© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00518 |
| Gene name | |
| Location | scaffold_01:2130380..2132134 |
| Strand | - |
| Gene length (bp) | 1754 |
| Transcript length (bp) | 1698 |
| Coding sequence length (bp) | 1698 |
| Protein length (aa) | 566 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00443 | UCH | Ubiquitin carboxyl-terminal hydrolase | 9.4E-48 | 110 | 552 |
| PF00240 | ubiquitin | Ubiquitin family | 2.6E-10 | 7 | 74 |
| PF13423 | UCH_1 | Ubiquitin carboxyl-terminal hydrolase | 1.6E-07 | 109 | 526 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0004843 | cysteine-type deubiquitinase activity | Yes |
| GO:0016579 | protein deubiquitination | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0070647 | protein modification by small protein conjugation or removal | No |
| GO:0070646 | protein modification by small protein removal | No |
| GO:0003824 | catalytic activity | No |
| GO:0008234 | cysteine-type peptidase activity | No |
| GO:0019538 | protein metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008233 | peptidase activity | No |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0043412 | macromolecule modification | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0008150 | biological_process | No |
| GO:0006508 | proteolysis | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00518 MAALTVVVKHQGKKHDVEVDPESTGEDFKLQLFSLTSVEPERQKILIKGGQLRDTADMGKLGLKAGQVIMMLGTP SSSGSNLVRPKEPIKFVEDMTEAEKAQQLDSTPAGLVNLGNTCYLNSTLQTLRSIPELHAALPEYVRANPTVNPT ANPTANSTNTREIDLAFHMSRLYQDMGRTQEAFPPVDFLGALRSAFPQFAEKSRSDNGFAQQDAEEAWSQIVQNL KPRVKVKDLAGTGNVTLIDKYMSGQLTSTMECQDPGAREAGEETVVQRETFYKLSCHIDGTTNHLRDGILAALSE KIEKKSEVLDREAEYKKTSAICRAPKYLTIHFVRFFWKRQTQKKAKIMRKVTFPQELDIVEFCSDDLKKALIPVR DKVREIRKDEEDIERARKRRKKNHDEEMADIPGGAGLAPTKKDGKTEQATEAGDGTAAETFKTDAEIEAEKDAAV LAAKKELHAMISPSLRDDDGANQSGLYELRGVVTHQGGSADSGHYTAYVKKSAPVDPKTGKKGEEDGMWWWFNDD KVTEVTVDKIEGLAGGGESHSALILLYKAIPLPTADGTMG* |
| Coding | >Ophcf2|00518 ATGGCGGCACTCACAGTCGTCGTCAAACACCAGGGCAAGAAGCACGATGTCGAGGTCGACCCTGAATCCACGGGC GAGGACTTCAAACTCCAGCTCTTCAGTCTCACTAGTGTAGAGCCGGAGCGGCAAAAGATCCTCATCAAGGGCGGT CAGCTCAGAGATACCGCCGACATGGGCAAACTGGGGCTCAAGGCCGGCCAGGTCATCATGATGCTGGGCACCCCG AGCTCCAGCGGCTCCAACCTCGTCCGACCCAAGGAACCCATCAAGTTCGTCGAAGACATGACCGAGGCCGAGAAG GCTCAGCAGCTCGACTCCACCCCGGCCGGCCTCGTCAACCTCGGTAACACTTGCTATCTCAACTCGACACTGCAA ACGCTGCGCTCTATCCCCGAACTCCACGCGGCCCTGCCCGAGTACGTTCGTGCCAATCCTACCGTCAATCCTACC