© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|00513 |
| Gene name | |
| Location | scaffold_01:2122013..2123700 |
| Strand | - |
| Gene length (bp) | 1687 |
| Transcript length (bp) | 1431 |
| Coding sequence length (bp) | 1431 |
| Protein length (aa) | 477 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00909 | Ammonium_transp | Ammonium Transporter Family | 1.9E-115 | 33 | 438 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0072488 | ammonium transmembrane transport | Yes |
| GO:0008519 | ammonium transmembrane transporter activity | Yes |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0015267 | channel activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0005261 | cation channel activity | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| GO:0005216 | ion channel activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 54 | 22 |
| 2 | 61 | 83 | 22 |
| 3 | 121 | 143 | 22 |
| 4 | 148 | 170 | 22 |
| 5 | 185 | 207 | 22 |
| 6 | 220 | 242 | 22 |
| 7 | 252 | 274 | 22 |
| 8 | 286 | 308 | 22 |
| 9 | 312 | 334 | 22 |
| 10 | 341 | 363 | 22 |
| 11 | 387 | 409 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 56.71 | 32.13 | 81.30 |
| Alive | In ants, during behavior modification | 553.49 | 222.34 | 884.64 |
| Dead | In ants, recently dead | 1292.35 | 446.17 | 2138.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|00513 MATAYNGTNSTADDGSSTGASNLNVFYDTGHLAFLTVSSVLVLLMIPGVGFFYSGLARRKSALQLVLLSMLSVAV IGFQWFFWGYSLAFSRTGNAFLGDLSQFGLMKTIAQPNGSSFLPDILFCLYQGMFASITPALAIGAVADRGRILP ALVFMFVWSTAVYDPIAYWTWNTNGWLYKLPSYDFAGGGPVHISSGTCALAYSLMLGRRTGYSSNGGLPYRPHSV TNVVLGTVFLWVGWFGFNGGSALGMNLRAVMACYVSNLAASCAGITWVLLDYRLERKWSTIGFCSGAISGLVAIT PAAGFVTPWAAVVIGVCGALCCNFATKLKFLLGVDDALDIFAVHGVGGIVGNILTGIFGASYIASLDGQSYPPIG WVERHWVQLGKQLAGICAAFAWSFTLSCLILFLMNLVPGLSLRVSADDEVVGIDDCQLGEFAYDYVELTRHVADD ITTVSDRNASSDGEKNVATPTAALTP* |
| Coding | >Ophcf2|00513 ATGGCGACGGCCTACAATGGCACCAACAGCACCGCTGACGATGGCTCTTCAACCGGGGCGTCCAACCTCAACGTC TTCTACGACACGGGCCATTTGGCCTTTCTGACGGTGTCGTCTGTGCTGGTGCTGCTCATGATTCCCGGCGTCGGC TTCTTCTACAGCGGTCTTGCCCGTCGCAAATCGGCGCTGCAGCTCGTCCTGCTGTCGATGCTGTCCGTCGCCGTC ATCGGCTTCCAATGGTTCTTTTGGGGATACTCGCTCGCCTTTTCCCGCACCGGAAACGCCTTTCTCGGTGATCTA