Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00584
Gene name
Locationscaffold_01:2301141..2301553
Strand-
Gene length (bp)412
Transcript length (bp)297
Coding sequence length (bp)297
Protein length (aa) 99

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01679 Pmp3 Proteolipid membrane potential modulator 1.9E-19 8 54

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 7 25 18
2 35 57 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00584
MGVASAVLVVLITILFPPIGVWAVAGCGMDLFINICLTILGYIPGHIHAFYIEYVFYDRREQAREGRYPTGRAPG
VYSDNVQTGGQGYGTMAQPTGQA*
Coding >Ophcf2|00584
ATGGGCGTCGCATCAGCCGTACTCGTCGTTCTCATAACCATTCTTTTCCCTCCCATCGGCGTGTGGGCAGTGGCA
GGATGCGGCATGGACCTCTTCATCAACATTTGCCTGACAATTCTCGGCTACATCCCCGGCCACATCCACGCCTTT
TACATCGAATACGTCTTCTACGATCGCCGTGAGCAGGCCCGAGAGGGACGTTATCCCACCGGCCGCGCCCCGGGC
GTCTACTCGGACAACGTCCAGACGGGCGGGCAAGGCTACGGCACCATGGCCCAGCCTACGGGCCAAGCGTAG
Transcript >Ophcf2|00584
ATGGGCGTCGCATCAGCCGTACTCGTCGTTCTCATAACCATTCTTTTCCCTCCCATCGGCGTGTGGGCAGTGGCA
GGATGCGGCATGGACCTCTTCATCAACATTTGCCTGACAATTCTCGGCTACATCCCCGGCCACATCCACGCCTTT
TACATCGAATACGTCTTCTACGATCGCCGTGAGCAGGCCCGAGAGGGACGTTATCCCACCGGCCGCGCCCCGGGC
GTCTACTCGGACAACGTCCAGACGGGCGGGCAAGGCTACGGCACCATGGCCCAGCCTACGGGCCAAGCGTAG
Gene >Ophcf2|00584
ATGGGCGTCGCATCAGCCGTACTCGTCGTTCTCATAACCATTCTTTGTACGTCGTCGACACGATATGCACGGGGA
GGAGGTGATGGCTGACTAGACGAACAGTCCCTCCCATCGGCGTGTGGGCAGTGGCAGGATGCGGCATGGGTACGC
AACTACGCATACATATCCGACTATATCTACTCGGACGTTACTGACGGCGACAGACCTCTTCATCAACATTTGCCT
GACAATTCTCGGCTACATCCCCGGCCACATCCACGCCTTTTACATCGAATACGTCTTCTACGATCGCCGTGAGCA
GGCCCGAGAGGGACGTTATCCCACCGGCCGCGCCCCGGGCGTCTACTCGGACAACGTCCAGACGGGCGGGCAAGG
CTACGGCACCATGGCCCAGCCTACGGGCCAAGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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