© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|00544 |
| Gene name | |
| Location | scaffold_01:2188412..2190788 |
| Strand | - |
| Gene length (bp) | 2376 |
| Transcript length (bp) | 1656 |
| Coding sequence length (bp) | 1656 |
| Protein length (aa) | 552 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 8.1E-46 | 27 | 510 |
| PF00324 | AA_permease | Amino acid permease | 2.0E-12 | 271 | 522 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 27 | 49 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 161 | 183 | 22 |
| 4 | 193 | 215 | 22 |
| 5 | 222 | 239 | 17 |
| 6 | 259 | 281 | 22 |
| 7 | 301 | 323 | 22 |
| 8 | 349 | 371 | 22 |
| 9 | 403 | 425 | 22 |
| 10 | 468 | 490 | 22 |
| 11 | 502 | 521 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00544 MDPNSSDEAQLAALGLRSELRRSFSTLSMLGLAFAVLNTWTAVSASLPVSLTSGGSTSIIWGLFAAGLCNLCIAA SLAELLSAYPTCRGQYHWVAASTTISLIPDFTRSVLTVCLQVSWPSWMPLLSWINGWIAIAGWVRPLHIQISSPV TYILTRPPSQVALVATNALLSSQLIVGIVSLLRPSYEAQRWHQFLIYTALTMLSFLVNAFLNSLLPLIYRGAFAW SIGGFVVACVVMLACSSPDFHSADFVFGQFINRTGWPDGVAWLLGLLQGGLGVTAFDAVAHMIEEIPQASLQGPK IMMLCVIIGTVTGAIFLAVLLSVSGNMESVISSSAGPLLQILVNATGNAAGAVCLVMLPLVCLVFALLSVMTTSS RIIYAFARDGGLPASTVFARVHPKLGQPLNALALSSAVVVLFGLIFMASSSAFNAIMSSSVVALDLSYAMPIAIR CLRGRSRLVQGQWKLSPVLGWTVDVVSLAYITLTTFLFLLPPVRPVTGTNMNYCVVAFAVVIVVSVLQWLVDGRK KFVGPRLGGFDSAEERHEPSEKEEKK* |
| Coding | >Ophcf2|00544 ATGGACCCCAACAGTAGCGACGAAGCTCAACTCGCCGCTCTCGGCCTCCGCTCCGAACTCCGCCGGTCCTTTTCA ACCCTATCTATGCTCGGCCTCGCCTTTGCCGTCCTCAACACCTGGACGGCCGTATCGGCGAGCCTGCCCGTAAGC CTCACTTCCGGAGGCAGCACCAGCATCATCTGGGGTCTCTTTGCGGCTGGGTTGTGCAACCTGTGCATCGCGGCT TCGCTCGCTGAACTCCTCTCGGCATATCCTACTTGCCGGGGGCAGTATCATTGGGTGGCCGCCAGTACGACGATA TCCCTCATCCCCGACTTCACCCGCTCCGTTCTGACAGTTTGCCTTCAAGTCTCGTGGCCTTCATGGATGCCTCTT CTGTCGTGGATCAACGGCTGGATCGCCATTGCCGGCTGGGTTCGGCCTCTACATATCCAGATATCCTCCCCCGTT ACATACATACTGACACGGCCTCCTTCGCAGGTCGCCCTGGTGGCCACCAACGCGCTGCTATCAAGCCAGCTGATA GTCGGCATCGTCTCACTGCTACGTCCCAGCTACGAGGCTCAAAGATGGCATCAGTTCCTCATCTACACTGCCCTG ACGATGCTCTCCTTTCTCGTCAACGCCTTTCTCAACTCGCTGCTCCCGCTCATCTACCGCGGGGCTTTCGCCTGG TCCATCGGTGGCTTCGTCGTTGCCTGTGTCGTCATGCTGGCCTGTTCATCTCCGGACTTTCACTCGGCTGACTTT GTCTTTGGTCAGTTCATCAACCGGACGGGATGGCCGGATGGCGTCGCCTGGCTGCTAGGGCTTCTTCAGGGGGGA CTCGGCGTTACGGCTTTCGATGCCGTAGCACACATGATCGAAGAGATCCCCCAGGCCTCCCTCCAGGGCCCCAAG ATCATGATGCTCTGCGTCATCATCGGCACCGTGACGGGCGCCATCTTCCTCGCCGTCCTTCTCTCCGTCTCGGGA AACATGGAATCCGTCATCAGCTCGAGCGCCGGCCCGCTGCTGCAGATCTTGGTCAACGCCACTGGCAACGCGGCC