© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00604 |
| Gene name | |
| Location | scaffold_01:2366869..2369225 |
| Strand | - |
| Gene length (bp) | 2356 |
| Transcript length (bp) | 1839 |
| Coding sequence length (bp) | 1839 |
| Protein length (aa) | 613 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00955 | HCO3_cotransp | HCO3- transporter family | 6.1E-27 | 34 | 193 |
| PF00955 | HCO3_cotransp | HCO3- transporter family | 3.6E-36 | 204 | 476 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006820 | anion transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.1527 | 0.1542 | 0.1161 | 0.4997 | 0.1109 | 0.0134 | 0.2422 | 0.2815 | 0.3411 | 0.0113 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 83 | 22 |
| 2 | 104 | 126 | 22 |
| 3 | 141 | 163 | 22 |
| 4 | 170 | 188 | 18 |
| 5 | 203 | 225 | 22 |
| 6 | 237 | 259 | 22 |
| 7 | 287 | 309 | 22 |
| 8 | 335 | 357 | 22 |
| 9 | 414 | 436 | 22 |
| 10 | 473 | 507 | 34 |
| Orthofinder run ID | 4 |
| Orthogroup | 1131 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00604 MDKTVDAFSRPAPDTPRAPPDEGRCHDPWWRLHLFRGILNDIRRRAPFYPSDWRDAWDYRVVPATIYMYFANILP ALAFSLDISRRCCLLPLRRAAHCHCWRHWLAVVVSPFLSLLTCLTGPITVFNYTVYDIMSPSGVNYIGFMAWIGI WALILHWILAITNSCNWLRWVTRFPCDIFGFYVAFIYLQKGIQVLDRLGDGTSFYLSIVAALLVFMSAYICGQLG TSSLFRHPIRVFLKDYGTPLTLIFFTAFVHFGRMNQVELERLPTGIAFMPTSGRAWLVDFWTLSVGQVFTALPFA ILLTILFWFDHNVSSLMAQGSEFPLRKPAGFHWDLFLLGVTTGVAGILGLPFPNGLIPQAPFHTDSLCVTKPVRK LDGQGEDRGDYAFEASHVVEQRVSNLAQGLLTLGTMTGPLLVVIHLIPHGVLAGLFFVMGVQALEANGITAKLLF LCRDKNLTPADQPLRTIKRRVAIWLFVAIELAGFGATFAVTQTVAAVGFPIFIIALIPVRTKLLPLIFRPEELAV LDAPTASDFIMEGIGGGKKNSSSSSHTASDAPSPLRSRSRSPSASRGENQQAGAATGRKTVEDAAELGQAQSEQR SAMRRRGDDIHG* |