GCCAATCCTACCGCCAATTCTACCAACACGCGCGAGATCGACCTGGCCTTTCACATGTCACGTCTGTACCAGGAC ATGGGTCGCACGCAAGAGGCCTTTCCGCCCGTCGACTTCCTCGGCGCCCTGCGCTCCGCCTTTCCGCAGTTTGCC GAAAAGTCCAGGTCCGACAACGGCTTTGCTCAGCAGGATGCCGAGGAAGCCTGGTCTCAGATCGTCCAGAATCTG AAGCCCAGGGTCAAGGTCAAAGATTTGGCCGGCACCGGCAATGTGACTTTGATCGACAAGTACATGTCTGGTCAG CTAACTTCGACGATGGAGTGTCAAGACCCAGGTGCCCGTGAGGCGGGCGAGGAGACCGTGGTCCAAAGGGAAACA TTTTACAAGCTCAGCTGCCACATCGACGGCACGACGAACCACTTGCGGGACGGCATCTTGGCCGCGCTGAGCGAA AAGATTGAGAAGAAGTCGGAAGTGCTGGATCGCGAGGCCGAGTATAAGAAGACGTCGGCCATCTGTCGAGCTCCC AAATATTTGACGATCCATTTCGTGCGCTTCTTTTGGAAGCGTCAGACGCAGAAAAAGGCCAAAATCATGCGCAAG GTGACGTTTCCTCAGGAGCTGGACATTGTCGAGTTTTGCTCCGACGACCTCAAGAAGGCCCTGATCCCCGTCCGA GACAAGGTACGGGAGATCCGCAAGGATGAAGAGGACATTGAGCGGGCCCGCAAACGCCGCAAGAAGAACCACGAC GAGGAGATGGCGGACATTCCAGGGGGCGCCGGGCTGGCACCGACAAAGAAGGACGGCAAGACGGAGCAGGCTACC GAGGCGGGCGACGGCACCGCGGCCGAAACCTTCAAGACGGACGCCGAGATTGAAGCCGAAAAGGACGCGGCGGTA CTGGCGGCCAAGAAGGAGCTGCATGCCATGATCAGCCCCAGCCTCCGCGACGACGACGGCGCCAACCAGTCGGGG CTGTACGAGCTACGCGGCGTGGTGACACACCAGGGCGGCAGCGCCGACAGCGGACATTACACGGCCTACGTCAAG AAGTCGGCCCCGGTGGACCCCAAGACGGGCAAGAAGGGCGAGGAGGATGGCATGTGGTGGTGGTTCAACGACGAC AAGGTGACCGAGGTGACGGTCGACAAGATCGAGGGTTTGGCCGGCGGCGGCGAATCGCACTCGGCCCTGATTCTG CTCTACAAGGCCATTCCGCTTCCCACGGCGGACGGCACGATGGGGTAG |
| Transcript | >Ophcf2|00518 ATGGCGGCACTCACAGTCGTCGTCAAACACCAGGGCAAGAAGCACGATGTCGAGGTCGACCCTGAATCCACGGGC GAGGACTTCAAACTCCAGCTCTTCAGTCTCACTAGTGTAGAGCCGGAGCGGCAAAAGATCCTCATCAAGGGCGGT CAGCTCAGAGATACCGCCGACATGGGCAAACTGGGGCTCAAGGCCGGCCAGGTCATCATGATGCTGGGCACCCCG AGCTCCAGCGGCTCCAACCTCGTCCGACCCAAGGAACCCATCAAGTTCGTCGAAGACATGACCGAGGCCGAGAAG GCTCAGCAGCTCGACTCCACCCCGGCCGGCCTCGTCAACCTCGGTAACACTTGCTATCTCAACTCGACACTGCAA ACGCTGCGCTCTATCCCCGAACTCCACGCGGCCCTGCCCGAGTACGTTCGTGCCAATCCTACCGTCAATCCTACC GCCAATCCTACCGCCAATTCTACCAACACGCGCGAGATCGACCTGGCCTTTCACATGTCACGTCTGTACCAGGAC ATGGGTCGCACGCAAGAGGCCTTTCCGCCCGTCGACTTCCTCGGCGCCCTGCGCTCCGCCTTTCCGCAGTTTGCC GAAAAGTCCAGGTCCGACAACGGCTTTGCTCAGCAGGATGCCGAGGAAGCCTGGTCTCAGATCGTCCAGAATCTG AAGCCCAGGGTCAAGGTCAAAGATTTGGCCGGCACCGGCAATGTGACTTTGATCGACAAGTACATGTCTGGTCAG CTAACTTCGACGATGGAGTGTCAAGACCCAGGTGCCCGTGAGGCGGGCGAGGAGACCGTGGTCCAAAGGGAAACA TTTTACAAGCTCAGCTGCCACATCGACGGCACGACGAACCACTTGCGGGACGGCATCTTGGCCGCGCTGAGCGAA AAGATTGAGAAGAAGTCGGAAGTGCTGGATCGCGAGGCCGAGTATAAGAAGACGTCGGCCATCTGTCGAGCTCCC AAATATTTGACGATCCATTTCGTGCGCTTCTTTTGGAAGCGTCAGACGCAGAAAAAGGCCAAAATCATGCGCAAG GTGACGTTTCCTCAGGAGCTGGACATTGTCGAGTTTTGCTCCGACGACCTCAAGAAGGCCCTGATCCCCGTCCGA