TCGCAGTTTGGCCTGATGAAGACGATTGCTCAGCCCAATGGCTCTAGCTTTCTGCCCGACATTCTCTTTTGCCTC TACCAGGGCATGTTCGCCTCCATCACACCGGCACTAGCCATCGGAGCCGTGGCCGATCGCGGTCGCATCTTACCG GCCCTCGTCTTCATGTTCGTCTGGTCGACTGCGGTGTACGACCCGATCGCCTACTGGACGTGGAACACGAACGGC TGGCTCTACAAGCTACCGAGCTACGACTTCGCCGGCGGCGGCCCCGTCCACATCTCGTCCGGCACCTGCGCCCTC GCCTACAGCCTGATGCTCGGCCGTCGAACGGGCTACTCCAGCAACGGCGGACTCCCCTACCGACCGCACAGCGTG ACAAACGTCGTCCTCGGCACCGTCTTCCTCTGGGTCGGCTGGTTCGGCTTCAACGGCGGGTCAGCCCTCGGCATG AACCTCCGGGCCGTCATGGCCTGCTACGTCAGTAACCTCGCCGCCTCATGCGCCGGAATCACATGGGTCCTACTC GACTACCGACTCGAGCGCAAATGGTCCACCATTGGCTTCTGCTCCGGCGCCATCTCGGGCCTCGTCGCCATCACC CCGGCCGCCGGCTTCGTCACCCCCTGGGCAGCCGTCGTCATCGGCGTCTGCGGCGCCCTGTGCTGCAACTTTGCC ACCAAGCTCAAGTTCCTCCTCGGCGTCGACGACGCCCTCGACATCTTTGCCGTCCACGGCGTCGGCGGCATCGTC GGCAATATCCTAACCGGCATCTTTGGCGCCTCCTACATCGCCTCCCTAGACGGCCAATCCTACCCCCCCATAGGC TGGGTAGAGCGCCACTGGGTCCAACTCGGCAAGCAACTGGCCGGCATCTGCGCCGCCTTCGCCTGGTCCTTTACC CTCTCCTGCCTCATCCTCTTCCTCATGAACCTCGTACCGGGCCTCTCGCTACGCGTCTCTGCAGACGACGAGGTG GTCGGTATAGACGACTGCCAACTCGGTGAATTCGCCTACGATTACGTGGAACTCACCCGCCACGTCGCCGATGAC ATCACCACCGTCTCCGACCGCAACGCCTCCTCCGACGGCGAAAAGAACGTCGCCACCCCGACCGCCGCCCTCACC CCGTGA |
| Transcript | >Ophcf2|00513 ATGGCGACGGCCTACAATGGCACCAACAGCACCGCTGACGATGGCTCTTCAACCGGGGCGTCCAACCTCAACGTC TTCTACGACACGGGCCATTTGGCCTTTCTGACGGTGTCGTCTGTGCTGGTGCTGCTCATGATTCCCGGCGTCGGC TTCTTCTACAGCGGTCTTGCCCGTCGCAAATCGGCGCTGCAGCTCGTCCTGCTGTCGATGCTGTCCGTCGCCGTC ATCGGCTTCCAATGGTTCTTTTGGGGATACTCGCTCGCCTTTTCCCGCACCGGAAACGCCTTTCTCGGTGATCTA TCGCAGTTTGGCCTGATGAAGACGATTGCTCAGCCCAATGGCTCTAGCTTTCTGCCCGACATTCTCTTTTGCCTC TACCAGGGCATGTTCGCCTCCATCACACCGGCACTAGCCATCGGAGCCGTGGCCGATCGCGGTCGCATCTTACCG GCCCTCGTCTTCATGTTCGTCTGGTCGACTGCGGTGTACGACCCGATCGCCTACTGGACGTGGAACACGAACGGC TGGCTCTACAAGCTACCGAGCTACGACTTCGCCGGCGGCGGCCCCGTCCACATCTCGTCCGGCACCTGCGCCCTC GCCTACAGCCTGATGCTCGGCCGTCGAACGGGCTACTCCAGCAACGGCGGACTCCCCTACCGACCGCACAGCGTG ACAAACGTCGTCCTCGGCACCGTCTTCCTCTGGGTCGGCTGGTTCGGCTTCAACGGCGGGTCAGCCCTCGGCATG AACCTCCGGGCCGTCATGGCCTGCTACGTCAGTAACCTCGCCGCCTCATGCGCCGGAATCACATGGGTCCTACTC GACTACCGACTCGAGCGCAAATGGTCCACCATTGGCTTCTGCTCCGGCGCCATCTCGGGCCTCGTCGCCATCACC CCGGCCGCCGGCTTCGTCACCCCCTGGGCAGCCGTCGTCATCGGCGTCTGCGGCGCCCTGTGCTGCAACTTTGCC