| Coding | >Ophcf2|00604 ATGGACAAGACAGTCGACGCCTTCTCACGGCCAGCCCCGGACACGCCACGAGCACCGCCCGATGAAGGCCGTTGT CATGATCCCTGGTGGCGTCTTCATCTCTTCCGCGGCATTCTCAACGATATCCGCCGGAGGGCTCCTTTCTACCCG AGCGACTGGCGCGATGCCTGGGATTATCGCGTCGTCCCGGCCACAATTTACATGTATTTCGCAAACATTCTCCCG GCCCTTGCCTTTTCCCTCGACATTTCTCGGCGCTGTTGTCTTCTCCCTCTTCGCCGCGCAGCCCATTGTCATTGT TGGCGTCACTGGTTAGCTGTTGTAGTCTCCCCTTTCCTTTCTCTGCTGACCTGCCTCACTGGCCCCATAACCGTC TTCAACTACACAGTTTACGACATCATGAGCCCTAGTGGCGTCAACTACATAGGGTTCATGGCCTGGATCGGCATA TGGGCGCTTATCCTTCACTGGATCCTAGCCATTACAAATTCGTGTAACTGGCTCCGCTGGGTTACGCGATTCCCC TGCGACATCTTCGGCTTCTATGTCGCCTTCATCTATCTTCAGAAGGGTATCCAGGTCCTAGACCGCCTCGGAGAC GGTACTTCCTTCTATCTGTCCATAGTCGCAGCCCTACTGGTATTCATGTCGGCCTACATCTGCGGCCAACTGGGA ACCAGCAGCCTATTCAGACATCCGATCCGAGTCTTCCTCAAAGACTACGGCACTCCTCTGACCCTCATCTTCTTC ACGGCCTTCGTCCACTTCGGCCGCATGAACCAAGTTGAACTCGAGAGACTACCGACGGGCATTGCCTTTATGCCC ACCAGTGGTCGAGCCTGGCTCGTCGACTTTTGGACCTTGAGCGTGGGCCAAGTATTTACGGCTCTGCCGTTTGCC ATCCTACTCACCATTCTCTTCTGGTTCGATCACAATGTTTCTTCCCTCATGGCGCAAGGAAGTGAGTTTCCGCTG CGCAAGCCGGCTGGCTTTCACTGGGATCTCTTTCTCCTCGGTGTCACAACTGGAGTCGCAGGAATTCTCGGCCTG CCGTTCCCCAACGGACTCATTCCGCAGGCCCCATTTCACACCGATTCTCTCTGCGTGACGAAGCCGGTGAGAAAG CTGGACGGCCAGGGTGAGGATAGAGGCGACTACGCCTTCGAGGCTTCGCATGTCGTCGAGCAGCGCGTATCAAAC CTTGCACAGGGGCTCCTGACGCTCGGCACAATGACCGGGCCGTTGCTCGTCGTCATTCATCTCATCCCCCATGGC GTCCTCGCCGGCCTCTTCTTCGTCATGGGCGTCCAGGCGCTCGAGGCCAACGGCATCACCGCCAAGTTGCTGTTT CTCTGTCGCGACAAGAATCTGACGCCCGCGGACCAACCTCTCAGGACGATTAAGCGTCGCGTCGCCATTTGGCTC TTTGTCGCCATCGAGCTCGCTGGCTTCGGTGCCACCTTTGCCGTCACCCAAACGGTTGCTGCTGTCGGCTTCCCC ATCTTCATCATTGCCCTCATTCCAGTCCGCACAAAGCTTCTCCCGCTCATCTTCCGTCCTGAGGAGCTGGCTGTG CTGGACGCGCCGACTGCCTCGGACTTTATCATGGAGGGCATCGGAGGCGGTAAGAAGAATAGCAGCAGCAGTAGC CACACGGCTTCAGATGCCCCTTCGCCTTTGAGGTCGCGGTCGCGGTCGCCTTCCGCCAGCCGAGGTGAAAATCAG CAGGCGGGCGCAGCGACCGGTCGGAAGACGGTGGAGGATGCGGCTGAGCTGGGGCAGGCGCAGAGCGAGCAGAGA TCGGCCATGAGGAGGAGAGGCGATGATATCCATGGATAG |
| Transcript | >Ophcf2|00604 ATGGACAAGACAGTCGACGCCTTCTCACGGCCAGCCCCGGACACGCCACGAGCACCGCCCGATGAAGGCCGTTGT CATGATCCCTGGTGGCGTCTTCATCTCTTCCGCGGCATTCTCAACGATATCCGCCGGAGGGCTCCTTTCTACCCG AGCGACTGGCGCGATGCCTGGGATTATCGCGTCGTCCCGGCCACAATTTACATGTATTTCGCAAACATTCTCCCG GCCCTTGCCTTTTCCCTCGACATTTCTCGGCGCTGTTGTCTTCTCCCTCTTCGCCGCGCAGCCCATTGTCATTGT