GACAAGGTACGGGAGATCCGCAAGGATGAAGAGGACATTGAGCGGGCCCGCAAACGCCGCAAGAAGAACCACGAC GAGGAGATGGCGGACATTCCAGGGGGCGCCGGGCTGGCACCGACAAAGAAGGACGGCAAGACGGAGCAGGCTACC GAGGCGGGCGACGGCACCGCGGCCGAAACCTTCAAGACGGACGCCGAGATTGAAGCCGAAAAGGACGCGGCGGTA CTGGCGGCCAAGAAGGAGCTGCATGCCATGATCAGCCCCAGCCTCCGCGACGACGACGGCGCCAACCAGTCGGGG CTGTACGAGCTACGCGGCGTGGTGACACACCAGGGCGGCAGCGCCGACAGCGGACATTACACGGCCTACGTCAAG AAGTCGGCCCCGGTGGACCCCAAGACGGGCAAGAAGGGCGAGGAGGATGGCATGTGGTGGTGGTTCAACGACGAC AAGGTGACCGAGGTGACGGTCGACAAGATCGAGGGTTTGGCCGGCGGCGGCGAATCGCACTCGGCCCTGATTCTG CTCTACAAGGCCATTCCGCTTCCCACGGCGGACGGCACGATGGGGTAG |
| Gene | >Ophcf2|00518 ATGGCGGCACTCACAGGTAGGCATCCTGCCCCAATACCCCCCACCCCGTCGTACCCTTTCTGACCCCCGCAGTCG TCGTCAAACACCAGGGCAAGAAGCACGATGTCGAGGTCGACCCTGAATCCACGGGCGAGGACTTCAAACTCCAGC TCTTCAGTCTCACTAGTGTAGAGCCGGAGCGGCAAAAGATCCTCATCAAGGGCGGTCAGCTCAGAGATACCGCCG ACATGGGCAAACTGGGGCTCAAGGCCGGCCAGGTCATCATGATGCTGGGCACCCCGAGCTCCAGCGGCTCCAACC TCGTCCGACCCAAGGAACCCATCAAGTTCGTCGAAGACATGACCGAGGCCGAGAAGGCTCAGCAGCTCGACTCCA CCCCGGCCGGCCTCGTCAACCTCGGTAACACTTGCTATCTCAACTCGACACTGCAAACGCTGCGCTCTATCCCCG AACTCCACGCGGCCCTGCCCGAGTACGTTCGTGCCAATCCTACCGTCAATCCTACCGCCAATCCTACCGCCAATT CTACCAACACGCGCGAGATCGACCTGGCCTTTCACATGTCACGTCTGTACCAGGACATGGGTCGCACGCAAGAGG CCTTTCCGCCCGTCGACTTCCTCGGCGCCCTGCGCTCCGCCTTTCCGCAGTTTGCCGAAAAGTCCAGGTCCGACA ACGGCTTTGCTCAGCAGGATGCCGAGGAAGCCTGGTCTCAGATCGTCCAGAATCTGAAGCCCAGGGTCAAGGTCA AAGATTTGGCCGGCACCGGCAATGTGACTTTGATCGACAAGTACATGTCTGGTCAGCTAACTTCGACGATGGAGT GTCAAGACCCAGGTGCCCGTGAGGCGGGCGAGGAGACCGTGGTCCAAAGGGAAACATTTTACAAGCTCAGCTGCC ACATCGACGGCACGACGAACCACTTGCGGGACGGCATCTTGGCCGCGCTGAGCGAAAAGATTGAGAAGAAGTCGG AAGTGCTGGATCGCGAGGCCGAGTATAAGAAGACGTCGGCCATCTGTCGAGCTCCCAAATATTTGACGATCCATT TCGTGCGCTTCTTTTGGAAGCGTCAGACGCAGAAAAAGGCCAAAATCATGCGCAAGGTGACGTTTCCTCAGGAGC TGGACATTGTCGAGTTTTGCTCCGACGACCTCAAGAAGGCCCTGATCCCCGTCCGAGACAAGGTACGGGAGATCC GCAAGGATGAAGAGGACATTGAGCGGGCCCGCAAACGCCGCAAGAAGAACCACGACGAGGAGATGGCGGACATTC CAGGGGGCGCCGGGCTGGCACCGACAAAGAAGGACGGCAAGACGGAGCAGGCTACCGAGGCGGGCGACGGCACCG CGGCCGAAACCTTCAAGACGGACGCCGAGATTGAAGCCGAAAAGGACGCGGCGGTACTGGCGGCCAAGAAGGAGC TGCATGCCATGATCAGCCCCAGCCTCCGCGACGACGACGGCGCCAACCAGTCGGGGCTGTACGAGCTACGCGGCG TGGTGACACACCAGGGCGGCAGCGCCGACAGCGGACATTACACGGCCTACGTCAAGAAGTCGGCCCCGGTGGACC CCAAGACGGGCAAGAAGGGCGAGGAGGATGGCATGTGGTGGTGGTTCAACGACGACAAGGTGACCGAGGTGACGG TCGACAAGATCGAGGGTTTGGCCGGCGGCGGCGAATCGCACTCGGCCCTGATTCTGCTCTACAAGGCCATTCCGC TTCCCACGGCGGACGGCACGATGGGGTAG |