTCTCCGCCGCCTGGTCATGCGGCATCGCCATCGCCGGCATCATCATCTTCTTCGCCCTG CAATACACGGGCACCGACCTCGACTGGTGGGGCAACCGCGTCGTCGACGCCGGCTGCGAGGGAAAGGCCTGCACC CTCAAGACTCTCGCCCCCGGCGAGTATTTCGGCCCACGCATCGGTGATTTCTAG |
| Gene | >Ophcf2|00650 ATGGCCTCCTCTCCCTCCTCGTCCTCCTCTCCGGACGACGACGACAAGAACCGGGCCGTCGCCAACGAAAAGTCA CGAGACTCGCCCTTTGCCTATGACGAGGACGACGACGACGATGTATGCGCTGGCAGGCTGCGGGCTACGACGGAG CATGACCTCGACGTCACGGAAGACGACCTCCTCGAAGCAAAGGAGCTGGCTTCGCAGTACACGCTCCAGCAAGTG CGTCAGGTCATGATCCGGGTGCGGCGCGTACACGAAAAGGATCCCAACTTCCCCGCCGCCGTCATGGGAAAGATC CAGGCTTTCCTCGACAACGAGGCCGTCTTCGCCCGGCCCGAGAAGCACCAACACCTGATACAGGAGATGAAGCTC GAGGCCGCCCTCGTAAGCTGCAACAGTCCCTACGCCGAGGTACGGGCCGTCGTCAGCAACCGCGACGATGTCTCA ACACCTTGCTCGACGATACGTTCGTGGTCCATCGGCCTCGTCTTCGCCGTCCTCCTCGCCTTCGTCAACCAGCTC TTCGAGATTCGACAGCCCGCCATCCGCGTCATGGCAAACGTCGCCCAGCTGCTCGCCTATCCGCTCGGCAAGGCG GCCGAGAACTGGCTACCGGACCGGGCGGTGACCGTCTGGGGCGTCCGCCACTCGCTCAACCCGGGTCCCTTCTCC AAGAAGGAGCACATGCTCATCACCATCATGGCAAACGTGGCCTACAACACGCCCTACACGAACTACATCATCTGG GTCCAATTCCTGCCCCAGTACTTCGACCAGCCCTACGCCTCCCACTTCGCCTACCAGCTCCTCATCGCCCTCGCC ACAAACTTCATCGGCTATGGCATCGCCGGAGTCTGCCGCCGCTTCCTCGTCTACCCTTCCTACTGCGTCTGGCCG GCCTCCCTCGTCACCATCGCCCTCAACTCGGCCTTCCACACCGACGTCAACCCGCCCGTCGAAGGGCCCCTGCGC CGCGTCTGGCGACTCTCGCGCATCCGCTTCTTCTACCTCATGTTCGCCTGCATGTTCCTCTGGTTCTGGCTGCCC GGATACGTCTGGGTCGGCCTGTCCAAGTTCAACTGGCTCGGCTGGATATCGCCGGCCAACCGCCACCTCAACGTG GTGACGGGCATCAACAACGGCCTCGGCGTCAACCCCTTCCCGACCTGGGACTGGAACGTCCTGCTCTGGGACTCG GCGGACCCTCTCATGGTGCCCTTCTTCAGCACGCTCAACCGCTTCGTCGGCGTCTTCGCCTCCTTCTGGCTCGTC CTCGGCCTCTGGTACTCCAACGCCTTCAACACGGGCTACCTCCCCATCAACACCAACCGCGTCTACGACCACTTC GCCCAGCTCTACAACATCACGCGCGCCACGGACGACCACGGCCTCTTCAACCAGACAAAGTACGAGCGGTACTCG CCACCCTTCCTCGGCGCCGGCAACATCGTCATCTACGTCTTCTTCTTCGGCATCTACACCTCGACCCTGACGTAC GCCGCCCTCTACCACCGCCATCAGATCGCAATGGGCTTCAAGGCCCTCTGGCGCAGTCTCCGTCGCCGCCAGCCT CCCCGTCGCCACTCCCTAGACGTCCACAGCCGCCTCATGGCCGCCTACCCCGAGGTGCCCGACTGGTGGTATCTG GCCTGCCTCGTCTGCGCCATGGCCTTTGGCGTCGCCGCCATAGCCGCCTGGAACACGCACACGTCGCCCGTCGTC GTCCTCTACGGCCTCGCCCTCTGCGTCGTCTTCGTCATCCCCGTCGGCATCATCAAGGCCATGACGGGCATCGAG GTGACGCTCAACGTCCTGGCCGAGTTCGTAGGCGGTTCCTGGGTGGACGGGAACGCGCTGGCCATGAACTACTTC AAGTCCTTCGGCTACGTCACCTGCGCCCACGCCATCTGGTTCTGCAACGACCTCAAGCTGGCTCACTACGTCAAG ATCCCCCCCAGACACACCTTCGTCGCCCAGATGGCGGCCACCTTCGTCAGCACCCTCGTCTGCATCGGCGTCCTC AACTTCCAGATGCTCAGCATCGACGACGTCTGCACCCCCTACGCCCAGTACAAGCTGACGTGCCCCGGCGTCAAC ACCTTCTTCACCGCCTCGGTCCTCTGGGGAACGGTCGGCCCGGACCGCATCTTCGGTCACCGAGGCCAGTACAGC GCCGCCCTCGTCGGCTTCCCCCTCGGCGTCGTCATCGTCGTCTTCTTCTGGGTCCTCGGCCGCCGTTTCCCCCGC TGGGATTGGGTCCGCCAGATCCATCCCGTGGCCATCATGTACGGCGGCATCGTCTGGGCCCCCTACAACATGTCG TACGTCTGGCCGTCGGTGCCCGTCGCCTGGTTCTCGTGGATCTACCTCAGGTCGCGCTATCTCGGCCTGTGGTCC AAGGTATGCTATGCTATATACGCACACGCACGCACACACTCCTCGTCGACCCTGCAAAAATCAACCACACTGACT CCCTCCCTCGCAGTACAACTTCGTCCTCTCCGCCGCCTGGTCATGCGGCATCGCCATCGCCGGCATCATCATCTT CTTCGCCCTGCAATACACGGGCACCGACCTCGACTGGTGGGGCAACCGCGTCGTCGACGCCGGCTGCGAGGGAAA GGCCTGCACCCTCAAGACTCTCGCCCCCGGCGAGTATTTCGGCCCACGCATCGGTGATTTCTAG |