© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00541 |
| Gene name | |
| Location | scaffold_01:2179065..2180752 |
| Strand | + |
| Gene length (bp) | 1687 |
| Transcript length (bp) | 1569 |
| Coding sequence length (bp) | 1569 |
| Protein length (aa) | 523 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 4.4E-13 | 344 | 449 |
| PF08969 | USP8_dimer | USP8 dimerisation domain | 8.8E-06 | 16 | 113 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070122 | obsolete isopeptidase activity | Yes |
| GO:0140492 | metal-dependent deubiquitinase activity | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5605 | 0.5443 | 0.0784 | 0.0906 | 0.0661 | 0.0041 | 0.0331 | 0.2256 | 0.0357 | 0.007 |
| Orthofinder run ID | 4 |
| Orthogroup | 4210 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00541 MEPRSSPRMTRPPPTVSELVAQAENFSFNVNIPFKNWARAAETLFHEASFAISDGNYGRAYMMLYRHSVLVLKCL PSHPQFKDAESRRAFRPLSRRIDLALDHLEHIKPVLEEDCAEWERMAPEVGTGPLQYTTAYADFARRDPTLSGPA RVLDASEHQELAVDLAQKELARRDRVKRVSRLPSSKDDWTTRRESSIDDSSNLQRQMEIARRALEQDDDYDDAAA SPRASSSQPYYPSVARSQPVEYEASEHRRRPSYIPVPSRPPKERIPSQPDVGVRPLESHTYDALPAVPRKIPLEE RPLSTAPERPPRPPKGTSDGPSLPRKDRLAFKPGAYLENGDPIRSVFVPSNLRSTFLEIASKNTAAGLEMCGILC GLPINNALFVRCLLIPDQRCTSDTCETENEGAMFDYCASEDLLVLGWIHTHPTQTCFMSSRDLHTQAGYQVMMPE SIAIVCAPRFKPAYGIFRLTHPPGLDYILDCRHQDTFHQHTISNIYRETEHPEGHVYESDKLPFYVHDLRTK* |
| Coding | >Ophcf2|00541 ATGGAGCCTCGATCCTCGCCACGCATGACTCGTCCGCCGCCGACGGTCAGCGAGCTCGTCGCCCAGGCGGAGAAC TTCAGCTTCAACGTCAACATCCCCTTCAAGAACTGGGCCAGGGCGGCCGAGACGCTGTTTCACGAGGCTTCGTTT GCCATTTCCGACGGCAATTACGGACGAGCGTACATGATGCTTTATCGCCATTCGGTTCTTGTCCTCAAATGCCTA CCGTCGCATCCTCAGTTCAAAGATGCTGAAAGCCGCAGGGCGTTTCGGCCCTTGTCGAGGCGCATAGACCTCGCG CTCGACCATCTGGAGCACATCAAGCCGGTGCTGGAGGAGGATTGCGCAGAGTGGGAACGGATGGCGCCTGAAGTC GGCACCGGCCCTCTGCAATATACGACTGCATATGCAGACTTCGCAAGACGCGACCCCACCTTGAGCGGCCCTGCA AGAGTGCTTGACGCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCGCGGAGAGACAGG GTCAAGCGAGTGTCTCGACTGCCGTCTTCGAAAGATGATTGGACTACGCGTCGCGAAAGCAGCATCGACGATAGC AGCAACCTACAGAGGCAGATGGAAATCGCCCGAAGAGCGTTGGAGCAGGATGACGACTATGACGACGCCGCTGCA TCTCCCCGCGCCTCATCGTCCCAGCCCTATTATCCGTCGGTAGCTAGATCGCAACCGGTCGAATACGAGGCATCG