TGGCGTCACTGGTTAGCTGTTGTAGTCTCCCCTTTCCTTTCTCTGCTGACCTGCCTCACTGGCCCCATAACCGTC TTCAACTACACAGTTTACGACATCATGAGCCCTAGTGGCGTCAACTACATAGGGTTCATGGCCTGGATCGGCATA TGGGCGCTTATCCTTCACTGGATCCTAGCCATTACAAATTCGTGTAACTGGCTCCGCTGGGTTACGCGATTCCCC TGCGACATCTTCGGCTTCTATGTCGCCTTCATCTATCTTCAGAAGGGTATCCAGGTCCTAGACCGCCTCGGAGAC GGTACTTCCTTCTATCTGTCCATAGTCGCAGCCCTACTGGTATTCATGTCGGCCTACATCTGCGGCCAACTGGGA ACCAGCAGCCTATTCAGACATCCGATCCGAGTCTTCCTCAAAGACTACGGCACTCCTCTGACCCTCATCTTCTTC ACGGCCTTCGTCCACTTCGGCCGCATGAACCAAGTTGAACTCGAGAGACTACCGACGGGCATTGCCTTTATGCCC ACCAGTGGTCGAGCCTGGCTCGTCGACTTTTGGACCTTGAGCGTGGGCCAAGTATTTACGGCTCTGCCGTTTGCC ATCCTACTCACCATTCTCTTCTGGTTCGATCACAATGTTTCTTCCCTCATGGCGCAAGGAAGTGAGTTTCCGCTG CGCAAGCCGGCTGGCTTTCACTGGGATCTCTTTCTCCTCGGTGTCACAACTGGAGTCGCAGGAATTCTCGGCCTG CCGTTCCCCAACGGACTCATTCCGCAGGCCCCATTTCACACCGATTCTCTCTGCGTGACGAAGCCGGTGAGAAAG CTGGACGGCCAGGGTGAGGATAGAGGCGACTACGCCTTCGAGGCTTCGCATGTCGTCGAGCAGCGCGTATCAAAC CTTGCACAGGGGCTCCTGACGCTCGGCACAATGACCGGGCCGTTGCTCGTCGTCATTCATCTCATCCCCCATGGC GTCCTCGCCGGCCTCTTCTTCGTCATGGGCGTCCAGGCGCTCGAGGCCAACGGCATCACCGCCAAGTTGCTGTTT CTCTGTCGCGACAAGAATCTGACGCCCGCGGACCAACCTCTCAGGACGATTAAGCGTCGCGTCGCCATTTGGCTC TTTGTCGCCATCGAGCTCGCTGGCTTCGGTGCCACCTTTGCCGTCACCCAAACGGTTGCTGCTGTCGGCTTCCCC ATCTTCATCATTGCCCTCATTCCAGTCCGCACAAAGCTTCTCCCGCTCATCTTCCGTCCTGAGGAGCTGGCTGTG CTGGACGCGCCGACTGCCTCGGACTTTATCATGGAGGGCATCGGAGGCGGTAAGAAGAATAGCAGCAGCAGTAGC CACACGGCTTCAGATGCCCCTTCGCCTTTGAGGTCGCGGTCGCGGTCGCCTTCCGCCAGCCGAGGTGAAAATCAG CAGGCGGGCGCAGCGACCGGTCGGAAGACGGTGGAGGATGCGGCTGAGCTGGGGCAGGCGCAGAGCGAGCAGAGA TCGGCCATGAGGAGGAGAGGCGATGATATCCATGGATAG |
| Gene | >Ophcf2|00604 ATGGACAAGACAGTCGACGCCTTCTCACGGCCAGCCCCGGACACGCCACGAGCACCGCCCGATGAAGGCCGTTGT CATGATCCCTGGTGGCGTCTTCATCTCTTCCGCGGCATTCTCAACGATATCCGCCGGAGGGCTCCTTTCTACCCG AGCGACTGGCGCGATGCCTGGGATTATCGCGTCGTCCCGGCCACAATTTACATGTATTTCGCAAAGTAGGGCTTT TCCTGATTTGCGGCAACTTGCGGCGAAGCTCATTGGCGCCTCGCAGCATTCTCCCGGCCCTTGCCTTTTCCCTCG ACATGTTCCAGAAGACGGGATCCAACTACGGCGTCAATGAGGTCCTGCTGGCTTCAGTTCTCGGCGCTGTTGTCT TCTCCCTCTTCGCCGCGCAGCCCATTGTCATTGTTGGCGTCACTGGTTAGCTGTTGTAGTCTCCCCTTTCCTTTC