ACCAAGCTCAAGTTCCTCCTCGGCGTCGACGACGCCCTCGACATCTTTGCCGTCCACGGCGTCGGCGGCATCGTC GGCAATATCCTAACCGGCATCTTTGGCGCCTCCTACATCGCCTCCCTAGACGGCCAATCCTACCCCCCCATAGGC TGGGTAGAGCGCCACTGGGTCCAACTCGGCAAGCAACTGGCCGGCATCTGCGCCGCCTTCGCCTGGTCCTTTACC CTCTCCTGCCTCATCCTCTTCCTCATGAACCTCGTACCGGGCCTCTCGCTACGCGTCTCTGCAGACGACGAGGTG GTCGGTATAGACGACTGCCAACTCGGTGAATTCGCCTACGATTACGTGGAACTCACCCGCCACGTCGCCGATGAC ATCACCACCGTCTCCGACCGCAACGCCTCCTCCGACGGCGAAAAGAACGTCGCCACCCCGACCGCCGCCCTCACC CCGTGA |
| Gene | >Ophcf2|00513 ATGGCGACGGCCTACAATGGCACCAACAGCACCGCTGACGATGGCTCTTCAACCGGGGCGTCCAACCTCAACGTC TTCTACGACGTACGTCTTTCCTCCGGACCTCGTTCGCGGCTTCTAACGGGTCGCAGACGGGCCATTTGGCCTTTC TGACGGTGTCGTCTGTGCTGGTGCTGCTCATGATTCCCGGCGTCGGCTTCTTCTACAGCGGTCTTGCCCGTCGCA AATCGGCGCTGCAGCTCGTCCTGCTGTCGATGCTGTCCGTCGCCGTCATCGGCTTCCAATGGTTCTTTTGGGGAT ACTCGCTCGCCTTTTCCCGCACCGGAAACGCCTTTCTCGGTGATCTATCGCAGTTTGGCCTGATGAAGACGATTG CTCAGCCCAATGGCTCTAGCTTTCTGCCCGACATTCTCTTTTGCCTCTACCAGGGCATGTTCGCCTCCATCACGT TCGTCCACGACACCCCTTGATTCTTACTCATTCCGGACTGATGGTATTGACGCAAGTCTCGCAGACCGGCACTAG CCATCGGAGCCGTGGCCGATCGCGGTCGCATCTTACCGGCCCTCGTCTTCATGTTCGTCTGGTCGACTGCGGTGT ACGACCCGATCGCCTACTGGACGTGGAACACGAACGGCTGGCTCTACAAGCTACCGAGCTACGACTTCGCCGGCG GCGGCCCCGTCCACATCTCGTCCGGCACCTGCGCCCTCGCCTACAGCCTGATGCTCGGCCGTCGAACGGGCTACT CCAGCAACGGCGGACTCCCCTACCGACCGCACAGCGTGACAAACGTCGTCCTCGGCACCGTCTTCCTCTGGGTCG GCTGGTTCGGCTTCAACGGCGGGTCAGCCCTCGGCATGAACCTCCGGGCCGTCATGGCCTGCTACGTCAGTAACC TCGCCGCCTCATGCGCCGGAATCACATGGGTCCTACTCGACTACCGACTCGAGCGCAAATGGTCCACCATTGGCT TCTGCTCCGGCGCCATCTCGGGCCTCGTCGCCATCACCCCGGCCGCCGGCTTCGTCACCCCCTGGGCAGCCGTCG TCATCGGCGTCTGCGGCGCCCTGTGCTGCAACTTTGCCACCAAGCTCAAGTTCCTCCTCGGCGTCGACGACGCCC TCGACATCTTTGCCGTCCACGGCGTCGGCGGCATCGTCGGCAATATCCTAACCGGCATCTTTGGCGCGTACGTCT TCTCTCTTCTACCCTCTCCTCTCCTCTCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCCTCCTCTCCTCTCTTCCT CACCCACCAATTCCATCTCACTAACAACCCCCCCCTCCCCCCCTTCCTCGGGGTAAACAGCTCCTACATCGCCTC CCTAGACGGCCAATCCTACCCCCCCATAGGCTGGGTAGAGCGCCACTGGGTCCAACTCGGCAAGCAACTGGCCGG CATCTGCGCCGCCTTCGCCTGGTCCTTTACCCTCTCCTGCCTCATCCTCTTCCTCATGAACCTCGTACCGGGCCT CTCGCTACGCGTCTCTGCAGACGACGAGGTGGTCGGTATAGACGACTGCCAACTCGGTGAATTCGCCTACGATTA CGTGGAACTCACCCGCCACGTCGCCGATGACATCACCACCGTCTCCGACCGCAACGCCTCCTCCGACGGCGAAAA GAACGTCGCCACCCCGACCGCCGCCCTCACCCCGTGA |