© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00527 |
| Gene name | |
| Location | scaffold_01:2153172..2153949 |
| Strand | - |
| Gene length (bp) | 777 |
| Transcript length (bp) | 777 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04116 | FA_hydroxylase | Fatty acid hydroxylase | 1.9E-18 | 123 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0008610 | lipid biosynthetic process | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0006629 | lipid metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0043167 | ion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 76 | 98 | 22 |
| 3 | 186 | 208 | 22 |
| 4 | 228 | 247 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 1.07 | 0.0 | 2.27 |
| Alive | In ants, during behavior modification | 0.27 | 0.0 | 0.74 |
| Dead | In ants, recently dead | 0.20 | 0.0 | 0.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.070836 | no |
| Alive | Dead | 1.000000 | no |
| Dead | Fungus | 0.052835 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00527 MGTKLSSLESFWLYLLANYDPFTIKFYGLLSVDVLAWWVPCFVFVSLEYLAPSFAARHKMQASEKSPTLRKLCRC IIVALANTFLAAVEFTAFNHLFSTKAYPEGNRFDARLPSLSRFVGEFLMSFALREILFYWGHRALHWRPLYRSIH RIHHEFSAPVAFASKYAHPIEFLTSDSLPIMLPPFILRTHVVSTFAFTAGTLFTSTIIHSGYDFFYRAAWMHDRH HEGANAYFGAFGALGLIDWAHGTIEKDRKVKGL* |
| Coding | >Ophcf2|00527 ATGGGCACCAAACTGTCGTCGCTGGAGAGCTTCTGGCTGTATCTCTTGGCCAACTATGACCCCTTCACTATCAAG TTTTACGGCCTCCTCTCGGTCGACGTCTTGGCTTGGTGGGTTCCCTGCTTCGTCTTCGTCTCGCTCGAGTACCTG GCGCCATCATTCGCGGCGAGACACAAGATGCAAGCATCGGAGAAGAGCCCTACGTTGAGAAAGTTGTGCCGCTGC ATCATCGTCGCTCTCGCCAACACGTTTCTCGCGGCGGTCGAATTTACTGCCTTTAACCATCTGTTTTCCACAAAG GCTTATCCCGAGGGCAACCGGTTCGATGCGAGGTTGCCGTCTTTGAGCCGCTTCGTGGGAGAGTTCCTCATGAGC TTCGCCCTACGAGAGATCTTGTTCTACTGGGGACACCGGGCTCTTCACTGGCGGCCGTTATACAGAAGCATTCAC AGGATACACCACGAGTTTTCCGCGCCCGTCGCCTTTGCGTCCAAGTACGCCCATCCTATCGAGTTTCTGACGTCG GATTCGCTGCCCATCATGTTACCGCCTTTTATACTGCGGACGCACGTGGTTTCGACCTTTGCTTTTACGGCTGGT ACGCTGTTCACGTCGACCATTATTCATAGCGGCTACGATTTCTTTTATAGGGCGGCATGGATGCATGATCGTCAT CATGAGGGGGCGAATGCTTACTTTGGCGCCTTTGGTGCTCTGGGCCTGATCGATTGGGCTCATGGGACCATCGAG AAGGATCGTAAGGTCAAGGGGCTGTGA |
| Transcript | >Ophcf2|00527 ATGGGCACCAAACTGTCGTCGCTGGAGAGCTTCTGGCTGTATCTCTTGGCCAACTATGACCCCTTCACTATCAAG TTTTACGGCCTCCTCTCGGTCGACGTCTTGGCTTGGTGGGTTCCCTGCTTCGTCTTCGTCTCGCTCGAGTACCTG GCGCCATCATTCGCGGCGAGACACAAGATGCAAGCATCGGAGAAGAGCCCTACGTTGAGAAAGTTGTGCCGCTGC ATCATCGTCGCTCTCGCCAACACGTTTCTCGCGGCGGTCGAATTTACTGCCTTTAACCATCTGTTTTCCACAAAG GCTTATCCCGAGGGCAACCGGTTCGATGCGAGGTTGCCGTCTTTGAGCCGCTTCGTGGGAGAGTTCCTCATGAGC TTCGCCCTACGAGAGATCTTGTTCTACTGGGGACACCGGGCTCTTCACTGGCGGCCGTTATACAGAAGCATTCAC AGGATACACCACGAGTTTTCCGCGCCCGTCGCCTTTGCGTCCAAGTACGCCCATCCTATCGAGTTTCTGACGTCG GATTCGCTGCCCATCATGTTACCGCCTTTTATACTGCGGACGCACGTGGTTTCGACCTTTGCTTTTACGGCTGGT ACGCTGTTCACGTCGACCATTATTCATAGCGGCTACGATTTCTTTTATAGGGCGGCATGGATGCATGATCGTCAT CATGAGGGGGCGAATGCTTACTTTGGCGCCTTTGGTGCTCTGGGCCTGATCGATTGGGCTCATGGGACCATCGAG AAGGATCGTAAGGTCAAGGGGCTGTGA |
| Gene | >Ophcf2|00527 ATGGGCACCAAACTGTCGTCGCTGGAGAGCTTCTGGCTGTATCTCTTGGCCAACTATGACCCCTTCACTATCAAG TTTTACGGCCTCCTCTCGGTCGACGTCTTGGCTTGGTGGGTTCCCTGCTTCGTCTTCGTCTCGCTCGAGTACCTG GCGCCATCATTCGCGGCGAGACACAAGATGCAAGCATCGGAGAAGAGCCCTACGTTGAGAAAGTTGTGCCGCTGC ATCATCGTCGCTCTCGCCAACACGTTTCTCGCGGCGGTCGAATTTACTGCCTTTAACCATCTGTTTTCCACAAAG GCTTATCCCGAGGGCAACCGGTTCGATGCGAGGTTGCCGTCTTTGAGCCGCTTCGTGGGAGAGTTCCTCATGAGC TTCGCCCTACGAGAGATCTTGTTCTACTGGGGACACCGGGCTCTTCACTGGCGGCCGTTATACAGAAGCATTCAC AGGATACACCACGAGTTTTCCGCGCCCGTCGCCTTTGCGTCCAAGTACGCCCATCCTATCGAGTTTCTGACGTCG GATTCGCTGCCCATCATGTTACCGCCTTTTATACTGCGGACGCACGTGGTTTCGACCTTTGCTTTTACGGCTGGT ACGCTGTTCACGTCGACCATTATTCATAGCGGCTACGATTTCTTTTATAGGGCGGCATGGATGCATGATCGTCAT CATGAGGGGGCGAATGCTTACTTTGGCGCCTTTGGTGCTCTGGGCCTGATCGATTGGGCTCATGGGACCATCGAG AAGGATCGTAAGGTCAAGGGGCTGTGA |