GGGGCCGTCTGTCTTGTCATGTTGCCTCTGGTCTGCCTCGTCTTTGCTCTTTTGAGTGTCATGACGACGAGCAGT CGTATCATATACGCCTTTGCGCGTGACGGTGGTCTTCCGGCCTCGACCGTCTTCGCCAGAGTCCATCCCAAACTT GGTCAGCCGCTCAACGCCCTGGCTCTCAGCTCGGCCGTCGTCGTTCTGTTCGGGCTGATCTTCATGGCTTCGTCG AGCGCCTTCAACGCCATCATGTCGTCCTCGGTCGTCGCCCTCGACCTCTCGTACGCCATGCCCATCGCCATACGC TGCCTCCGCGGACGTAGTCGGCTCGTTCAGGGGCAATGGAAGCTGTCTCCCGTTCTGGGATGGACAGTTGACGTG GTCTCACTGGCCTACATAACGCTGACGACCTTTTTGTTCCTGCTGCCGCCTGTCCGGCCCGTAACGGGGACTAAC ATGAATTACTGCGTCGTGGCCTTTGCCGTCGTCATCGTCGTCTCCGTCCTTCAATGGCTCGTCGACGGCCGGAAG AAGTTCGTCGGGCCGCGACTCGGCGGCTTCGACTCGGCTGAGGAGAGACACGAGCCGTCTGAGAAGGAGGAGAAG AAGTAG |
| Transcript | >Ophcf2|00544 ATGGACCCCAACAGTAGCGACGAAGCTCAACTCGCCGCTCTCGGCCTCCGCTCCGAACTCCGCCGGTCCTTTTCA ACCCTATCTATGCTCGGCCTCGCCTTTGCCGTCCTCAACACCTGGACGGCCGTATCGGCGAGCCTGCCCGTAAGC CTCACTTCCGGAGGCAGCACCAGCATCATCTGGGGTCTCTTTGCGGCTGGGTTGTGCAACCTGTGCATCGCGGCT TCGCTCGCTGAACTCCTCTCGGCATATCCTACTTGCCGGGGGCAGTATCATTGGGTGGCCGCCAGTACGACGATA TCCCTCATCCCCGACTTCACCCGCTCCGTTCTGACAGTTTGCCTTCAAGTCTCGTGGCCTTCATGGATGCCTCTT CTGTCGTGGATCAACGGCTGGATCGCCATTGCCGGCTGGGTTCGGCCTCTACATATCCAGATATCCTCCCCCGTT ACATACATACTGACACGGCCTCCTTCGCAGGTCGCCCTGGTGGCCACCAACGCGCTGCTATCAAGCCAGCTGATA GTCGGCATCGTCTCACTGCTACGTCCCAGCTACGAGGCTCAAAGATGGCATCAGTTCCTCATCTACACTGCCCTG ACGATGCTCTCCTTTCTCGTCAACGCCTTTCTCAACTCGCTGCTCCCGCTCATCTACCGCGGGGCTTTCGCCTGG TCCATCGGTGGCTTCGTCGTTGCCTGTGTCGTCATGCTGGCCTGTTCATCTCCGGACTTTCACTCGGCTGACTTT GTCTTTGGTCAGTTCATCAACCGGACGGGATGGCCGGATGGCGTCGCCTGGCTGCTAGGGCTTCTTCAGGGGGGA CTCGGCGTTACGGCTTTCGATGCCGTAGCACACATGATCGAAGAGATCCCCCAGGCCTCCCTCCAGGGCCCCAAG ATCATGATGCTCTGCGTCATCATCGGCACCGTGACGGGCGCCATCTTCCTCGCCGTCCTTCTCTCCGTCTCGGGA AACATGGAATCCGTCATCAGCTCGAGCGCCGGCCCGCTGCTGCAGATCTTGGTCAACGCCACTGGCAACGCGGCC GGGGCCGTCTGTCTTGTCATGTTGCCTCTGGTCTGCCTCGTCTTTGCTCTTTTGAGTGTCATGACGACGAGCAGT CGTATCATATACGCCTTTGCGCGTGACGGTGGTCTTCCGGCCTCGACCGTCTTCGCCAGAGTCCATCCCAAACTT GGTCAGCCGCTCAACGCCCTGGCTCTCAGCTCGGCCGTCGTCGTTCTGTTCGGGCTGATCTTCATGGCTTCGTCG AGCGCCTTCAACGCCATCATGTCGTCCTCGGTCGTCGCCCTCGACCTCTCGTACGCCATGCCCATCGCCATACGC TGCCTCCGCGGACGTAGTCGGCTCGTTCAGGGGCAATGGAAGCTGTCTCCCGTTCTGGGATGGACAGTTGACGTG GTCTCACTGGCCTACATAACGCTGACGACCTTTTTGTTCCTGCTGCCGCCTGTCCGGCCCGTAACGGGGACTAAC ATGAATTACTGCGTCGTGGCCTTTGCCGTCGTCATCGTCGTCTCCGTCCTTCAATGGCTCGTCGACGGCCGGAAG AAGTTCGTCGGGCCGCGACTCGGCGGCTTCGACTCGGCTGAGGAGAGACACGAGCCGTCTGAGAAGGAGGAGAAG AAGTAG |