TCTGCTGACCTGCCTCACTGGCCCCATAACCGTCTTCAACTAGTTCGTGCCTGTACCCTCTTTGCTTTCTCTGTC TTACAGCGCTTTAACACTCGCATAGCACAGTTTACGACATCATGAGCCCTAGTGGCGTCAACTACATAGGGTTCA TGGCCTGGATCGGCATGTGAGCACATCTCTTACACCTCGATGAACCCCTTTGAGCCCACTGTGCCCGTCTCATCT TACGCTTTCCAGATGGGCGCTTATCCTTCACTGGATCCTAGCCATTACAAATTCGTGTAACTGGCTCCGCTGGGT TACGCGATTCCCCTGCGACATCTTCGGCTTCTATGTCGCCTTCATCTATCTTCAGAAGGGTATCCAGGTCCTAGA CCGCCTCGGAGACGGTACTTCCTTCTATCTGTCCATAGTCGCAGCCCTACTGGTATTCATGTCGGCCTACATCTG CGGCCAACTGGGAACCAGCAGCCTATTCAGACATCCGATCCGAGTCTTCCTCAAAGACTACGGCACTCCTCTGAC CCTCATCTTCTTCACGGCCTTCGTCCACTTCGGCCGCATGAACCAAGTTGAACTCGAGAGACTACCGACGGGCAT TGCCTTTATGCCCACCAGTGGTCGAGCCTGGCTCGTCGACTTTTGGACCTTGAGCGTGGGCCAAGTATTTACGGC TCTGCCGTTTGCCATCCTACTCACCATTCTCTTCTGGTTCGATCACAATGGTACGCATCGATTTAGAGGTGACTT TCGCTCAGCGGCTCAGGCTGATACATAACTCTTCTTATCAGTTTCTTCCCTCATGGCGCAAGGAAGTGAGTTTCC GCTGCGCAAGCCGGCTGGCTTTCACTGGGATCTCTTTCTCCTCGGTGTCACAACTGGAGTCGCAGGAATTCTCGG CCTGCCGTTCCCCAACGGACTCATTCCGCAGGCCCCATTTCACACCGATTCTCTCTGCGTGACGAAGCCGGTGAG AAAGCTGGACGGCCAGGGTGAGGATAGAGGCGACTACGCCTTCGAGGCTTCGCATGTCGTCGAGCAGCGCGTATC AAACCTTGCACAGGGGCTCCTGACGCTCGGCACAATGACCGGGCCGTTGCTCGTCGTCATTCATCTCATCCCCCA TGGCGTCCTCGCCGGCCTCTTCTTCGTCATGGGCGTCCAGGCGCTCGAGGCCAACGGCATCACCGCCAAGTTGCT GTTTCTCTGTCGCGACAAGAATCTGACGCCCGCGGACCAACCTCTCAGGACGATTAAGCGTCGCGTCGCCATTTG GCTCTTTGTCGCCATCGAGCTCGCTGGCTTCGGTGCCACCTTTGCCGTCACCCAAACGGTTGCTGCTGTCGGCTT CCCCATCTTCATCATTGCCCTCATTCCAGTCCGCACAAAGCTTCTCCCGCTCATCTTCCGTCCTGAGGAGCTGGC TGTGCTGGACGCGCCGACTGCCTCGGACTTTATCATGGAGGGCATCGGAGGCGGTAAGAAGAATAGCAGCAGCAG TAGCCACACGGCTTCAGATGCCCCTTCGCCTTTGAGGTCGCGGTCGCGGTCGCCTTCCGCCAGCCGAGGTGAAAA TCAGCAGGCGGGCGCAGCGACCGGTCGGAAGACGGTGGAGGATGCGGCTGAGCTGGGGCAGGCGCAGAGCGAGCA GAGATCGGCCATGAGGAGGAGAGGCGATGGTCGGTAGAAGTTGCTCCTAACTTGCTGACCGGCTCTCAGGATGGT GACATGATTTTGACGTTGGTGTGGATTCTGACAAGATATCCATGGTGAGTTTGACTTGGTCTGCTTATGAGATAT GCGCTCTTTCTCTTGTCTTTCCGTTCTTCGTTTCACCTTGGCGTTACGAAGTTGAGATGACTTCCTCTGCCATGG AAAGTCTAGAGTTGATGACGGCACAGGATAG |