GAGCACCGACGACGACCGTCTTATATACCTGTGCCTTCCCGGCCGCCGAAAGAAAGGATCCCCTCGCAGCCGGAC GTGGGGGTTCGGCCACTCGAGTCGCATACTTACGACGCGCTACCAGCCGTGCCTCGAAAGATCCCCCTAGAGGAG AGACCCCTGTCCACGGCCCCCGAGCGGCCCCCCCGACCGCCCAAAGGAACCTCAGACGGGCCGTCGCTCCCTAGG AAAGATCGGCTGGCCTTTAAGCCCGGGGCGTACTTAGAGAACGGTGACCCGATCCGGTCTGTGTTTGTTCCGAGC AACCTGCGATCGACCTTTCTGGAGATTGCGTCCAAGAACACAGCAGCCGGGCTGGAAATGTGCGGGATACTCTGT GGCTTGCCGATCAACAATGCTCTGTTCGTTCGATGCCTTCTCATCCCCGACCAGCGGTGCACATCGGACACGTGC GAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCGAGCGAGGACCTTCTCGTGCTCGGATGGATCCACACG CACCCGACGCAGACGTGCTTCATGAGCTCGCGAGACCTGCACACGCAGGCGGGCTACCAGGTGATGATGCCTGAG AGCATCGCCATCGTCTGCGCCCCCAGGTTCAAGCCGGCTTATGGCATCTTCCGCCTCACCCACCCGCCTGGGCTA GATTATATCCTCGACTGCAGGCACCAAGACACCTTTCACCAGCACACCATCAGCAATATCTACCGGGAGACGGAG CACCCCGAGGGGCACGTTTACGAGAGCGACAAGCTGCCGTTTTACGTGCATGACCTACGGACGAAATAG |
| Transcript | >Ophcf2|00541 ATGGAGCCTCGATCCTCGCCACGCATGACTCGTCCGCCGCCGACGGTCAGCGAGCTCGTCGCCCAGGCGGAGAAC TTCAGCTTCAACGTCAACATCCCCTTCAAGAACTGGGCCAGGGCGGCCGAGACGCTGTTTCACGAGGCTTCGTTT GCCATTTCCGACGGCAATTACGGACGAGCGTACATGATGCTTTATCGCCATTCGGTTCTTGTCCTCAAATGCCTA CCGTCGCATCCTCAGTTCAAAGATGCTGAAAGCCGCAGGGCGTTTCGGCCCTTGTCGAGGCGCATAGACCTCGCG CTCGACCATCTGGAGCACATCAAGCCGGTGCTGGAGGAGGATTGCGCAGAGTGGGAACGGATGGCGCCTGAAGTC GGCACCGGCCCTCTGCAATATACGACTGCATATGCAGACTTCGCAAGACGCGACCCCACCTTGAGCGGCCCTGCA AGAGTGCTTGACGCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCGCGGAGAGACAGG GTCAAGCGAGTGTCTCGACTGCCGTCTTCGAAAGATGATTGGACTACGCGTCGCGAAAGCAGCATCGACGATAGC AGCAACCTACAGAGGCAGATGGAAATCGCCCGAAGAGCGTTGGAGCAGGATGACGACTATGACGACGCCGCTGCA TCTCCCCGCGCCTCATCGTCCCAGCCCTATTATCCGTCGGTAGCTAGATCGCAACCGGTCGAATACGAGGCATCG GAGCACCGACGACGACCGTCTTATATACCTGTGCCTTCCCGGCCGCCGAAAGAAAGGATCCCCTCGCAGCCGGAC GTGGGGGTTCGGCCACTCGAGTCGCATACTTACGACGCGCTACCAGCCGTGCCTCGAAAGATCCCCCTAGAGGAG AGACCCCTGTCCACGGCCCCCGAGCGGCCCCCCCGACCGCCCAAAGGAACCTCAGACGGGCCGTCGCTCCCTAGG AAAGATCGGCTGGCCTTTAAGCCCGGGGCGTACTTAGAGAACGGTGACCCGATCCGGTCTGTGTTTGTTCCGAGC AACCTGCGATCGACCTTTCTGGAGATTGCGTCCAAGAACACAGCAGCCGGGCTGGAAATGTGCGGGATACTCTGT GGCTTGCCGATCAACAATGCTCTGTTCGTTCGATGCCTTCTCATCCCCGACCAGCGGTGCACATCGGACACGTGC