| Gene | >Ophcf2|00544 ATGGACCCCAACAGTAGCGACGAAGCTCAACTCGCCGCTCTCGGCCTCCGCTCCGAACTCCGCCGGTCCTTTTCA ACCCTATCTATGCTCGGCCTCGCCTTTGCCGTCCTCAACGTTGGAAATCGCCCTTCCTCCCCTCCCCTCACCGGC CAGCGGGAAAGCCGAAGCTGACGGTGGCCGCAGACCTGGACGGCCGTATCGGCGAGCCTGCCCGTAAGCCTCACT TCCGGAGGCAGCACCAGCATCATCTGGGGTGCGTCGTGTTCATCGTCTTGCTCACACGTCTCGACGTCTCTGATG GAGAGCCAAGGTCTCTTTGCGGCTGGGTTGTGCAACCTGTGCATCGCGGCTTCGCTCGCTGAACTCCTCTCGGCA TATCCTACGTGAGATTCCTCTTTGTCGTTTACTTGGTTTTTTTTTTTTTCACTCATTTGTTTCAGTTGCCGGGGG CAGTATCATTGGGTGGCCGGTAAGCCCATGTCTTTTCTTTGTCCATGTCTGAAGCTCGTCCTCGGCGCTTACACC GGAATCCGGCAGCCAGTACGACGATATCCCTCATCCCCGACTTCACCCGCTCCGTTCTGACAGTTTGCCTTCAAG TCTCGTGGCCTTCATGGATGCCTCTTCTGTCGTGGATCAACGGCTGGATCGCCATTGCCGGCTGGGTTCGGCCTC TACATATCCAGATATCCTCCCCCGTTACATACATACTGACACGGCCTCCTTCGCAGGTCGCCCTGGTGGCCACCA ACGCGCTGCTATCAAGCCAGCTGATAGTCGGCATCGTCTCACTGCTACGTCCCAGCTACGAGGCTCAAAGATGGC ATCAGTTCCTCATCTACACTGCCCTGACGATGCTCTCCTTTCTCGTCAACGCCTTTCTCAACTCGCTGCTCCCGC TCATCTACCGCGGGGCTTTCGCCTGGTCCATCGGTGGCTTCGTCGTTGCCTGTGTCGTCATGCTGGCCTGTTCAT CTCCGGACTTTCACTCGGCTGACTTTGTCTTTGGTCAGTTCATCAACCGGACGGGATGTAGGTTCTCTTCCTCGG CGTGCTGCTGCTTGACATGGTAGAGCTGAGCCTTTTTTTTTTTTTTGTATCAGGGCCGGATGGCGTCGCCTGGCT GCTAGGGGTGAGCAGCTCGACTTTTCGGATGCCAGTCGGGCTTCTGATGTGCTGTTGGATAGCTTCTTCAGGGGG GACTCGGCGTTACGGCTTTCGTACGTCACCGTCTCCTTCTTTTCGAAAGACGACGAGACTCACGTATGGACAGGA TGCCGTAGCACACATGATCGAAGGTAACACGCCTTTCCTCTCCAACCCTCGTCGATAAACCGCCTCCTCACCAGC TCAGAGATCCCCCAGGCCTCCCTCCAGGGCCCCAAGATCATGATGCTCTGCGTCATCATCGGCACCGTGACGGGC GCCATCTTCCTCGCCGTCCTTCTCTCCGTCTCGGGAAACATGGAATCCGTCATCAGCTCGAGCGCCGGCCCGCTG CTGCAGATCTTGGTCAACGCCACTGGCAACGCGGCCGGGGCCGTCTGTCTTGTCATGTGCGTTCCCCGTGACGGT GTTGTGATGAGTCTGGCTGCTGATCAGGGGTCAGGTTGCCTCTGGTCTGCCTCGTCTTTGCTCTTTTGAGTGTCA TGACGACGAGCAGTCGTATCATATACGCCTTTGCGCGGTACGATCTGTATCCGATGGAAAGACTCGGTTCATGGC TCTGATGGAAGCGCAGTGACGGTGGTCTTCCGGCCTCGACCGTCTTCGCCAGAGTCCATCCCAAACTTGGTCAGC CGCTCAACGCCCTGGCTCTCAGCTCGGCCGTCGTCGTTCTGTTCGGGCTGATCTTCATGGCTTCGTCGAGGTGTG TTTGTGTGTCCGGCGGCGGTAGAGAGGCTACGATACTTACAAGACGAGCGCCTTCAACGCCATCATGTCGTCCTC GGTCGTCGCCCTCGACCTCTCGTACGCCATGCCCATCGCCATACGCTGCCTCCGCGGACGTAGTCGGCTCGTTCA GGGGCAATGGAAGCTGTCTCCCGTTCTGGGATGGACAGTTGACGTGGTCTCACTGGCCTACATAACGCTGACGAC CTTTTTGTTCCTGCTGCCGCCTGTCCGGCCCGTAACGGGGACTAACATGAGTAAGTAGGTGACGCAGGTCAAGTC GTGGTGATCAAAGTACGGAATGATTGAGTTGTTGCTGACGACTCTTCAGATTACTGCGTCGTGGCCTTTGCCGTC GTCATCGTCGTCTCCGTCCTTCAATGGCTCGTCGACGGCCGGAAGAAGTTCGTCGGGCCGCGACTCGGCGGCTTC GACTCGGCTGAGGAGAGACACGAGCCGTCTGAGAAGGAGGAGAAGAAGTAG |