Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|00566
Gene name
Locationscaffold_01:2251687..2252323
Strand-
Gene length (bp)636
Transcript length (bp)555
Coding sequence length (bp)555
Protein length (aa) 185

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09801 SYS1 Integral membrane protein S linking to the trans Golgi network 4.5E-45 13 155

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.5

Transmembrane Domains

Domain # Start End Length
1 32 51 19
2 71 93 22
3 98 120 22
4 125 147 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|00566
MSRRRRPPRAGALSDLQPAKVATQIALVQTTFYASSLVLMLFTALVAGMPFGPDLVLGWEAVRGDTTRGWLLALV
WLLDGGFVTAVAIVVLVARSKLVVDFAVTVHFLHLVFTTVYAGALPSHSMWWLAMASSSATAIALATWGCRYREL
QPVFFGGQRVRAGGGEEDGRRAGEFELVHMKHGD*
Coding >Ophcf2|00566
ATGTCCCGCCGTCGCCGCCCCCCCCGCGCAGGAGCCCTCTCCGACCTCCAACCCGCCAAAGTCGCCACGCAAATC
GCCCTCGTGCAAACCACCTTCTACGCCTCGTCCCTCGTCCTCATGCTCTTCACCGCGCTGGTGGCCGGCATGCCC
TTTGGCCCGGACCTGGTGCTGGGCTGGGAGGCCGTGAGGGGGGATACGACGCGGGGGTGGTTGCTTGCTCTGGTG
TGGCTTCTTGATGGGGGGTTCGTCACGGCGGTTGCCATTGTTGTTTTGGTGGCGAGGAGTAAACTCGTGGTTGAC
TTTGCCGTCACGGTACATTTCCTGCACCTCGTCTTCACGACGGTTTACGCCGGGGCTTTGCCGTCGCATTCCATG
TGGTGGCTTGCCATGGCTTCCTCGTCCGCCACGGCCATAGCGTTGGCGACGTGGGGGTGTCGCTATAGGGAGTTG
CAGCCTGTCTTCTTTGGGGGGCAGCGGGTTCGAGCGGGTGGTGGTGAGGAGGATGGGAGGAGGGCGGGCGAGTTT
GAGCTGGTTCATATGAAGCATGGGGATTGA
Transcript >Ophcf2|00566
ATGTCCCGCCGTCGCCGCCCCCCCCGCGCAGGAGCCCTCTCCGACCTCCAACCCGCCAAAGTCGCCACGCAAATC
GCCCTCGTGCAAACCACCTTCTACGCCTCGTCCCTCGTCCTCATGCTCTTCACCGCGCTGGTGGCCGGCATGCCC
TTTGGCCCGGACCTGGTGCTGGGCTGGGAGGCCGTGAGGGGGGATACGACGCGGGGGTGGTTGCTTGCTCTGGTG
TGGCTTCTTGATGGGGGGTTCGTCACGGCGGTTGCCATTGTTGTTTTGGTGGCGAGGAGTAAACTCGTGGTTGAC
TTTGCCGTCACGGTACATTTCCTGCACCTCGTCTTCACGACGGTTTACGCCGGGGCTTTGCCGTCGCATTCCATG
TGGTGGCTTGCCATGGCTTCCTCGTCCGCCACGGCCATAGCGTTGGCGACGTGGGGGTGTCGCTATAGGGAGTTG
CAGCCTGTCTTCTTTGGGGGGCAGCGGGTTCGAGCGGGTGGTGGTGAGGAGGATGGGAGGAGGGCGGGCGAGTTT
GAGCTGGTTCATATGAAGCATGGGGATTGA
Gene >Ophcf2|00566
ATGTCCCGCCGTCGCCGCCCCCCCCGCGCAGGAGCCCTCTCCGACCTCCAACCCGCCAAAGTCGCCACGCAAATC
GCCCTCGTGCAAACCACCTTCTACGCCTCGTCCCTCGTCCTCATGCTCTTCACCGCGCTGGTGGCCGGCATGCCC
TTTGGCCCGGACCTGGTGCTGGGCTGGGAGGCCGTGAGGGGGGATACGACGCGGGGGTGGTTGCTTGCTCTGGTG
TGGCTTCTTGATGGGGGGTTCGTCACGTTTGTCTTCCCTTCCCCCCCTCTTTCTCCGCTTGGTGGATTTGATGGT
GGGGGATTTCCTTGGCTGATGATGGGTTGTAGGGCGGTTGCCATTGTTGTTTTGGTGGCGAGGAGTAAACTCGTG
GTTGACTTTGCCGTCACGGTACATTTCCTGCACCTCGTCTTCACGACGGTTTACGCCGGGGCTTTGCCGTCGCAT
TCCATGTGGTGGCTTGCCATGGCTTCCTCGTCCGCCACGGCCATAGCGTTGGCGACGTGGGGGTGTCGCTATAGG
GAGTTGCAGCCTGTCTTCTTTGGGGGGCAGCGGGTTCGAGCGGGTGGTGGTGAGGAGGATGGGAGGAGGGCGGGC
GAGTTTGAGCTGGTTCATATGAAGCATGGGGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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