GAGACGGAGAACGAAGGTGCCATGTTCGACTACTGCGCGAGCGAGGACCTTCTCGTGCTCGGATGGATCCACACG CACCCGACGCAGACGTGCTTCATGAGCTCGCGAGACCTGCACACGCAGGCGGGCTACCAGGTGATGATGCCTGAG AGCATCGCCATCGTCTGCGCCCCCAGGTTCAAGCCGGCTTATGGCATCTTCCGCCTCACCCACCCGCCTGGGCTA GATTATATCCTCGACTGCAGGCACCAAGACACCTTTCACCAGCACACCATCAGCAATATCTACCGGGAGACGGAG CACCCCGAGGGGCACGTTTACGAGAGCGACAAGCTGCCGTTTTACGTGCATGACCTACGGACGAAATAG |
| Gene | >Ophcf2|00541 ATGGAGCCTCGATCCTCGCCACGCATGACTCGTCCGCCGCCGACGGTCAGCGAGCTCGTCGCCCAGGCGGAGAAC TTCAGCTTCAACGTCAACATCCCCTTCAAGAACTGGGCCAGGGCGGCCGAGACGCTGTTTCACGAGGTCGGACTC TGGCCGCTCGCTTCGCCATGGCCGGCCTGTCGCTGACCGTCGTCCCCTGAACAGGCTTCGTTTGCCATTTCCGAC GGCAATTACGGACGAGCGTACATGATGCTTTATCGCCATTCGGTTCTTGTCCTCAAATGCCTACCGTCGCATCCT CAGTTCAAAGATGCTGAAAGCCGCAGGGCGTTTCGGCCCTTGTCGAGGCGCATAGACCTCGCGCTCGACCATCTG GAGCACATCAAGCCGGTGCTGGAGGAGGATTGCGCAGAGTGGGAACGGATGGCGCCTGAAGTCGGCACCGGCCCT CTGCAATATACGACTGCATATGCAGACTTCGCAAGACGCGACCCCACCTTGAGCGGCCCTGCAAGAGTGCTTGAC GCGTCCGAGCATCAGGAGCTCGCTGTCGACTTGGCCCAGAAAGAGCTGGCGCGGAGAGACAGGGTCAAGCGAGTG TCTCGACTGCCGTCTTCGAAAGATGATTGGACTACGCGTCGCGAAAGCAGCATCGACGATAGCAGCAACCTACAG AGGCAGATGGAAATCGCCCGAAGAGCGTTGGAGCAGGATGACGACTATGACGACGCCGCTGCATCTCCCCGCGCC TCATCGTCCCAGCCCTATTATCCGTCGGTAGCTAGATCGCAACCGGTCGAATACGAGGCATCGGAGCACCGACGA CGACCGTCTTATATACCTGTGCCTTCCCGGCCGCCGAAAGAAAGGATCCCCTCGCAGCCGGACGTGGGGGTTCGG CCACTCGAGTCGCATACTTACGACGCGCTACCAGCCGTGCCTCGAAAGATCCCCCTAGAGGAGAGACCCCTGTCC ACGGCCCCCGAGCGGCCCCCCCGACCGCCCAAAGGAACCTCAGACGGGCCGTCGCTCCCTAGGAAAGATCGGCTG GCCTTTAAGCCCGGGGCGTACTTAGAGAACGGTGACCCGATCCGGTCTGTGTTTGTTCCGAGCAACCTGCGATCG ACCTTTCTGGAGATTGCGTCCAAGAACACAGCAGCCGGGCTGGAAATGTGCGGGATACTCTGTGGCTTGCCGATC AACAATGCTCTGTTCGTTCGATGCCTTCTCATCCCCGACCAGCGGTGCACATCGGACACGTGCGAGACGGAGAAC GAAGGTGCCATGTTCGACTACTGCGCGAGCGAGGACCTTCTCGTGCTCGGATGGATCCACACGCACCCGACGCAG ACGTGCTTCATGAGCTCGCGAGACCTGCACACGCAGGCGGGCTACCAGGTGATGATGCCTGAGAGCATCGCCATC GTCTGCGCCCCCAGGTTCAAGCCGGCGTGAGTGCAGCTTGTCTACCTAGGGCTTGCAGAGGGGCGCTGACCGGTC TGACAGTTATGGCATCTTCCGCCTCACCCACCCGCCTGGGCTAGATTATATCCTCGACTGCAGGCACCAAGACAC CTTTCACCAGCACACCATCAGCAATATCTACCGGGAGACGGAGCACCCCGAGGGGCACGTTTACGAGAGCGACAA GCTGCCGTTTTACGTGCATGACCTACGGACGAAATAG |